RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 RAB3IPQ96QF0 476 aaPredicted RBP13.88□□□□□ -0.19
SDC3-201ENST00000336798 USP21Q9UK80 565 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 MKRN3Q13064 507 aaKnown RBP13.88□□□□□ -0.19
SDC3-201ENST00000336798 PAK2Q13177 524 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 POLA2Q14181 598 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 KIF22Q14807 665 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 ATL3Q6DD88 541 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 PPP4R1Q8TF05 950 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 IRAK4Q9NWZ3 460 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 TOP2BQ02880 1626 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 LRRIQ4A6NIV6 560 aa13.87□□□□□ -0.19
SDC3-201ENST00000336798 ARPP19P56211 112 aa13.87□□□□□ -0.19
SDC3-201ENST00000336798 NAA35Q5VZE5 725 aa13.87□□□□□ -0.19
SDC3-201ENST00000336798 ZNF653Q96CK0 615 aa13.87□□□□□ -0.19
SDC3-201ENST00000336798 HDAC11Q96DB2 347 aa13.87□□□□□ -0.19
SDC3-201ENST00000336798 BAIAP2L1Q9UHR4 511 aa13.87□□□□□ -0.19
SDC3-201ENST00000336798 MAD1L1Q9Y6D9 718 aa13.87□□□□□ -0.19
SDC3-201ENST00000336798 E7EWF7 191 aa13.87□□□□□ -0.19
SDC3-201ENST00000336798 SMIM24O75264 130 aa13.87□□□□□ -0.19
SDC3-201ENST00000336798 MYLK4Q86YV6 388 aaPredicted RBP13.87□□□□□ -0.19
SDC3-201ENST00000336798 TTC30BQ8N4P2 665 aa13.87□□□□□ -0.19
SDC3-201ENST00000336798 SPATA17Q96L03 361 aa13.87□□□□□ -0.19
SDC3-201ENST00000336798 GLT8D2Q9H1C3 349 aa13.87□□□□□ -0.19
SDC3-201ENST00000336798 PANK4Q9NVE7 773 aa13.87□□□□□ -0.19
SDC3-201ENST00000336798 RUFY4Q6ZNE9 571 aa13.87□□□□□ -0.19
SDC3-201ENST00000336798 HOOK2Q96ED9 719 aa13.87□□□□□ -0.19
SDC3-201ENST00000336798 PSTPIP2Q9H939 334 aa13.87□□□□□ -0.19
SDC3-201ENST00000336798 PTPN22Q9Y2R2 807 aa13.87□□□□□ -0.19
SDC3-201ENST00000336798 USP17L12C9JPN9 530 aa13.87□□□□□ -0.19
SDC3-201ENST00000336798 USP17L21D6R901 530 aa13.87□□□□□ -0.19
SDC3-201ENST00000336798 TSNAXIP1Q2TAA8 658 aa13.87□□□□□ -0.19
SDC3-201ENST00000336798 DISC1Q9NRI5 854 aa13.87□□□□□ -0.19
SDC3-201ENST00000336798 RGS16O15492 202 aaPredicted RBP13.87□□□□□ -0.19
SDC3-201ENST00000336798 XRCC5P13010 732 aaKnown RBP13.87□□□□□ -0.19
SDC3-201ENST00000336798 CTNNA1P35221 906 aaKnown RBP13.87□□□□□ -0.19
SDC3-201ENST00000336798 ZBTB8OSQ8IWT0 167 aa13.87□□□□□ -0.19
SDC3-201ENST00000336798 OAS2P29728 719 aaKnown RBP13.86□□□□□ -0.19
SDC3-201ENST00000336798 ATP1A2P50993 1020 aa13.86□□□□□ -0.19
SDC3-201ENST00000336798 TTC19Q6DKK2 380 aaPredicted RBP13.86□□□□□ -0.19
SDC3-201ENST00000336798 TMTC1Q8IUR5 882 aa13.86□□□□□ -0.19
SDC3-201ENST00000336798 TRIM35Q9UPQ4 493 aa13.86□□□□□ -0.19
SDC3-201ENST00000336798 KRIT1O00522 736 aa13.86□□□□□ -0.19
SDC3-201ENST00000336798 ZBTB7BO15156 539 aaPredicted RBP13.86□□□□□ -0.19
SDC3-201ENST00000336798 ADCY1Q08828 1119 aa13.86□□□□□ -0.19
SDC3-201ENST00000336798 GNPTABQ3T906 1256 aa13.86□□□□□ -0.19
SDC3-201ENST00000336798 TEKT1Q969V4 418 aa13.86□□□□□ -0.19
SDC3-201ENST00000336798 SLC52A2Q9HAB3 445 aa13.86□□□□□ -0.19
SDC3-201ENST00000336798 STK24Q9Y6E0 443 aa13.86□□□□□ -0.19
SDC3-201ENST00000336798 MAP3K1Q13233 1512 aa13.86□□□□□ -0.19
SDC3-201ENST00000336798 PIK3CAP42336 1068 aa13.86□□□□□ -0.19
SDC3-201ENST00000336798 SPICE1Q8N0Z3 855 aa13.86□□□□□ -0.19
SDC3-201ENST00000336798 PPM1KQ8N3J5 372 aa13.86□□□□□ -0.19
SDC3-201ENST00000336798 PLCB1Q9NQ66 1216 aa13.86□□□□□ -0.19
SDC3-201ENST00000336798 RTEL1Q9NZ71 1219 aa13.86□□□□□ -0.19
SDC3-201ENST00000336798 FRMD3A2A2Y4 597 aa13.86□□□□□ -0.19
SDC3-201ENST00000336798 CYP4A11Q02928 519 aa13.86□□□□□ -0.19
SDC3-201ENST00000336798 ZNF827Q17R98 1081 aa13.86□□□□□ -0.19
SDC3-201ENST00000336798 RNF10Q8N5U6 811 aaKnown RBP13.86□□□□□ -0.19
SDC3-201ENST00000336798 KCNJ18B7U540 433 aa13.86□□□□□ -0.19
SDC3-201ENST00000336798 ECE1P42892 770 aa13.86□□□□□ -0.19
SDC3-201ENST00000336798 POLGP54098 1239 aaPredicted RBP13.86□□□□□ -0.19
SDC3-201ENST00000336798 KCNJ12Q14500 433 aa13.86□□□□□ -0.19
SDC3-201ENST00000336798 AS3MTQ9HBK9 375 aa13.86□□□□□ -0.19
SDC3-201ENST00000336798 SLC39A2Q9NP94 309 aa13.86□□□□□ -0.19
SDC3-201ENST00000336798 STAT1P42224 750 aa13.85□□□□□ -0.19
SDC3-201ENST00000336798 BCAMP50895 628 aa13.85□□□□□ -0.19
SDC3-201ENST00000336798 ARHGAP24Q8N264 748 aa13.85□□□□□ -0.19
SDC3-201ENST00000336798 FIS1Q9Y3D6 152 aa13.85□□□□□ -0.19
SDC3-201ENST00000336798 ALDH1B1P30837 517 aa13.85□□□□□ -0.19
SDC3-201ENST00000336798 PEX19P40855 299 aa13.85□□□□□ -0.19
SDC3-201ENST00000336798 YWHAEP62258 255 aaKnown RBP13.85□□□□□ -0.19
SDC3-201ENST00000336798 PPFIA1Q13136 1202 aa13.85□□□□□ -0.19
SDC3-201ENST00000336798 LLPHQ9BRT6 129 aaKnown RBP13.85□□□□□ -0.19
SDC3-201ENST00000336798 MROH5Q6ZUA9 1318 aa13.85□□□□□ -0.19
SDC3-201ENST00000336798 CLRN2A0PK11 232 aa13.85□□□□□ -0.19
SDC3-201ENST00000336798 POLR2FP61218 127 aaKnown RBP13.85□□□□□ -0.19
SDC3-201ENST00000336798 KBTBD3Q8NAB2 608 aa13.85□□□□□ -0.19
SDC3-201ENST00000336798 NUCKS1Q9H1E3 243 aaKnown RBP13.85□□□□□ -0.19
SDC3-201ENST00000336798 POLR2MP0CAP2 368 aa13.85□□□□□ -0.19
SDC3-201ENST00000336798 PDE6CP51160 858 aa13.85□□□□□ -0.19
SDC3-201ENST00000336798 LLGL1Q15334 1064 aa13.85□□□□□ -0.19
SDC3-201ENST00000336798 PHLDB2Q86SQ0 1253 aa13.85□□□□□ -0.19
SDC3-201ENST00000336798 PDZD8Q8NEN9 1154 aa13.85□□□□□ -0.19
SDC3-201ENST00000336798 A0A1W2PP64 1363 aa13.85□□□□□ -0.19
SDC3-201ENST00000336798 IBTKQ9P2D0 1353 aaPredicted RBP13.85□□□□□ -0.19
SDC3-201ENST00000336798 MORC3Q14149 939 aa13.85□□□□□ -0.19
SDC3-201ENST00000336798 GCKRQ14397 625 aa13.85□□□□□ -0.19
SDC3-201ENST00000336798 MUM1L1Q5H9M0 696 aa13.85□□□□□ -0.19
SDC3-201ENST00000336798 NBPF3Q9H094 633 aa13.85□□□□□ -0.19
SDC3-201ENST00000336798 DDX25Q9UHL0 483 aaKnown RBP13.85□□□□□ -0.19
SDC3-201ENST00000336798 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.85□□□□□ -0.19
SDC3-201ENST00000336798 LAMC3Q9Y6N6 1575 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.84□□□□□ -0.19
SDC3-201ENST00000336798 DCPSQ96C86 337 aaKnown RBP13.84□□□□□ -0.19
SDC3-201ENST00000336798 ADPGKQ9BRR6 497 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 CCDC68Q9H2F9 335 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 C1orf112Q9NSG2 853 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 SLC5A4Q9NY91 659 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 TMEM191BP0C7N4 346 aa13.84□□□□□ -0.19
SDC3-201ENST00000336798 MX2P20592 715 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms