RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 TMOD4Q9NZQ9 345 aa22.05■■□□□ 1.12
CHMP4A-201ENST00000347519 PRPF3O43395 683 aaKnown RBP22.04■■□□□ 1.12
CHMP4A-201ENST00000347519 ZNF157P51786 506 aaPredicted RBP22.04■■□□□ 1.12
CHMP4A-201ENST00000347519 SNAP25P60880 206 aa22.04■■□□□ 1.12
CHMP4A-201ENST00000347519 PKN1Q16512 942 aa22.04■■□□□ 1.12
CHMP4A-201ENST00000347519 SYDE2Q5VT97 1194 aa22.04■■□□□ 1.12
CHMP4A-201ENST00000347519 RGMBQ6NW40 437 aa22.04■■□□□ 1.12
CHMP4A-201ENST00000347519 MS4A4AQ96JQ5 239 aa22.04■■□□□ 1.12
CHMP4A-201ENST00000347519 RNF26Q9BY78 433 aaPredicted RBP22.04■■□□□ 1.12
CHMP4A-201ENST00000347519 ABT1Q9ULW3 272 aaKnown RBP22.04■■□□□ 1.12
CHMP4A-201ENST00000347519 STK36Q9NRP7 1315 aa22.04■■□□□ 1.12
CHMP4A-201ENST00000347519 SMARCA1P28370 1054 aa22.03■■□□□ 1.12
CHMP4A-201ENST00000347519 DDIT3P35638 169 aa22.03■■□□□ 1.12
CHMP4A-201ENST00000347519 FOSBP53539 338 aa22.03■■□□□ 1.12
CHMP4A-201ENST00000347519 SHISA4Q96DD7 197 aa22.03■■□□□ 1.12
CHMP4A-201ENST00000347519 PIGSQ96S52 555 aa22.03■■□□□ 1.12
CHMP4A-201ENST00000347519 TANGO6Q9C0B7 1094 aa22.03■■□□□ 1.12
CHMP4A-201ENST00000347519 PRR12Q9ULL5 1215 aa22.03■■□□□ 1.12
CHMP4A-201ENST00000347519 HMGN5P82970 282 aaKnown RBP22.02■■□□□ 1.12
CHMP4A-201ENST00000347519 IKQ13123 557 aaPredicted RBP22.02■■□□□ 1.12
CHMP4A-201ENST00000347519 SNAPC2Q13487 334 aa22.02■■□□□ 1.12
CHMP4A-201ENST00000347519 GPAT2Q6NUI2 795 aa22.02■■□□□ 1.12
CHMP4A-201ENST00000347519 SAMD1Q6SPF0 538 aaPredicted RBP22.02■■□□□ 1.12
CHMP4A-201ENST00000347519 MTMR8Q96EF0 704 aa22.02■■□□□ 1.12
CHMP4A-201ENST00000347519 GJB4Q9NTQ9 266 aa22.02■■□□□ 1.12
CHMP4A-201ENST00000347519 FEM1BQ9UK73 627 aa22.02■■□□□ 1.12
CHMP4A-201ENST00000347519 PLA2G6O60733 806 aa22.01■■□□□ 1.11
CHMP4A-201ENST00000347519 STAT2P52630 851 aa22.01■■□□□ 1.11
CHMP4A-201ENST00000347519 CATSPERGQ6ZRH7 1159 aa22.01■■□□□ 1.11
CHMP4A-201ENST00000347519 HOMER1Q86YM7 354 aa22.01■■□□□ 1.11
CHMP4A-201ENST00000347519 TRIM22Q8IYM9 498 aa22.01■■□□□ 1.11
CHMP4A-201ENST00000347519 PROCA1Q8NCQ7 364 aaPredicted RBP22.01■■□□□ 1.11
CHMP4A-201ENST00000347519 KIFC2Q96AC6 838 aa22.01■■□□□ 1.11
CHMP4A-201ENST00000347519 COL11A1P12107 1806 aaPredicted RBP22.01■■□□□ 1.11
CHMP4A-201ENST00000347519 SMCHD1A6NHR9 2005 aa22■■□□□ 1.11
CHMP4A-201ENST00000347519 FAM155AB1AL88 458 aaPredicted RBP22■■□□□ 1.11
CHMP4A-201ENST00000347519 PPP1R11O60927 126 aaPredicted RBP22■■□□□ 1.11
CHMP4A-201ENST00000347519 SLC10A3P09131 477 aa22■■□□□ 1.11
CHMP4A-201ENST00000347519 ZBTB48P10074 688 aaPredicted RBP22■■□□□ 1.11
CHMP4A-201ENST00000347519 IFFO2Q5TF58 517 aa22■■□□□ 1.11
CHMP4A-201ENST00000347519 FAM160B2Q86V87 743 aa22■■□□□ 1.11
CHMP4A-201ENST00000347519 CHURC1Q8WUH1 139 aa22■■□□□ 1.11
CHMP4A-201ENST00000347519 BRI3BPQ8WY22 251 aa22■■□□□ 1.11
CHMP4A-201ENST00000347519 USP17L15C9J2P7 530 aa21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 USP17L13C9JLJ4 530 aa21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 USP17L11C9JVI0 530 aa21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 USP17L18D6R9N7 530 aa21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 USP17L22D6RA61 530 aa21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 USP17L17D6RBQ6 530 aa21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 USP17L19D6RCP7 530 aa21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 USP17L20D6RJB6 530 aa21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 FLOT1O75955 427 aa21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 DEXIO95424 95 aa21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 TAL1P17542 331 aaPredicted RBP21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 USP17L24Q0WX57 530 aa21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 OTUD7BQ6GQQ9 843 aa21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 FAM184AQ8NB25 1140 aa21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 SLF1Q9BQI6 1058 aa21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 ALG1Q9BT22 464 aa21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 CWC22Q9HCG8 908 aaKnown RBP21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 PPP1R9AQ9ULJ8 1098 aa21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 CCL15-CCL14A0A0B4J2E2 113 aa21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 GTF2A2P52657 109 aa21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 AKAP17AQ02040 695 aaKnown RBP21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 PKP1Q13835 747 aa21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 CDC37Q16543 378 aaPredicted RBP21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 CCL15Q16663 113 aa21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 PFKFB3Q16875 520 aaPredicted RBP21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 QRICH1Q2TAL8 776 aa21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 POTEEQ6S8J3 1075 aa21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 GPKOWQ92917 476 aaPredicted RBP eCLIP21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 ATG4CQ96DT6 458 aa21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 RRP36Q96EU6 259 aaKnown RBP21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 AGTPBP1Q9UPW5 1226 aa21.99■■□□□ 1.11
CHMP4A-201ENST00000347519 PCNTO95613 3336 aa21.98■■□□□ 1.11
CHMP4A-201ENST00000347519 CETPP11597 493 aa21.98■■□□□ 1.11
CHMP4A-201ENST00000347519 SCG2P13521 617 aa21.98■■□□□ 1.11
CHMP4A-201ENST00000347519 SYT1P21579 422 aa21.98■■□□□ 1.11
CHMP4A-201ENST00000347519 HOXA7P31268 230 aaPredicted RBP21.98■■□□□ 1.11
CHMP4A-201ENST00000347519 DSG3P32926 999 aa21.98■■□□□ 1.11
CHMP4A-201ENST00000347519 GUCY1B3Q02153 619 aa21.98■■□□□ 1.11
CHMP4A-201ENST00000347519 TYW1BQ6NUM6 668 aa21.98■■□□□ 1.11
CHMP4A-201ENST00000347519 FASTKD5Q7L8L6 764 aaKnown RBP21.98■■□□□ 1.11
CHMP4A-201ENST00000347519 JMYQ8N9B5 988 aa21.98■■□□□ 1.11
CHMP4A-201ENST00000347519 HHIPL1Q96JK4 782 aa21.98■■□□□ 1.11
CHMP4A-201ENST00000347519 ZIC5Q96T25 663 aa21.98■■□□□ 1.11
CHMP4A-201ENST00000347519 PTPN18Q99952 460 aa21.98■■□□□ 1.11
CHMP4A-201ENST00000347519 RANBP17Q9H2T7 1088 aaKnown RBP21.98■■□□□ 1.11
CHMP4A-201ENST00000347519 BTBD19C9JJ37 291 aa21.97■■□□□ 1.11
CHMP4A-201ENST00000347519 WWC2Q6AWC2 1192 aa21.97■■□□□ 1.11
CHMP4A-201ENST00000347519 CYP4F22Q6NT55 531 aa21.97■■□□□ 1.11
CHMP4A-201ENST00000347519 PRPF38AQ8NAV1 312 aaKnown RBP21.97■■□□□ 1.11
CHMP4A-201ENST00000347519 CREBZFQ9NS37 354 aa21.97■■□□□ 1.11
CHMP4A-201ENST00000347519 VPS54Q9P1Q0 977 aa21.97■■□□□ 1.11
CHMP4A-201ENST00000347519 A0A0G2JMZ2 1700 aa21.96■■□□□ 1.11
CHMP4A-201ENST00000347519 PNMA6FA0A0J9YX94 578 aa21.96■■□□□ 1.11
CHMP4A-201ENST00000347519 ZBTB5O15062 677 aa21.96■■□□□ 1.11
CHMP4A-201ENST00000347519 COG2Q14746 738 aa21.96■■□□□ 1.11
CHMP4A-201ENST00000347519 LARP1BQ659C4 914 aaKnown RBP21.96■■□□□ 1.11
CHMP4A-201ENST00000347519 CCDC174Q6PII3 467 aa21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms