RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 PIGSQ96S52 555 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 PRR12Q9ULL5 1215 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 V9GY48 417 aaPredicted RBP4.7□□□□□ -1.66
LIG4-201ENST00000356922 DOCK3Q8IZD9 2030 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 ERICH2A1L162 156 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 OPLAHO14841 1288 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 TBC1D8O95759 1140 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 ZBTB48P10074 688 aaPredicted RBP4.7□□□□□ -1.66
LIG4-201ENST00000356922 METAP2P50579 478 aaKnown RBP eCLIP4.7□□□□□ -1.66
LIG4-201ENST00000356922 SNAPC2Q13487 334 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 TMEM132BQ14DG7 1078 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 NOM1Q5C9Z4 860 aaKnown RBP4.7□□□□□ -1.66
LIG4-201ENST00000356922 CATIPQ7Z7H3 387 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 IFNL1Q8IU54 200 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 NSUN7Q8NE18 718 aaKnown RBP4.7□□□□□ -1.66
LIG4-201ENST00000356922 REPS2Q8NFH8 660 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 GTF3C6Q969F1 213 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 TANGO6Q9C0B7 1094 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 ARHGEF10LQ9HCE6 1279 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 ADAMTS5Q9UNA0 930 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 C19orf81C9J6K1 198 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 FLOT1O75955 427 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 HOXA7P31268 230 aaPredicted RBP4.69□□□□□ -1.66
LIG4-201ENST00000356922 TM4SF4P48230 202 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 SART3Q15020 963 aaKnown RBP4.69□□□□□ -1.66
LIG4-201ENST00000356922 TMTC3Q6ZXV5 915 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 HOMER1Q86YM7 354 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 GPKOWQ92917 476 aaPredicted RBP eCLIP4.69□□□□□ -1.66
LIG4-201ENST00000356922 COA7Q96BR5 231 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 HHIPL1Q96JK4 782 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 MTA3Q9BTC8 594 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 RIOX1Q9H6W3 641 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 AGTPBP1Q9UPW5 1226 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 SZT2Q5T011 3432 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 PARP14Q460N5 1801 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 GOLGA8AA7E2F4 631 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 VWA5AO00534 786 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 TRPA1O75762 1119 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 PARP1P09874 1014 aaKnown RBP4.69□□□□□ -1.66
LIG4-201ENST00000356922 GTF2A2P52657 109 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 CRHR2Q13324 411 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 CCDC96Q2M329 555 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 CPXCR1Q8N123 301 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 TMTC2Q8N394 836 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 SNX21Q969T3 373 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 ARHGAP39Q9C0H5 1083 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 PORCNQ9H237 461 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 SLKQ9H2G2 1235 aaPredicted RBP4.69□□□□□ -1.66
LIG4-201ENST00000356922 ZNF214Q9UL59 606 aaPredicted RBP4.69□□□□□ -1.66
LIG4-201ENST00000356922 CNTNAP5Q8WYK1 1306 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 UNCXA6NJT0 531 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 RBAK-RBAKDNI3L0D1 243 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 DSG3P32926 999 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 FOSBP53539 338 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 HERVK_113P62684 666 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 CUL4AQ13619 759 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 NPY5RQ15761 445 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 RTN1Q16799 776 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 CCDC174Q6PII3 467 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 BTNL9Q6UXG8 535 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 CCDC102AQ96A19 550 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 MTMR8Q96EF0 704 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 AS3MTQ9HBK9 375 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 RAVER2Q9HCJ3 691 aaKnown RBP4.69□□□□□ -1.66
LIG4-201ENST00000356922 GINM1Q9NU53 330 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 CPA4Q9UI42 421 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 PPP1R9AQ9ULJ8 1098 aa4.69□□□□□ -1.66
LIG4-201ENST00000356922 COL11A1P12107 1806 aaPredicted RBP4.69□□□□□ -1.66
LIG4-201ENST00000356922 WDR46O15213 610 aaKnown RBP4.68□□□□□ -1.66
LIG4-201ENST00000356922 DDAH1O94760 285 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 CETPP11597 493 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 COG2Q14746 738 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 QRICH1Q2TAL8 776 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 MUM1L1Q5H9M0 696 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 ANKRD13CQ8N6S4 541 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 PROCA1Q8NCQ7 364 aaPredicted RBP4.68□□□□□ -1.66
LIG4-201ENST00000356922 LPAR1Q92633 364 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 GOPCQ9HD26 462 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 ZSWIM8A7E2V4 1837 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 LOC285556D6RIA3 1793 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 K7ELQ4 463 aaPredicted RBP4.68□□□□□ -1.66
LIG4-201ENST00000356922 EDIL3O43854 480 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 ST18O60284 1047 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 IFNAR1P17181 557 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 STAT2P52630 851 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 GUCY1B3Q02153 619 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 USH1GQ495M9 461 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 EARS2Q5JPH6 523 aaKnown RBP4.68□□□□□ -1.66
LIG4-201ENST00000356922 LBX2Q6XYB7 198 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 SMARCC2Q8TAQ2 1214 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 DCAF4Q8WV16 495 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 SLC26A6Q9BXS9 759 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 SLC38A10Q9HBR0 1119 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 RNF186Q9NXI6 227 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 PTPDC1A2A3K4 754 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 USP17L15C9J2P7 530 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 USP17L13C9JLJ4 530 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 USP17L11C9JVI0 530 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 USP17L18D6R9N7 530 aa4.68□□□□□ -1.66
LIG4-201ENST00000356922 USP17L22D6RA61 530 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms