RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 TOGARAM2Q6ZUX3 1019 aa17.5■□□□□ 0.39
UPF3B-202ENST00000345865 DAGLBQ8NCG7 672 aa17.5■□□□□ 0.39
UPF3B-202ENST00000345865 DNAI1Q9UI46 699 aa17.5■□□□□ 0.39
UPF3B-202ENST00000345865 CCDC194A0A1B0GVG4 234 aa17.49■□□□□ 0.39
UPF3B-202ENST00000345865 GTPBP6O43824 516 aaPredicted RBP17.49■□□□□ 0.39
UPF3B-202ENST00000345865 STX10O60499 249 aa17.49■□□□□ 0.39
UPF3B-202ENST00000345865 ST5P78524 1137 aa17.49■□□□□ 0.39
UPF3B-202ENST00000345865 USP17L2Q6R6M4 530 aa17.49■□□□□ 0.39
UPF3B-202ENST00000345865 FCHSD1Q86WN1 690 aa17.49■□□□□ 0.39
UPF3B-202ENST00000345865 LRRC15Q8TF66 581 aa17.49■□□□□ 0.39
UPF3B-202ENST00000345865 ERO1AQ96HE7 468 aa17.49■□□□□ 0.39
UPF3B-202ENST00000345865 RBM17Q96I25 401 aaKnown RBP17.49■□□□□ 0.39
UPF3B-202ENST00000345865 AFF2P51816 1311 aa17.49■□□□□ 0.39
UPF3B-202ENST00000345865 NEDD1Q8NHV4 660 aa17.49■□□□□ 0.39
UPF3B-202ENST00000345865 PODXL2Q9NZ53 605 aa17.49■□□□□ 0.39
UPF3B-202ENST00000345865 ELF2Q15723 593 aa17.48■□□□□ 0.39
UPF3B-202ENST00000345865 RRAGBQ5VZM2 374 aa17.48■□□□□ 0.39
UPF3B-202ENST00000345865 CEP95Q96GE4 821 aa17.48■□□□□ 0.39
UPF3B-202ENST00000345865 FAM163AQ96GL9 167 aaPredicted RBP17.48■□□□□ 0.39
UPF3B-202ENST00000345865 GAKO14976 1311 aa17.48■□□□□ 0.39
UPF3B-202ENST00000345865 SPDYE4A6NLX3 237 aa17.48■□□□□ 0.39
UPF3B-202ENST00000345865 CCP110O43303 1012 aa17.48■□□□□ 0.39
UPF3B-202ENST00000345865 BBOX1O75936 387 aa17.48■□□□□ 0.39
UPF3B-202ENST00000345865 MTF1Q14872 753 aa17.48■□□□□ 0.39
UPF3B-202ENST00000345865 DISC1Q9NRI5 854 aa17.48■□□□□ 0.39
UPF3B-202ENST00000345865 GDAQ9Y2T3 454 aa17.48■□□□□ 0.39
UPF3B-202ENST00000345865 RPN1P04843 607 aaKnown RBP17.47■□□□□ 0.39
UPF3B-202ENST00000345865 HOXA10P31260 410 aaPredicted RBP17.47■□□□□ 0.39
UPF3B-202ENST00000345865 CBX1P83916 185 aa17.47■□□□□ 0.39
UPF3B-202ENST00000345865 RBL2Q08999 1139 aa17.47■□□□□ 0.39
UPF3B-202ENST00000345865 MEX3CQ5U5Q3 659 aaKnown RBP17.47■□□□□ 0.39
UPF3B-202ENST00000345865 DTHD1Q6ZMT9 781 aa17.47■□□□□ 0.39
UPF3B-202ENST00000345865 CCDC148Q8NFR7 591 aa17.47■□□□□ 0.39
UPF3B-202ENST00000345865 SPZ1Q9BXG8 430 aa17.47■□□□□ 0.39
UPF3B-202ENST00000345865 ZMYND12Q9H0C1 365 aa17.47■□□□□ 0.39
UPF3B-202ENST00000345865 MAPK8IP1Q9UQF2 711 aa17.47■□□□□ 0.39
UPF3B-202ENST00000345865 LTBP1Q14766 1721 aa17.47■□□□□ 0.39
UPF3B-202ENST00000345865 PHLPP2Q6ZVD8 1323 aa17.47■□□□□ 0.39
UPF3B-202ENST00000345865 POLRMTO00411 1230 aaKnown RBP17.47■□□□□ 0.39
UPF3B-202ENST00000345865 TUBB4AP04350 444 aa17.47■□□□□ 0.39
UPF3B-202ENST00000345865 STAT6P42226 847 aa17.47■□□□□ 0.39
UPF3B-202ENST00000345865 IGSF22Q8N9C0 903 aa17.47■□□□□ 0.39
UPF3B-202ENST00000345865 PYM1Q9BRP8 204 aaKnown RBP17.47■□□□□ 0.39
UPF3B-202ENST00000345865 DESI2Q9BSY9 194 aa17.47■□□□□ 0.39
UPF3B-202ENST00000345865 C6orf229H3BNL8 230 aa17.46■□□□□ 0.39
UPF3B-202ENST00000345865 ZNF658Q5TYW1 1059 aaPredicted RBP17.46■□□□□ 0.39
UPF3B-202ENST00000345865 GALNT17Q6IS24 598 aa17.46■□□□□ 0.39
UPF3B-202ENST00000345865 FAM177A1Q8N128 213 aaPredicted RBP17.46■□□□□ 0.39
UPF3B-202ENST00000345865 CPLX3Q8WVH0 158 aa17.46■□□□□ 0.39
UPF3B-202ENST00000345865 PLIN2Q99541 437 aa17.46■□□□□ 0.39
UPF3B-202ENST00000345865 ZNF287Q9HBT7 754 aa17.46■□□□□ 0.39
UPF3B-202ENST00000345865 DAGLAQ9Y4D2 1042 aa17.46■□□□□ 0.39
UPF3B-202ENST00000345865 AKR1B15C9JRZ8 316 aaPredicted RBP17.46■□□□□ 0.38
UPF3B-202ENST00000345865 ZSCAN12O43309 604 aa17.46■□□□□ 0.38
UPF3B-202ENST00000345865 PARP1P09874 1014 aaKnown RBP17.46■□□□□ 0.38
UPF3B-202ENST00000345865 CCT6AP40227 531 aaKnown RBP17.46■□□□□ 0.38
UPF3B-202ENST00000345865 PRCPP42785 496 aa17.46■□□□□ 0.38
UPF3B-202ENST00000345865 NOVP48745 357 aa17.46■□□□□ 0.38
UPF3B-202ENST00000345865 KRT31Q15323 416 aa17.46■□□□□ 0.38
UPF3B-202ENST00000345865 KMT5BQ4FZB7 885 aa17.46■□□□□ 0.38
UPF3B-202ENST00000345865 CERS3Q8IU89 383 aa17.46■□□□□ 0.38
UPF3B-202ENST00000345865 CGNQ9P2M7 1197 aaKnown RBP17.46■□□□□ 0.38
UPF3B-202ENST00000345865 RWDD2AQ9UIY3 292 aa17.46■□□□□ 0.38
UPF3B-202ENST00000345865 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.46■□□□□ 0.381e-6■■■■□ 19.8
UPF3B-202ENST00000345865 FOCADQ5VW36 1801 aa17.45■□□□□ 0.38
UPF3B-202ENST00000345865 SOWAHDA6NJG2 315 aa17.45■□□□□ 0.38
UPF3B-202ENST00000345865 NAPAP54920 295 aa17.45■□□□□ 0.38
UPF3B-202ENST00000345865 GTF2IP78347 998 aa17.45■□□□□ 0.38
UPF3B-202ENST00000345865 NELFBQ8WX92 580 aa17.45■□□□□ 0.38
UPF3B-202ENST00000345865 WDR24Q96S15 920 aa17.45■□□□□ 0.38
UPF3B-202ENST00000345865 LZTS2Q9BRK4 669 aa17.45■□□□□ 0.38
UPF3B-202ENST00000345865 VAT1LQ9HCJ6 419 aa17.45■□□□□ 0.38
UPF3B-202ENST00000345865 KLRG2A4D1S0 409 aaPredicted RBP17.44■□□□□ 0.38
UPF3B-202ENST00000345865 LRRC10BA6NIK2 292 aa17.44■□□□□ 0.38
UPF3B-202ENST00000345865 USP17L5A8MUK1 530 aa17.44■□□□□ 0.38
UPF3B-202ENST00000345865 PLCG2P16885 1265 aa17.44■□□□□ 0.38
UPF3B-202ENST00000345865 TXLNAP40222 546 aa17.44■□□□□ 0.38
UPF3B-202ENST00000345865 PAK1Q13153 545 aa17.44■□□□□ 0.38
UPF3B-202ENST00000345865 ERCC6LQ2NKX8 1250 aa17.44■□□□□ 0.38
UPF3B-202ENST00000345865 PANX2Q96RD6 677 aa17.44■□□□□ 0.38
UPF3B-202ENST00000345865 CTAGE1Q96RT6 745 aa17.44■□□□□ 0.38
UPF3B-202ENST00000345865 CRAMP1Q96RY5 1269 aa17.44■□□□□ 0.38
UPF3B-202ENST00000345865 PIGSQ96S52 555 aa17.44■□□□□ 0.38
UPF3B-202ENST00000345865 UBA5Q9GZZ9 404 aa17.44■□□□□ 0.38
UPF3B-202ENST00000345865 A0A0U1RQJ8 604 aa17.44■□□□□ 0.38
UPF3B-202ENST00000345865 SMCO2A6NFE2 343 aa17.44■□□□□ 0.38
UPF3B-202ENST00000345865 RIMBP2O15034 1052 aa17.44■□□□□ 0.38
UPF3B-202ENST00000345865 KLRC4O43908 158 aa17.44■□□□□ 0.38
UPF3B-202ENST00000345865 GYPCP04921 128 aa17.44■□□□□ 0.38
UPF3B-202ENST00000345865 RAD9BQ6WBX8 426 aa17.44■□□□□ 0.38
UPF3B-202ENST00000345865 ATRIPQ8WXE1 791 aa17.44■□□□□ 0.38
UPF3B-202ENST00000345865 LIMA1Q9UHB6 759 aaKnown RBP17.44■□□□□ 0.38
UPF3B-202ENST00000345865 PARP3Q9Y6F1 533 aa17.44■□□□□ 0.38
UPF3B-202ENST00000345865 LRRC37AA6NMS7 1700 aa17.43■□□□□ 0.38
UPF3B-202ENST00000345865 RNF225M0QZC1 329 aaPredicted RBP17.43■□□□□ 0.38
UPF3B-202ENST00000345865 CASP14P31944 242 aa17.43■□□□□ 0.38
UPF3B-202ENST00000345865 FXR1P51114 621 aaKnown RBP eCLIP17.43■□□□□ 0.38
UPF3B-202ENST00000345865 FBXO38Q6PIJ6 1188 aa17.43■□□□□ 0.38
UPF3B-202ENST00000345865 TBC1D22AQ8WUA7 517 aa17.43■□□□□ 0.38
UPF3B-202ENST00000345865 CCSER1Q9C0I3 900 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms