RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 PI16Q6UXB8 463 aa12.31□□□□□ -0.44
RTN3-201ENST00000338850 MFSD6Q6ZSS7 791 aa12.31□□□□□ -0.44
RTN3-201ENST00000338850 VSTM4Q8IW00 320 aa12.31□□□□□ -0.44
RTN3-201ENST00000338850 MLKLQ8NB16 471 aa12.31□□□□□ -0.44
RTN3-201ENST00000338850 ZNF397Q8NF99 534 aaPredicted RBP12.31□□□□□ -0.44
RTN3-201ENST00000338850 SPATA20Q8TB22 786 aa12.31□□□□□ -0.44
RTN3-201ENST00000338850 VEZTQ9HBM0 779 aa12.31□□□□□ -0.44
RTN3-201ENST00000338850 OGFRQ9NZT2 677 aa12.31□□□□□ -0.44
RTN3-201ENST00000338850 IFNKQ9P0W0 207 aa12.31□□□□□ -0.44
RTN3-201ENST00000338850 SERPINA10Q9UK55 444 aa12.31□□□□□ -0.44
RTN3-201ENST00000338850 TTF2Q9UNY4 1162 aaKnown RBP12.31□□□□□ -0.44
RTN3-201ENST00000338850 SEMA3EO15041 775 aa12.3□□□□□ -0.44
RTN3-201ENST00000338850 SLU7O95391 586 aaKnown RBP12.3□□□□□ -0.44
RTN3-201ENST00000338850 TBC1D8O95759 1140 aa12.3□□□□□ -0.44
RTN3-201ENST00000338850 SARSP49591 514 aaKnown RBP12.3□□□□□ -0.44
RTN3-201ENST00000338850 GABPB1Q06547 395 aaPredicted RBP12.3□□□□□ -0.44
RTN3-201ENST00000338850 SREBF2Q12772 1141 aa12.3□□□□□ -0.44
RTN3-201ENST00000338850 RASGRF1Q13972 1273 aa12.3□□□□□ -0.44
RTN3-201ENST00000338850 RASA3Q14644 834 aa12.3□□□□□ -0.44
RTN3-201ENST00000338850 GRIK5Q16478 980 aa12.3□□□□□ -0.44
RTN3-201ENST00000338850 RTN1Q16799 776 aa12.3□□□□□ -0.44
RTN3-201ENST00000338850 SUPT20HL1Q3ZLR7 823 aa12.3□□□□□ -0.44
RTN3-201ENST00000338850 SPDYE2Q495Y8 402 aa12.3□□□□□ -0.44
RTN3-201ENST00000338850 NBPF12Q5TAG4 269 aaPredicted RBP12.3□□□□□ -0.44
RTN3-201ENST00000338850 E4F1Q66K89 784 aaPredicted RBP12.3□□□□□ -0.44
RTN3-201ENST00000338850 OTUD7BQ6GQQ9 843 aa12.3□□□□□ -0.44
RTN3-201ENST00000338850 ARMCX5Q6P1M9 558 aa12.3□□□□□ -0.44
RTN3-201ENST00000338850 CTU1Q7Z7A3 348 aaKnown RBP12.3□□□□□ -0.44
RTN3-201ENST00000338850 FAM177A1Q8N128 213 aaPredicted RBP12.3□□□□□ -0.44
RTN3-201ENST00000338850 ENOX1Q8TC92 643 aaKnown RBP12.3□□□□□ -0.44
RTN3-201ENST00000338850 CLMNQ96JQ2 1002 aa12.3□□□□□ -0.44
RTN3-201ENST00000338850 PYM1Q9BRP8 204 aaKnown RBP12.3□□□□□ -0.44
RTN3-201ENST00000338850 ZNF70Q9UC06 446 aaPredicted RBP12.3□□□□□ -0.44
RTN3-201ENST00000338850 KCNH3Q9ULD8 1083 aa12.3□□□□□ -0.44
RTN3-201ENST00000338850 IQSEC3Q9UPP2 1182 aaPredicted RBP12.3□□□□□ -0.44
RTN3-201ENST00000338850 ERICH2A1L162 156 aa12.29□□□□□ -0.44
RTN3-201ENST00000338850 IFIT3O14879 490 aaKnown RBP12.29□□□□□ -0.44
RTN3-201ENST00000338850 PPP1R12BO60237 982 aaPredicted RBP12.29□□□□□ -0.44
RTN3-201ENST00000338850 MBD4O95243 580 aa12.29□□□□□ -0.44
RTN3-201ENST00000338850 CALM1P0DP23 149 aa12.29□□□□□ -0.44
RTN3-201ENST00000338850 CALM2P0DP24 149 aa12.29□□□□□ -0.44
RTN3-201ENST00000338850 CALM3P0DP25 149 aa12.29□□□□□ -0.44
RTN3-201ENST00000338850 ERCC5P28715 1186 aaPredicted RBP12.29□□□□□ -0.44
RTN3-201ENST00000338850 MDM2Q00987 491 aaPredicted RBP12.29□□□□□ -0.44
RTN3-201ENST00000338850 DMTNQ08495 405 aa12.29□□□□□ -0.44
RTN3-201ENST00000338850 SEMA3FQ13275 785 aa12.29□□□□□ -0.44
RTN3-201ENST00000338850 GNL2Q13823 731 aaKnown RBP12.29□□□□□ -0.44
RTN3-201ENST00000338850 WTAPQ15007 396 aa12.29□□□□□ -0.44
RTN3-201ENST00000338850 CAVIN4Q5BKX8 364 aa12.29□□□□□ -0.44
RTN3-201ENST00000338850 PPP4R3BQ5MIZ7 849 aa12.29□□□□□ -0.44
RTN3-201ENST00000338850 NFXL1Q6ZNB6 911 aa12.29□□□□□ -0.44
RTN3-201ENST00000338850 TMC6Q7Z403 805 aa12.29□□□□□ -0.44
RTN3-201ENST00000338850 FILIP1Q7Z7B0 1213 aa12.29□□□□□ -0.44
RTN3-201ENST00000338850 METTL16Q86W50 562 aaKnown RBP12.29□□□□□ -0.44
RTN3-201ENST00000338850 MICU3Q86XE3 530 aa12.29□□□□□ -0.44
RTN3-201ENST00000338850 SLC10A4Q96EP9 437 aa12.29□□□□□ -0.44
RTN3-201ENST00000338850 PPP1R13BQ96KQ4 1090 aa12.29□□□□□ -0.44
RTN3-201ENST00000338850 TDRD3Q9H7E2 651 aaKnown RBP12.29□□□□□ -0.44
RTN3-201ENST00000338850 RBM28Q9NW13 759 aaKnown RBP12.29□□□□□ -0.44
RTN3-201ENST00000338850 FAM53CQ9NYF3 392 aa12.29□□□□□ -0.44
RTN3-201ENST00000338850 ZSWIM5Q9P217 1185 aa12.29□□□□□ -0.44
RTN3-201ENST00000338850 DDX41Q9UJV9 622 aaKnown RBP12.29□□□□□ -0.44
RTN3-201ENST00000338850 FBXO2Q9UK22 296 aaPredicted RBP12.29□□□□□ -0.44
RTN3-201ENST00000338850 SRPRBQ9Y5M8 271 aaKnown RBP12.29□□□□□ -0.44
RTN3-201ENST00000338850 UNCXA6NJT0 531 aa12.28□□□□□ -0.44
RTN3-201ENST00000338850 ARHGAP6O43182 974 aa12.28□□□□□ -0.44
RTN3-201ENST00000338850 ZSCAN12O43309 604 aa12.28□□□□□ -0.44
RTN3-201ENST00000338850 USP2O75604 605 aaPredicted RBP12.28□□□□□ -0.44
RTN3-201ENST00000338850 SMC2O95347 1197 aa12.28□□□□□ -0.44
RTN3-201ENST00000338850 APPP05067 770 aa12.28□□□□□ -0.44
RTN3-201ENST00000338850 ZNF18P17022 549 aa12.28□□□□□ -0.44
RTN3-201ENST00000338850 XBP1P17861 261 aa12.28□□□□□ -0.44
RTN3-201ENST00000338850 CRKP46108 304 aa12.28□□□□□ -0.44
RTN3-201ENST00000338850 BCAMP50895 628 aa12.28□□□□□ -0.44
RTN3-201ENST00000338850 TBX2Q13207 712 aaPredicted RBP12.28□□□□□ -0.44
RTN3-201ENST00000338850 TNFAIP1Q13829 316 aa12.28□□□□□ -0.44
RTN3-201ENST00000338850 SEC23AQ15436 765 aa12.28□□□□□ -0.44
RTN3-201ENST00000338850 NOM1Q5C9Z4 860 aaKnown RBP12.28□□□□□ -0.44
RTN3-201ENST00000338850 CRACR2BQ8N4Y2 399 aaPredicted RBP12.28□□□□□ -0.44
RTN3-201ENST00000338850 MAGEB6Q8N7X4 407 aa12.28□□□□□ -0.44
RTN3-201ENST00000338850 CNNM3Q8NE01 707 aa12.28□□□□□ -0.44
RTN3-201ENST00000338850 TBC1D22AQ8WUA7 517 aa12.28□□□□□ -0.44
RTN3-201ENST00000338850 ZNF296Q8WUU4 475 aaPredicted RBP12.28□□□□□ -0.44
RTN3-201ENST00000338850 WNK4Q96J92 1243 aa12.28□□□□□ -0.44
RTN3-201ENST00000338850 CFHR5Q9BXR6 569 aa12.28□□□□□ -0.44
RTN3-201ENST00000338850 ZMYND15Q9H091 742 aa12.28□□□□□ -0.44
RTN3-201ENST00000338850 AATFQ9NY61 560 aaKnown RBP eCLIP12.28□□□□□ -0.44
RTN3-201ENST00000338850 MANSC4A6NHS7 340 aaPredicted RBP12.27□□□□□ -0.45
RTN3-201ENST00000338850 USP27XA6NNY8 438 aa12.27□□□□□ -0.45
RTN3-201ENST00000338850 GPR25O00155 361 aa12.27□□□□□ -0.45
RTN3-201ENST00000338850 DDAH1O94760 285 aa12.27□□□□□ -0.45
RTN3-201ENST00000338850 ZBTB48P10074 688 aaPredicted RBP12.27□□□□□ -0.45
RTN3-201ENST00000338850 UBASH3AP57075 661 aa12.27□□□□□ -0.45
RTN3-201ENST00000338850 ETF1P62495 437 aaKnown RBP12.27□□□□□ -0.45
RTN3-201ENST00000338850 HDLBPQ00341 1268 aaKnown RBP12.27□□□□□ -0.45
RTN3-201ENST00000338850 MLLT1Q03111 559 aaPredicted RBP12.27□□□□□ -0.45
RTN3-201ENST00000338850 MORC3Q14149 939 aa12.27□□□□□ -0.45
RTN3-201ENST00000338850 POSTNQ15063 836 aa12.27□□□□□ -0.45
RTN3-201ENST00000338850 CDAN1Q8IWY9 1227 aa12.27□□□□□ -0.45
RTN3-201ENST00000338850 DIS3L2Q8IYB7 885 aaKnown RBP12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms