RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 AGXT2Q9BYV1 514 aa10.64□□□□□ -0.71
USP4-202ENST00000351842 CWC22Q9HCG8 908 aaKnown RBP10.64□□□□□ -0.71
USP4-202ENST00000351842 PRR12Q9ULL5 1215 aa10.64□□□□□ -0.71
USP4-202ENST00000351842 SIPA1L1O43166 1804 aa10.64□□□□□ -0.71
USP4-202ENST00000351842 ADAMTS3O15072 1205 aa10.63□□□□□ -0.71
USP4-202ENST00000351842 CDKL5O76039 1030 aa10.63□□□□□ -0.71
USP4-202ENST00000351842 CFBP00751 764 aa10.63□□□□□ -0.71
USP4-202ENST00000351842 CALM1P0DP23 149 aa10.63□□□□□ -0.71
USP4-202ENST00000351842 CALM2P0DP24 149 aa10.63□□□□□ -0.71
USP4-202ENST00000351842 CALM3P0DP25 149 aa10.63□□□□□ -0.71
USP4-202ENST00000351842 GRM4Q14833 912 aa10.63□□□□□ -0.71
USP4-202ENST00000351842 UBE2SQ16763 222 aa10.63□□□□□ -0.71
USP4-202ENST00000351842 NOM1Q5C9Z4 860 aaKnown RBP10.63□□□□□ -0.71
USP4-202ENST00000351842 JAKMIP3Q5VZ66 844 aa10.63□□□□□ -0.71
USP4-202ENST00000351842 NSMFQ6X4W1 530 aa10.63□□□□□ -0.71
USP4-202ENST00000351842 FTOQ9C0B1 505 aaKnown RBP eCLIP10.63□□□□□ -0.71
USP4-202ENST00000351842 QRICH1Q2TAL8 776 aa10.63□□□□□ -0.71
USP4-202ENST00000351842 CCDC178Q5BJE1 867 aa10.63□□□□□ -0.71
USP4-202ENST00000351842 OXER1Q8TDS5 423 aa10.63□□□□□ -0.71
USP4-202ENST00000351842 FAM205CA6NFA0 338 aa10.63□□□□□ -0.71
USP4-202ENST00000351842 STX6O43752 255 aa10.63□□□□□ -0.71
USP4-202ENST00000351842 NTRK3Q16288 839 aa10.63□□□□□ -0.71
USP4-202ENST00000351842 SYDE2Q5VT97 1194 aa10.63□□□□□ -0.71
USP4-202ENST00000351842 TYW1BQ6NUM6 668 aa10.63□□□□□ -0.71
USP4-202ENST00000351842 METTL16Q86W50 562 aaKnown RBP10.63□□□□□ -0.71
USP4-202ENST00000351842 PURBQ96QR8 312 aaKnown RBP10.63□□□□□ -0.71
USP4-202ENST00000351842 JMJD4Q9H9V9 463 aa10.63□□□□□ -0.71
USP4-202ENST00000351842 TCP11L1Q9NUJ3 509 aa10.63□□□□□ -0.71
USP4-202ENST00000351842 BIN2Q9UBW5 565 aaPredicted RBP10.63□□□□□ -0.71
USP4-202ENST00000351842 AFG3L2Q9Y4W6 797 aa10.63□□□□□ -0.71
USP4-202ENST00000351842 PCDHA1Q9Y5I3 950 aa10.63□□□□□ -0.71
USP4-202ENST00000351842 LAMB1P07942 1786 aa10.63□□□□□ -0.71
USP4-202ENST00000351842 MYH4Q9Y623 1939 aa10.63□□□□□ -0.71
USP4-202ENST00000351842 TMEM88BA6NKF7 163 aa10.62□□□□□ -0.71
USP4-202ENST00000351842 BTBD18B2RXH4 712 aa10.62□□□□□ -0.71
USP4-202ENST00000351842 USP17L15C9J2P7 530 aa10.62□□□□□ -0.71
USP4-202ENST00000351842 USP17L13C9JLJ4 530 aa10.62□□□□□ -0.71
USP4-202ENST00000351842 USP17L11C9JVI0 530 aa10.62□□□□□ -0.71
USP4-202ENST00000351842 USP17L18D6R9N7 530 aa10.62□□□□□ -0.71
USP4-202ENST00000351842 USP17L22D6RA61 530 aa10.62□□□□□ -0.71
USP4-202ENST00000351842 USP17L17D6RBQ6 530 aa10.62□□□□□ -0.71
USP4-202ENST00000351842 USP17L19D6RCP7 530 aa10.62□□□□□ -0.71
USP4-202ENST00000351842 USP17L20D6RJB6 530 aa10.62□□□□□ -0.71
USP4-202ENST00000351842 FIBPO43427 364 aa10.62□□□□□ -0.71
USP4-202ENST00000351842 USP17L24Q0WX57 530 aa10.62□□□□□ -0.71
USP4-202ENST00000351842 USP17L6PQ6QN14 398 aa10.62□□□□□ -0.71
USP4-202ENST00000351842 TRMT1LQ7Z2T5 733 aaKnown RBP10.62□□□□□ -0.71
USP4-202ENST00000351842 TBC1D5Q92609 795 aa10.62□□□□□ -0.71
USP4-202ENST00000351842 SCN4AP35499 1836 aa10.62□□□□□ -0.71
USP4-202ENST00000351842 SORBS3O60504 671 aa10.62□□□□□ -0.71
USP4-202ENST00000351842 CCPG1Q9ULG6 757 aa10.62□□□□□ -0.71
USP4-202ENST00000351842 CNTNAP5Q8WYK1 1306 aa10.62□□□□□ -0.71
USP4-202ENST00000351842 PALM3A6NDB9 673 aaPredicted RBP10.62□□□□□ -0.71
USP4-202ENST00000351842 MYCP01106 439 aaPredicted RBP10.62□□□□□ -0.71
USP4-202ENST00000351842 IFNAR1P17181 557 aa10.62□□□□□ -0.71
USP4-202ENST00000351842 KRT40Q6A162 431 aa10.62□□□□□ -0.71
USP4-202ENST00000351842 WWC2Q6AWC2 1192 aa10.62□□□□□ -0.71
USP4-202ENST00000351842 NCAPG2Q86XI2 1143 aa10.62□□□□□ -0.71
USP4-202ENST00000351842 ANKRD13CQ8N6S4 541 aa10.62□□□□□ -0.71
USP4-202ENST00000351842 P2RX7Q99572 595 aaKnown RBP10.62□□□□□ -0.71
USP4-202ENST00000351842 R3HDMLQ9H3Y0 253 aa10.62□□□□□ -0.71
USP4-202ENST00000351842 RBM28Q9NW13 759 aaKnown RBP10.62□□□□□ -0.71
USP4-202ENST00000351842 ZNF112Q9UJU3 913 aa10.62□□□□□ -0.71
USP4-202ENST00000351842 LAMA2P24043 3122 aaKnown RBP10.61□□□□□ -0.71
USP4-202ENST00000351842 SPDYE5A6NIY4 337 aa10.61□□□□□ -0.71
USP4-202ENST00000351842 SCG2P13521 617 aa10.61□□□□□ -0.71
USP4-202ENST00000351842 SNAPC2Q13487 334 aa10.61□□□□□ -0.71
USP4-202ENST00000351842 CUL4AQ13619 759 aa10.61□□□□□ -0.71
USP4-202ENST00000351842 ASPRV1Q53RT3 343 aa10.61□□□□□ -0.71
USP4-202ENST00000351842 RGMBQ6NW40 437 aa10.61□□□□□ -0.71
USP4-202ENST00000351842 FAM43AQ8N2R8 423 aa10.61□□□□□ -0.71
USP4-202ENST00000351842 SLF1Q9BQI6 1058 aa10.61□□□□□ -0.71
USP4-202ENST00000351842 TMEM260Q9NX78 707 aa10.61□□□□□ -0.71
USP4-202ENST00000351842 CALML3P27482 149 aa10.61□□□□□ -0.71
USP4-202ENST00000351842 GPATCH4Q5T3I0 446 aaKnown RBP10.61□□□□□ -0.71
USP4-202ENST00000351842 KIAA1683Q9H0B3 1180 aa10.61□□□□□ -0.71
USP4-202ENST00000351842 PKD2L1Q9P0L9 805 aa10.61□□□□□ -0.71
USP4-202ENST00000351842 CPA4Q9UI42 421 aa10.61□□□□□ -0.71
USP4-202ENST00000351842 WDR19Q8NEZ3 1342 aa10.61□□□□□ -0.71
USP4-202ENST00000351842 FOCADQ5VW36 1801 aa10.61□□□□□ -0.71
USP4-202ENST00000351842 PPP1R11O60927 126 aaPredicted RBP10.6□□□□□ -0.71
USP4-202ENST00000351842 DEXIO95424 95 aa10.6□□□□□ -0.71
USP4-202ENST00000351842 USP14P54578 494 aa10.6□□□□□ -0.71
USP4-202ENST00000351842 SNRNP48Q6IEG0 339 aaKnown RBP10.6□□□□□ -0.71
USP4-202ENST00000351842 DIS3L2Q8IYB7 885 aaKnown RBP10.6□□□□□ -0.71
USP4-202ENST00000351842 BRI3BPQ8WY22 251 aa10.6□□□□□ -0.71
USP4-202ENST00000351842 SMCO2A6NFE2 343 aa10.6□□□□□ -0.71
USP4-202ENST00000351842 BTBD19C9JJ37 291 aa10.6□□□□□ -0.71
USP4-202ENST00000351842 PDHXO00330 501 aa10.6□□□□□ -0.71
USP4-202ENST00000351842 FMNL1O95466 1100 aaPredicted RBP10.6□□□□□ -0.71
USP4-202ENST00000351842 GNAQP50148 359 aa10.6□□□□□ -0.71
USP4-202ENST00000351842 HMGN5P82970 282 aaKnown RBP10.6□□□□□ -0.71
USP4-202ENST00000351842 MAP3K10Q02779 954 aa10.6□□□□□ -0.71
USP4-202ENST00000351842 PPATQ06203 517 aa10.6□□□□□ -0.71
USP4-202ENST00000351842 SAFBQ15424 915 aaKnown RBP eCLIP10.6□□□□□ -0.71
USP4-202ENST00000351842 ZRSR1Q15695 479 aaKnown RBP10.6□□□□□ -0.71
USP4-202ENST00000351842 PIK3AP1Q6ZUJ8 805 aa10.6□□□□□ -0.71
USP4-202ENST00000351842 CHURC1Q8WUH1 139 aa10.6□□□□□ -0.71
USP4-202ENST00000351842 ASCC2Q9H1I8 757 aaPredicted RBP10.6□□□□□ -0.71
USP4-202ENST00000351842 RIPK3Q9Y572 518 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms