RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 NECTIN1Q15223 517 aa16.45■□□□□ 0.22
LIMS1-201ENST00000332345 CCDC96Q2M329 555 aa16.45■□□□□ 0.22
LIMS1-201ENST00000332345 KCTD1Q719H9 257 aa16.45■□□□□ 0.22
LIMS1-201ENST00000332345 NCAPG2Q86XI2 1143 aa16.45■□□□□ 0.22
LIMS1-201ENST00000332345 SH3TC2Q8TF17 1288 aa16.45■□□□□ 0.22
LIMS1-201ENST00000332345 ERICH2A1L162 156 aa16.44■□□□□ 0.22
LIMS1-201ENST00000332345 SLC27A2O14975 620 aa16.44■□□□□ 0.22
LIMS1-201ENST00000332345 XRCC5P13010 732 aaKnown RBP16.44■□□□□ 0.22
LIMS1-201ENST00000332345 PTPREP23469 700 aa16.44■□□□□ 0.22
LIMS1-201ENST00000332345 RGS2P41220 211 aa16.44■□□□□ 0.22
LIMS1-201ENST00000332345 SART3Q15020 963 aaKnown RBP16.44■□□□□ 0.22
LIMS1-201ENST00000332345 MORN1Q5T089 497 aa16.44■□□□□ 0.22
LIMS1-201ENST00000332345 IFIT1BQ5T764 474 aaKnown RBP16.44■□□□□ 0.22
LIMS1-201ENST00000332345 CREB3L3Q68CJ9 461 aa16.44■□□□□ 0.22
LIMS1-201ENST00000332345 RIOX2Q8IUF8 465 aa16.44■□□□□ 0.22
LIMS1-201ENST00000332345 TRMT44Q8IYL2 757 aaKnown RBP16.44■□□□□ 0.22
LIMS1-201ENST00000332345 ENAHQ8N8S7 591 aaPredicted RBP16.44■□□□□ 0.22
LIMS1-201ENST00000332345 ZNF333Q96JL9 665 aa16.44■□□□□ 0.22
LIMS1-201ENST00000332345 TMEM106CQ9BVX2 250 aa16.44■□□□□ 0.22
LIMS1-201ENST00000332345 SLC38A10Q9HBR0 1119 aa16.44■□□□□ 0.22
LIMS1-201ENST00000332345 COL11A1P12107 1806 aaPredicted RBP16.44■□□□□ 0.22
LIMS1-201ENST00000332345 TNKSO95271 1327 aa16.44■□□□□ 0.22
LIMS1-201ENST00000332345 ATP2A1O14983 1001 aa16.43■□□□□ 0.22
LIMS1-201ENST00000332345 PDHBP11177 359 aa16.43■□□□□ 0.22
LIMS1-201ENST00000332345 CYP2B6P20813 491 aa16.43■□□□□ 0.22
LIMS1-201ENST00000332345 MAP2K5Q13163 448 aa16.43■□□□□ 0.22
LIMS1-201ENST00000332345 CYB5R4Q7L1T6 521 aa16.43■□□□□ 0.22
LIMS1-201ENST00000332345 ABRAQ8N0Z2 381 aa16.43■□□□□ 0.22
LIMS1-201ENST00000332345 PNMA1Q8ND90 353 aa16.43■□□□□ 0.22
LIMS1-201ENST00000332345 REPS2Q8NFH8 660 aa16.43■□□□□ 0.22
LIMS1-201ENST00000332345 USP6NLQ92738 828 aa16.43■□□□□ 0.22
LIMS1-201ENST00000332345 TEX13BQ9BXU2 312 aa16.43■□□□□ 0.22
LIMS1-201ENST00000332345 ZNF214Q9UL59 606 aaPredicted RBP16.43■□□□□ 0.22
LIMS1-201ENST00000332345 HTTP42858 3142 aa16.43■□□□□ 0.22
LIMS1-201ENST00000332345 IFIT3O14879 490 aaKnown RBP16.42■□□□□ 0.22
LIMS1-201ENST00000332345 REC8O95072 547 aa16.42■□□□□ 0.22
LIMS1-201ENST00000332345 FCER1AP12319 257 aa16.42■□□□□ 0.22
LIMS1-201ENST00000332345 ELNP15502 786 aa16.42■□□□□ 0.22
LIMS1-201ENST00000332345 OAZ1P54368 228 aa16.42■□□□□ 0.22
LIMS1-201ENST00000332345 GPATCH4Q5T3I0 446 aaKnown RBP16.42■□□□□ 0.22
LIMS1-201ENST00000332345 CPXCR1Q8N123 301 aa16.42■□□□□ 0.22
LIMS1-201ENST00000332345 GPCPD1Q9NPB8 672 aa16.42■□□□□ 0.22
LIMS1-201ENST00000332345 SLC5A4Q9NY91 659 aa16.42■□□□□ 0.22
LIMS1-201ENST00000332345 TAF6LQ9Y6J9 622 aa16.42■□□□□ 0.22
LIMS1-201ENST00000332345 A0A0G2JMZ2 1700 aa16.42■□□□□ 0.22
LIMS1-201ENST00000332345 ZNFX1Q9P2E3 1918 aaKnown RBP16.41■□□□□ 0.22
LIMS1-201ENST00000332345 SNHG28P0DPA3 235 aa16.41■□□□□ 0.22
LIMS1-201ENST00000332345 ZKSCAN1P17029 563 aaPredicted RBP16.41■□□□□ 0.22
LIMS1-201ENST00000332345 SLC4A3P48751 1232 aa16.41■□□□□ 0.22
LIMS1-201ENST00000332345 ZNF543Q08ER8 600 aa16.41■□□□□ 0.22
LIMS1-201ENST00000332345 GRB14Q14449 540 aa16.41■□□□□ 0.22
LIMS1-201ENST00000332345 SEC23AQ15436 765 aa16.41■□□□□ 0.22
LIMS1-201ENST00000332345 SNRNP48Q6IEG0 339 aaKnown RBP16.41■□□□□ 0.22
LIMS1-201ENST00000332345 BTNL9Q6UXG8 535 aa16.41■□□□□ 0.22
LIMS1-201ENST00000332345 STOX1Q6ZVD7 989 aa16.41■□□□□ 0.22
LIMS1-201ENST00000332345 DPP9Q86TI2 863 aa16.41■□□□□ 0.22
LIMS1-201ENST00000332345 MTA3Q9BTC8 594 aa16.41■□□□□ 0.22
LIMS1-201ENST00000332345 RAVER2Q9HCJ3 691 aaKnown RBP16.41■□□□□ 0.22
LIMS1-201ENST00000332345 PRR12Q9ULL5 1215 aa16.41■□□□□ 0.22
LIMS1-201ENST00000332345 FRMPD2Q68DX3 1309 aaPredicted RBP16.41■□□□□ 0.22
LIMS1-201ENST00000332345 PLXNB2O15031 1838 aa16.4■□□□□ 0.22
LIMS1-201ENST00000332345 HMGCRP04035 888 aa16.4■□□□□ 0.22
LIMS1-201ENST00000332345 ADORA2AP29274 412 aa16.4■□□□□ 0.22
LIMS1-201ENST00000332345 MCM5P33992 734 aa16.4■□□□□ 0.22
LIMS1-201ENST00000332345 KCTD2Q14681 263 aa16.4■□□□□ 0.22
LIMS1-201ENST00000332345 WTAPQ15007 396 aa16.4■□□□□ 0.22
LIMS1-201ENST00000332345 TTBK2Q6IQ55 1244 aa16.4■□□□□ 0.22
LIMS1-201ENST00000332345 TMTC2Q8N394 836 aa16.4■□□□□ 0.22
LIMS1-201ENST00000332345 MMP19Q99542 508 aa16.4■□□□□ 0.22
LIMS1-201ENST00000332345 APBA2Q99767 749 aa16.4■□□□□ 0.22
LIMS1-201ENST00000332345 KIAA0100Q14667 2235 aaKnown RBP16.39■□□□□ 0.22
LIMS1-201ENST00000332345 MYCP01106 439 aaPredicted RBP16.39■□□□□ 0.21
LIMS1-201ENST00000332345 INHAP05111 366 aa16.39■□□□□ 0.21
LIMS1-201ENST00000332345 HOXC6P09630 235 aa16.39■□□□□ 0.21
LIMS1-201ENST00000332345 SLC16A2P36021 539 aa16.39■□□□□ 0.21
LIMS1-201ENST00000332345 SOX10P56693 466 aa16.39■□□□□ 0.21
LIMS1-201ENST00000332345 KRT32Q14532 448 aa16.39■□□□□ 0.21
LIMS1-201ENST00000332345 TSGA10IPQ3SY00 556 aa16.39■□□□□ 0.21
LIMS1-201ENST00000332345 ASPRV1Q53RT3 343 aa16.39■□□□□ 0.21
LIMS1-201ENST00000332345 TMEM67Q5HYA8 995 aa16.39■□□□□ 0.21
LIMS1-201ENST00000332345 SYDE2Q5VT97 1194 aa16.39■□□□□ 0.21
LIMS1-201ENST00000332345 CHST3Q7LGC8 479 aa16.39■□□□□ 0.21
LIMS1-201ENST00000332345 MB21D2Q8IYB1 491 aaPredicted RBP16.39■□□□□ 0.21
LIMS1-201ENST00000332345 FBXO40Q9UH90 709 aa16.39■□□□□ 0.21
LIMS1-201ENST00000332345 EPB41L2O43491 1005 aaKnown RBP16.38■□□□□ 0.21
LIMS1-201ENST00000332345 PARP1P09874 1014 aaKnown RBP16.38■□□□□ 0.21
LIMS1-201ENST00000332345 CCL5P13501 91 aa16.38■□□□□ 0.21
LIMS1-201ENST00000332345 MTFR1Q15390 333 aa16.38■□□□□ 0.21
LIMS1-201ENST00000332345 TKFCQ3LXA3 575 aa16.38■□□□□ 0.21
LIMS1-201ENST00000332345 RASGRP2Q7LDG7 609 aa16.38■□□□□ 0.21
LIMS1-201ENST00000332345 CHST13Q8NET6 341 aa16.38■□□□□ 0.21
LIMS1-201ENST00000332345 IGDCC4Q8TDY8 1250 aa16.38■□□□□ 0.21
LIMS1-201ENST00000332345 TMEM87BQ96K49 555 aa16.38■□□□□ 0.21
LIMS1-201ENST00000332345 RNF208Q9H0X6 261 aa16.38■□□□□ 0.21
LIMS1-201ENST00000332345 PNMA2Q9UL42 364 aa16.38■□□□□ 0.21
LIMS1-201ENST00000332345 RIPK3Q9Y572 518 aa16.38■□□□□ 0.21
LIMS1-201ENST00000332345 PRC1O43663 620 aa16.37■□□□□ 0.21
LIMS1-201ENST00000332345 GOLGA8HP0CJ92 632 aa16.37■□□□□ 0.21
LIMS1-201ENST00000332345 RGS19P49795 217 aa16.37■□□□□ 0.21
LIMS1-201ENST00000332345 ANTXR2P58335 489 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms