RNA–Protein interactions for RNA: ENST00000344113.8

SYNE2-202, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE2, Length 21,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-202ENST00000344113 ATG3Q9NT62 314 aa4.13□□□□□ -1.75
SYNE2-202ENST00000344113 TTF2Q9UNY4 1162 aaKnown RBP4.13□□□□□ -1.75
SYNE2-202ENST00000344113 ACTN4O43707 911 aaKnown RBP4.13□□□□□ -1.75
SYNE2-202ENST00000344113 M6PRP20645 277 aa4.13□□□□□ -1.75
SYNE2-202ENST00000344113 FAM81BQ96LP2 452 aa4.13□□□□□ -1.75
SYNE2-202ENST00000344113 GSDMAQ96QA5 445 aa4.13□□□□□ -1.75
SYNE2-202ENST00000344113 GID8Q9NWU2 228 aa4.13□□□□□ -1.75
SYNE2-202ENST00000344113 CDK13Q14004 1512 aaKnown RBP4.13□□□□□ -1.75
SYNE2-202ENST00000344113 ACADSP16219 412 aa4.13□□□□□ -1.75
SYNE2-202ENST00000344113 TSNARE1Q96NA8 513 aa4.13□□□□□ -1.75
SYNE2-202ENST00000344113 MAF1Q9H063 256 aa4.13□□□□□ -1.75
SYNE2-202ENST00000344113 TMOD4Q9NZQ9 345 aa4.13□□□□□ -1.75
SYNE2-202ENST00000344113 ME1P48163 572 aa4.13□□□□□ -1.75
SYNE2-202ENST00000344113 PHEXP78562 749 aa4.13□□□□□ -1.75
SYNE2-202ENST00000344113 LINC00299Q6ZSB3 139 aa4.13□□□□□ -1.75
SYNE2-202ENST00000344113 PPME1Q9Y570 386 aa4.13□□□□□ -1.75
SYNE2-202ENST00000344113 KIF22Q14807 665 aa4.13□□□□□ -1.75
SYNE2-202ENST00000344113 PRR23AA6NEV1 266 aa4.13□□□□□ -1.75
SYNE2-202ENST00000344113 ECM2O94769 699 aaPredicted RBP4.13□□□□□ -1.75
SYNE2-202ENST00000344113 INPP1P49441 399 aa4.13□□□□□ -1.75
SYNE2-202ENST00000344113 ELOA2Q8IYF1 753 aaPredicted RBP4.13□□□□□ -1.75
SYNE2-202ENST00000344113 TUBGCP3Q96CW5 907 aa4.13□□□□□ -1.75
SYNE2-202ENST00000344113 FGD4Q96M96 766 aa4.13□□□□□ -1.75
SYNE2-202ENST00000344113 CYTH1Q15438 398 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 ANKRD20A4Q4UJ75 823 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 ANKRD20A2Q5SQ80 823 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 ANKRD20A1Q5TYW2 823 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 CHD1LQ86WJ1 897 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 SCAIQ8N9R8 606 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 BAG3O95817 575 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 BNC1Q01954 994 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 FLIIQ13045 1269 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 NDUFAF5Q5TEU4 345 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 VPS52Q8N1B4 723 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 GABPB2Q8TAK5 448 aaPredicted RBP4.12□□□□□ -1.75
SYNE2-202ENST00000344113 RAB21Q9UL25 225 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 ZNF777Q9ULD5 760 aaPredicted RBP4.12□□□□□ -1.75
SYNE2-202ENST00000344113 TIMM44O43615 452 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 ILF2Q12905 390 aaKnown RBP4.12□□□□□ -1.75
SYNE2-202ENST00000344113 KRI1Q8N9T8 703 aaKnown RBP4.12□□□□□ -1.75
SYNE2-202ENST00000344113 GRAMD1AQ96CP6 724 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 TRPC7Q9HCX4 862 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 HNRNPRO43390 633 aaKnown RBP4.12□□□□□ -1.75
SYNE2-202ENST00000344113 SHOX2O60902 331 aaPredicted RBP4.12□□□□□ -1.75
SYNE2-202ENST00000344113 LIG3P49916 1009 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 POLGP54098 1239 aaPredicted RBP4.12□□□□□ -1.75
SYNE2-202ENST00000344113 MAPRE2Q15555 327 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 IMPG2Q9BZV3 1241 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 KIF21BO75037 1637 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 ZNF165P49910 485 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 CSGALNACT2Q8N6G5 542 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 LMBRD1Q9NUN5 540 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 SYCE3A1L190 88 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 SPDYCQ5MJ68 293 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 AGXT2Q9BYV1 514 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 CHMP2BQ9UQN3 213 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 NPATQ14207 1427 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 NKTRP30414 1462 aaKnown RBP4.12□□□□□ -1.75
SYNE2-202ENST00000344113 PRDM1O75626 825 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 CYP2E1P05181 493 aaPredicted RBP4.12□□□□□ -1.75
SYNE2-202ENST00000344113 IGF1RP08069 1367 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 CCDC15Q0P6D6 951 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 LGSNQ5TDP6 509 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 AP4S1Q9Y587 144 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 ERBB4Q15303 1308 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 TOMM70O94826 608 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 PPP2R3AQ06190 1150 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 SMARCAD1Q9H4L7 1026 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 UTP11Q9Y3A2 253 aaKnown RBP4.12□□□□□ -1.75
SYNE2-202ENST00000344113 PCDHB2Q9Y5E7 798 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 NOP56O00567 594 aaKnown RBP4.12□□□□□ -1.75
SYNE2-202ENST00000344113 DR1Q01658 176 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 ZNF710Q8N1W2 664 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 B4GALNT2Q8NHY0 566 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 SKA1Q96BD8 255 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 PVALEFA0A1B0GWK0 134 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 HIC2Q96JB3 615 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 HAUS7Q99871 368 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 MCM8Q9UJA3 840 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 RTN2O75298 545 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 GHRP10912 638 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 RILPL1Q5EBL4 403 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 FKBP14Q9NWM8 211 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 MAP2K7O14733 419 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 CAPN9O14815 690 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 KRT86O43790 486 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 USP11P51784 963 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 DEFA1P59665 94 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 DEFA3P59666 94 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 RBM41Q96IZ5 413 aaKnown RBP4.12□□□□□ -1.75
SYNE2-202ENST00000344113 PHACTR1Q9C0D0 580 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 PDCD4Q53EL6 469 aaKnown RBP4.12□□□□□ -1.75
SYNE2-202ENST00000344113 GOLPH3LQ9H4A5 285 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 CYP46A1Q9Y6A2 500 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 IKBIPQ70UQ0 350 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 ANAPC5Q9UJX4 755 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 KLC1Q07866 573 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 RCN1Q15293 331 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 LRRC27Q9C0I9 530 aa4.12□□□□□ -1.75
SYNE2-202ENST00000344113 DCDC2Q9UHG0 476 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms