RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 AMOTL1Q8IY63 956 aa10.67□□□□□ -0.7
ATG4A-202ENST00000345734 TRIM22Q8IYM9 498 aa10.67□□□□□ -0.7
ATG4A-202ENST00000345734 RNF214Q8ND24 703 aa10.67□□□□□ -0.7
ATG4A-202ENST00000345734 BICD2Q8TD16 824 aa10.67□□□□□ -0.7
ATG4A-202ENST00000345734 WNT2BQ93097 391 aa10.67□□□□□ -0.7
ATG4A-202ENST00000345734 EYA3Q99504 573 aa10.67□□□□□ -0.7
ATG4A-202ENST00000345734 MKNK2Q9HBH9 465 aa10.67□□□□□ -0.7
ATG4A-202ENST00000345734 WBP1LQ9NX94 342 aa10.67□□□□□ -0.7
ATG4A-202ENST00000345734 DACT1Q9NYF0 836 aa10.67□□□□□ -0.7
ATG4A-202ENST00000345734 RTEL1Q9NZ71 1219 aa10.67□□□□□ -0.7
ATG4A-202ENST00000345734 KCNJ14Q9UNX9 436 aa10.67□□□□□ -0.7
ATG4A-202ENST00000345734 hCG_1642624A0A1W2PR95 340 aa10.66□□□□□ -0.7
ATG4A-202ENST00000345734 USP17L3A6NCW0 530 aa10.66□□□□□ -0.7
ATG4A-202ENST00000345734 USP17L4A6NCW7 530 aa10.66□□□□□ -0.7
ATG4A-202ENST00000345734 NR1I2O75469 434 aa10.66□□□□□ -0.7
ATG4A-202ENST00000345734 BAG6P46379 1132 aa10.66□□□□□ -0.7
ATG4A-202ENST00000345734 SF3B2Q13435 895 aaKnown RBP10.66□□□□□ -0.7
ATG4A-202ENST00000345734 TRIM29Q14134 588 aa10.66□□□□□ -0.7
ATG4A-202ENST00000345734 CAMK4Q16566 473 aa10.66□□□□□ -0.7
ATG4A-202ENST00000345734 LCE2DQ5TA82 110 aaPredicted RBP10.66□□□□□ -0.7
ATG4A-202ENST00000345734 USP17L1Q7RTZ2 530 aa10.66□□□□□ -0.7
ATG4A-202ENST00000345734 RGS22Q8NE09 1264 aa10.66□□□□□ -0.7
ATG4A-202ENST00000345734 C7orf43Q8WVR3 580 aa10.66□□□□□ -0.7
ATG4A-202ENST00000345734 CNKSR1Q969H4 720 aa10.66□□□□□ -0.7
ATG4A-202ENST00000345734 SUGT1Q9Y2Z0 365 aa10.66□□□□□ -0.7
ATG4A-202ENST00000345734 DDAH1O94760 285 aa10.66□□□□□ -0.7
ATG4A-202ENST00000345734 DEXIO95424 95 aa10.66□□□□□ -0.7
ATG4A-202ENST00000345734 LINC00301Q8NCQ3 95 aa10.66□□□□□ -0.7
ATG4A-202ENST00000345734 WASF1Q92558 559 aa10.66□□□□□ -0.7
ATG4A-202ENST00000345734 SHISA4Q96DD7 197 aa10.66□□□□□ -0.7
ATG4A-202ENST00000345734 MAFBQ9Y5Q3 323 aaPredicted RBP10.66□□□□□ -0.7
ATG4A-202ENST00000345734 ZNF646O15015 1829 aaPredicted RBP10.66□□□□□ -0.7
ATG4A-202ENST00000345734 LETM1O95202 739 aaPredicted RBP10.65□□□□□ -0.7
ATG4A-202ENST00000345734 RASA1P20936 1047 aa10.65□□□□□ -0.7
ATG4A-202ENST00000345734 ME1P48163 572 aa10.65□□□□□ -0.7
ATG4A-202ENST00000345734 CDK8P49336 464 aa10.65□□□□□ -0.7
ATG4A-202ENST00000345734 PICALMQ13492 652 aa10.65□□□□□ -0.7
ATG4A-202ENST00000345734 GNL2Q13823 731 aaKnown RBP10.65□□□□□ -0.7
ATG4A-202ENST00000345734 PPP2R5BQ15173 497 aa10.65□□□□□ -0.7
ATG4A-202ENST00000345734 STK38Q15208 465 aa10.65□□□□□ -0.7
ATG4A-202ENST00000345734 TMTC3Q6ZXV5 915 aa10.65□□□□□ -0.7
ATG4A-202ENST00000345734 CCAR1Q8IX12 1150 aaKnown RBP10.65□□□□□ -0.7
ATG4A-202ENST00000345734 ZNF444Q8N0Y2 327 aaPredicted RBP10.65□□□□□ -0.7
ATG4A-202ENST00000345734 THAP11Q96EK4 314 aa10.65□□□□□ -0.7
ATG4A-202ENST00000345734 NUP62CLQ9H1M0 184 aa10.65□□□□□ -0.7
ATG4A-202ENST00000345734 GOLPH3LQ9H4A5 285 aa10.65□□□□□ -0.7
ATG4A-202ENST00000345734 RBM28Q9NW13 759 aaKnown RBP10.65□□□□□ -0.7
ATG4A-202ENST00000345734 PCDHA7Q9UN72 937 aa10.65□□□□□ -0.7
ATG4A-202ENST00000345734 BTBD18B2RXH4 712 aa10.64□□□□□ -0.71
ATG4A-202ENST00000345734 ECE2O60344 883 aa10.64□□□□□ -0.71
ATG4A-202ENST00000345734 TSPY3P0CV98 308 aa10.64□□□□□ -0.71
ATG4A-202ENST00000345734 TSPY8P0CW00 308 aa10.64□□□□□ -0.71
ATG4A-202ENST00000345734 CALM1P0DP23 149 aa10.64□□□□□ -0.71
ATG4A-202ENST00000345734 CALM2P0DP24 149 aa10.64□□□□□ -0.71
ATG4A-202ENST00000345734 CALM3P0DP25 149 aa10.64□□□□□ -0.71
ATG4A-202ENST00000345734 U2AF2P26368 475 aaKnown RBP eCLIP10.64□□□□□ -0.712e-7■□□□□ 9.2
ATG4A-202ENST00000345734 PKN1Q16512 942 aa10.64□□□□□ -0.71
ATG4A-202ENST00000345734 AOC3Q16853 763 aa10.64□□□□□ -0.71
ATG4A-202ENST00000345734 ANO1Q5XXA6 986 aa10.64□□□□□ -0.71
ATG4A-202ENST00000345734 C16orf86Q6ZW13 317 aa10.64□□□□□ -0.71
ATG4A-202ENST00000345734 PODNQ7Z5L7 613 aa10.64□□□□□ -0.71
ATG4A-202ENST00000345734 SRBD1Q8N5C6 995 aaKnown RBP10.64□□□□□ -0.71
ATG4A-202ENST00000345734 FUCA2Q9BTY2 467 aa10.64□□□□□ -0.71
ATG4A-202ENST00000345734 PRR14Q9BWN1 585 aa10.64□□□□□ -0.71
ATG4A-202ENST00000345734 RNF26Q9BY78 433 aaPredicted RBP10.64□□□□□ -0.71
ATG4A-202ENST00000345734 DDX4Q9NQI0 724 aaKnown RBP10.64□□□□□ -0.71
ATG4A-202ENST00000345734 FKBPLQ9UIM3 349 aa10.64□□□□□ -0.71
ATG4A-202ENST00000345734 TSR3Q9UJK0 312 aaKnown RBP10.64□□□□□ -0.71
ATG4A-202ENST00000345734 V9GY48 417 aaPredicted RBP10.64□□□□□ -0.71
ATG4A-202ENST00000345734 MYH8P13535 1937 aa10.64□□□□□ -0.71
ATG4A-202ENST00000345734 SNED1Q8TER0 1413 aa10.64□□□□□ -0.71
ATG4A-202ENST00000345734 WDHD1O75717 1129 aaPredicted RBP10.64□□□□□ -0.71
ATG4A-202ENST00000345734 MMP1P03956 469 aa10.64□□□□□ -0.71
ATG4A-202ENST00000345734 BRD2P25440 801 aaKnown RBP10.64□□□□□ -0.71
ATG4A-202ENST00000345734 AKAP17AQ02040 695 aaKnown RBP10.64□□□□□ -0.71
ATG4A-202ENST00000345734 CTCFLQ8NI51 663 aaPredicted RBP10.64□□□□□ -0.71
ATG4A-202ENST00000345734 IPO4Q8TEX9 1081 aaKnown RBP10.64□□□□□ -0.71
ATG4A-202ENST00000345734 PDCL3Q9H2J4 239 aa10.64□□□□□ -0.71
ATG4A-202ENST00000345734 USP40Q9NVE5 1235 aa10.64□□□□□ -0.71
ATG4A-202ENST00000345734 PCDHAC2Q9Y5I4 1007 aa10.64□□□□□ -0.71
ATG4A-202ENST00000345734 CNTNAP5Q8WYK1 1306 aa10.63□□□□□ -0.71
ATG4A-202ENST00000345734 C10orf71Q711Q0 1435 aa10.63□□□□□ -0.71
ATG4A-202ENST00000345734 SPTLC2O15270 562 aa10.63□□□□□ -0.71
ATG4A-202ENST00000345734 PRPF3O43395 683 aaKnown RBP10.63□□□□□ -0.71
ATG4A-202ENST00000345734 C21orf2O43822 256 aa10.63□□□□□ -0.71
ATG4A-202ENST00000345734 YEATS4O95619 227 aa10.63□□□□□ -0.71
ATG4A-202ENST00000345734 F12P00748 615 aaPredicted RBP10.63□□□□□ -0.71
ATG4A-202ENST00000345734 SF3A1Q15459 793 aaKnown RBP10.63□□□□□ -0.71
ATG4A-202ENST00000345734 MAP3K11Q16584 847 aa10.63□□□□□ -0.71
ATG4A-202ENST00000345734 DACT2Q5SW24 774 aa10.63□□□□□ -0.71
ATG4A-202ENST00000345734 APOBEC3HQ6NTF7 200 aaKnown RBP10.63□□□□□ -0.71
ATG4A-202ENST00000345734 CDC42EP5Q6NZY7 148 aa10.63□□□□□ -0.71
ATG4A-202ENST00000345734 DGKHQ86XP1 1220 aa10.63□□□□□ -0.71
ATG4A-202ENST00000345734 KIAA0825Q8IV33 1275 aa10.63□□□□□ -0.71
ATG4A-202ENST00000345734 CKAP2LQ8IYA6 745 aa10.63□□□□□ -0.71
ATG4A-202ENST00000345734 DIS3L2Q8IYB7 885 aaKnown RBP10.63□□□□□ -0.71
ATG4A-202ENST00000345734 FSIP1Q8NA03 581 aa10.63□□□□□ -0.71
ATG4A-202ENST00000345734 ANKS1AQ92625 1134 aa10.63□□□□□ -0.71
ATG4A-202ENST00000345734 TNMDQ9H2S6 317 aa10.63□□□□□ -0.71
ATG4A-202ENST00000345734 CLSTN2Q9H4D0 955 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms