RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 CCDC13Q8IYE1 715 aa7.1□□□□□ -1.27
UPF2-201ENST00000356352 ZSCAN10Q96SZ4 725 aaPredicted RBP7.1□□□□□ -1.27
UPF2-201ENST00000356352 PPP1R12CQ9BZL4 782 aa7.1□□□□□ -1.27
UPF2-201ENST00000356352 ANKFY1Q9P2R3 1169 aa7.1□□□□□ -1.27
UPF2-201ENST00000356352 MAPK8IP1Q9UQF2 711 aa7.1□□□□□ -1.27
UPF2-201ENST00000356352 TTLL3Q9Y4R7 772 aa7.1□□□□□ -1.27
UPF2-201ENST00000356352 BIVM-ERCC5R4GMW8 1640 aa7.1□□□□□ -1.27
UPF2-201ENST00000356352 PLXNC1O60486 1568 aa7.1□□□□□ -1.27
UPF2-201ENST00000356352 NPC1L1Q9UHC9 1359 aa7.1□□□□□ -1.27
UPF2-201ENST00000356352 HSPA8P11142 646 aaKnown RBP7.1□□□□□ -1.27
UPF2-201ENST00000356352 ATP5JP18859 108 aa7.1□□□□□ -1.27
UPF2-201ENST00000356352 DBN1Q16643 649 aa7.1□□□□□ -1.27
UPF2-201ENST00000356352 ARHGAP44Q17R89 818 aa7.1□□□□□ -1.27
UPF2-201ENST00000356352 TYW1BQ6NUM6 668 aa7.1□□□□□ -1.27
UPF2-201ENST00000356352 ZNF449Q6P9G9 518 aa7.1□□□□□ -1.27
UPF2-201ENST00000356352 MAPKAPK5Q8IW41 473 aa7.1□□□□□ -1.27
UPF2-201ENST00000356352 MAP7D3Q8IWC1 876 aa7.1□□□□□ -1.27
UPF2-201ENST00000356352 CTAGE3PQ8IX95 158 aa7.1□□□□□ -1.27
UPF2-201ENST00000356352 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.1□□□□□ -1.27
UPF2-201ENST00000356352 USP40Q9NVE5 1235 aa7.1□□□□□ -1.27
UPF2-201ENST00000356352 TBC1D7Q9P0N9 293 aa7.1□□□□□ -1.27
UPF2-201ENST00000356352 COL4A3BPQ9Y5P4 624 aa7.1□□□□□ -1.27
UPF2-201ENST00000356352 WDR17Q8IZU2 1322 aa7.1□□□□□ -1.27
UPF2-201ENST00000356352 ARHGEF37A1IGU5 675 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 KCNJ18B7U540 433 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 LAD1O00515 517 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 FOSP01100 380 aaPredicted RBP7.09□□□□□ -1.27
UPF2-201ENST00000356352 FBLN1P23142 703 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 CTNNA1P35221 906 aaKnown RBP7.09□□□□□ -1.27
UPF2-201ENST00000356352 KCNJ12Q14500 433 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 PPP2R5AQ15172 486 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 CCDC93Q567U6 631 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 RAB44Q7Z6P3 723 aaPredicted RBP7.09□□□□□ -1.27
UPF2-201ENST00000356352 BLIDQ8IZY5 108 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 K7ENM7 598 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 TXNDC9O14530 226 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 PPIP5K2O43314 1243 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 ADCY8P40145 1251 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 ZNF445P59923 1031 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 ADALQ6DHV7 355 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 OTUD7BQ6GQQ9 843 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 FAM71BQ8TC56 605 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 PSTPIP2Q9H939 334 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 BZW2Q9Y6E2 419 aaKnown RBP7.09□□□□□ -1.27
UPF2-201ENST00000356352 ZMYM6O95789 1325 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 F8W8V4 182 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 TRIM42Q8IWZ5 723 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 METTL13Q8N6R0 699 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 OR8K1Q8NGG5 319 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 SLF1Q9BQI6 1058 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 CUEDC2Q9H467 287 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 PANK4Q9NVE7 773 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 KIAA0232Q92628 1395 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 COL17A1Q9UMD9 1497 aaPredicted RBP7.09□□□□□ -1.27
UPF2-201ENST00000356352 ATP8B3O60423 1300 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 SPDYE16A6NNV3 312 aaPredicted RBP7.09□□□□□ -1.27
UPF2-201ENST00000356352 E7EWF7 191 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 TLR3O15455 904 aaKnown RBP7.09□□□□□ -1.27
UPF2-201ENST00000356352 ECM2O94769 699 aaPredicted RBP7.09□□□□□ -1.27
UPF2-201ENST00000356352 ATF2P15336 505 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 U2AF2P26368 475 aaKnown RBP eCLIP7.09□□□□□ -1.27
UPF2-201ENST00000356352 BAG6P46379 1132 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 MORC3Q14149 939 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 SPDYE2Q495Y8 402 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 CDC37L1Q7L3B6 337 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 ST7Q9NRC1 585 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 ANAPC5Q9UJX4 755 aa7.09□□□□□ -1.27
UPF2-201ENST00000356352 PASKQ96RG2 1323 aa7.09□□□□□ -1.28
UPF2-201ENST00000356352 A6NJR5 290 aa7.09□□□□□ -1.28
UPF2-201ENST00000356352 ZNF233A6NK53 670 aa7.09□□□□□ -1.28
UPF2-201ENST00000356352 KRIT1O00522 736 aa7.09□□□□□ -1.28
UPF2-201ENST00000356352 PRDM1O75626 825 aa7.09□□□□□ -1.28
UPF2-201ENST00000356352 GSTA1P08263 222 aa7.09□□□□□ -1.28
UPF2-201ENST00000356352 GSTA2P09210 222 aa7.09□□□□□ -1.28
UPF2-201ENST00000356352 OR52Z1P0C646 297 aa7.09□□□□□ -1.28
UPF2-201ENST00000356352 TMEM191BP0C7N4 346 aa7.09□□□□□ -1.28
UPF2-201ENST00000356352 TCP1P17987 556 aaKnown RBP7.09□□□□□ -1.28
UPF2-201ENST00000356352 CTSWP56202 376 aa7.09□□□□□ -1.28
UPF2-201ENST00000356352 RNASELQ05823 741 aaKnown RBP7.09□□□□□ -1.28
UPF2-201ENST00000356352 MTX1Q13505 466 aa7.09□□□□□ -1.28
UPF2-201ENST00000356352 NEK8Q86SG6 692 aa7.09□□□□□ -1.28
UPF2-201ENST00000356352 C2CD5Q86YS7 1000 aa7.09□□□□□ -1.28
UPF2-201ENST00000356352 ZNF654Q8IZM8 581 aa7.09□□□□□ -1.28
UPF2-201ENST00000356352 PSPC1Q8WXF1 523 aaKnown RBP7.09□□□□□ -1.28
UPF2-201ENST00000356352 DDX27Q96GQ7 796 aaKnown RBP7.09□□□□□ -1.28
UPF2-201ENST00000356352 SCYL1Q96KG9 808 aa7.09□□□□□ -1.28
UPF2-201ENST00000356352 SPZ1Q9BXG8 430 aa7.09□□□□□ -1.28
UPF2-201ENST00000356352 NCOA5Q9HCD5 579 aaKnown RBP7.09□□□□□ -1.28
UPF2-201ENST00000356352 THEGQ9P2T0 379 aa7.09□□□□□ -1.28
UPF2-201ENST00000356352 ARMCX3Q9UH62 379 aaPredicted RBP7.09□□□□□ -1.28
UPF2-201ENST00000356352 KDRP35968 1356 aa7.08□□□□□ -1.28
UPF2-201ENST00000356352 MED23Q9ULK4 1368 aa7.08□□□□□ -1.28
UPF2-201ENST00000356352 TESPA1A2RU30 521 aaPredicted RBP7.08□□□□□ -1.28
UPF2-201ENST00000356352 hCG_1984214I3L0E3 225 aa7.08□□□□□ -1.28
UPF2-201ENST00000356352 GTPBP6O43824 516 aaPredicted RBP7.08□□□□□ -1.28
UPF2-201ENST00000356352 TTC4O95801 387 aa7.08□□□□□ -1.28
UPF2-201ENST00000356352 LONP1P36776 959 aaKnown RBP7.08□□□□□ -1.28
UPF2-201ENST00000356352 KPNA2P52292 529 aaKnown RBP7.08□□□□□ -1.28
UPF2-201ENST00000356352 ITKQ08881 620 aa7.08□□□□□ -1.28
UPF2-201ENST00000356352 MUM1Q2TAK8 710 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms