RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 MYO1BO43795 1136 aa21.13■□□□□ 0.97
USP39-201ENST00000323701 LETM1O95202 739 aaPredicted RBP21.13■□□□□ 0.97
USP39-201ENST00000323701 RPS12P25398 132 aaKnown RBP21.13■□□□□ 0.97
USP39-201ENST00000323701 MAP3K11Q16584 847 aa21.13■□□□□ 0.97
USP39-201ENST00000323701 ERCC4Q92889 916 aaPredicted RBP21.13■□□□□ 0.97
USP39-201ENST00000323701 NUP88Q99567 741 aaPredicted RBP21.13■□□□□ 0.97
USP39-201ENST00000323701 BRMS1Q9HCU9 246 aa21.13■□□□□ 0.97
USP39-201ENST00000323701 PPP1R11O60927 126 aaPredicted RBP21.13■□□□□ 0.97
USP39-201ENST00000323701 PFKFB1P16118 471 aa21.13■□□□□ 0.97
USP39-201ENST00000323701 CMA1P23946 247 aa21.13■□□□□ 0.97
USP39-201ENST00000323701 RASA3Q14644 834 aa21.13■□□□□ 0.97
USP39-201ENST00000323701 CCDC96Q2M329 555 aa21.13■□□□□ 0.97
USP39-201ENST00000323701 FBXO2Q9UK22 296 aaPredicted RBP21.13■□□□□ 0.97
USP39-201ENST00000323701 ECE1P42892 770 aa21.12■□□□□ 0.97
USP39-201ENST00000323701 COA7Q96BR5 231 aa21.12■□□□□ 0.97
USP39-201ENST00000323701 PCDHA6Q9UN73 950 aa21.12■□□□□ 0.97
USP39-201ENST00000323701 PCDHA8Q9Y5H6 950 aa21.12■□□□□ 0.97
USP39-201ENST00000323701 USP17L10C9JJH3 530 aa21.12■□□□□ 0.97
USP39-201ENST00000323701 ZNF174Q15697 407 aa21.12■□□□□ 0.97
USP39-201ENST00000323701 SLFN13Q68D06 897 aa21.12■□□□□ 0.97
USP39-201ENST00000323701 DPF2Q92785 391 aa21.12■□□□□ 0.97
USP39-201ENST00000323701 TEPSINQ96N21 525 aa21.12■□□□□ 0.97
USP39-201ENST00000323701 TRIM75PA6NK02 468 aa21.11■□□□□ 0.97
USP39-201ENST00000323701 F5H6K3 240 aa21.11■□□□□ 0.97
USP39-201ENST00000323701 CALML3P27482 149 aa21.11■□□□□ 0.97
USP39-201ENST00000323701 NAPAP54920 295 aa21.11■□□□□ 0.97
USP39-201ENST00000323701 KLRC3Q07444 240 aa21.11■□□□□ 0.97
USP39-201ENST00000323701 KIAA1755Q5JYT7 1200 aa21.11■□□□□ 0.97
USP39-201ENST00000323701 ACER1Q8TDN7 264 aa21.11■□□□□ 0.97
USP39-201ENST00000323701 ZMYND12Q9H0C1 365 aa21.11■□□□□ 0.97
USP39-201ENST00000323701 A0A087WWV3 80 aa21.1■□□□□ 0.97
USP39-201ENST00000323701 CCDC84Q86UT8 332 aaPredicted RBP21.1■□□□□ 0.97
USP39-201ENST00000323701 SEC63Q9UGP8 760 aaKnown RBP21.1■□□□□ 0.97
USP39-201ENST00000323701 NDUFB10O96000 172 aa21.1■□□□□ 0.97
USP39-201ENST00000323701 PTPREP23469 700 aa21.1■□□□□ 0.97
USP39-201ENST00000323701 SLC1A4P43007 532 aa21.1■□□□□ 0.97
USP39-201ENST00000323701 TTC38Q5R3I4 469 aa21.1■□□□□ 0.97
USP39-201ENST00000323701 GPATCH4Q5T3I0 446 aaKnown RBP21.1■□□□□ 0.97
USP39-201ENST00000323701 RESP18Q5W5W9 173 aa21.1■□□□□ 0.97
USP39-201ENST00000323701 KRI1Q8N9T8 703 aaKnown RBP21.1■□□□□ 0.97
USP39-201ENST00000323701 HPSEQ9Y251 543 aa21.1■□□□□ 0.97
USP39-201ENST00000323701 SMCO2A6NFE2 343 aa21.09■□□□□ 0.97
USP39-201ENST00000323701 USP49Q70CQ1 688 aa21.09■□□□□ 0.97
USP39-201ENST00000323701 SPICE1Q8N0Z3 855 aa21.09■□□□□ 0.97
USP39-201ENST00000323701 JMYQ8N9B5 988 aa21.09■□□□□ 0.97
USP39-201ENST00000323701 DAGLBQ8NCG7 672 aa21.09■□□□□ 0.97
USP39-201ENST00000323701 HACL1Q9UJ83 578 aa21.09■□□□□ 0.97
USP39-201ENST00000323701 ZBTB21Q9ULJ3 1066 aa21.09■□□□□ 0.97
USP39-201ENST00000323701 KINO60870 393 aaKnown RBP21.09■□□□□ 0.97
USP39-201ENST00000323701 CUTAO60888 179 aa21.09■□□□□ 0.97
USP39-201ENST00000323701 ZNF202O95125 648 aa21.09■□□□□ 0.97
USP39-201ENST00000323701 CCDC148Q8NFR7 591 aa21.09■□□□□ 0.97
USP39-201ENST00000323701 SYT17Q9BSW7 474 aa21.09■□□□□ 0.97
USP39-201ENST00000323701 TBC1D12O60347 775 aa21.08■□□□□ 0.97
USP39-201ENST00000323701 TYRO3Q06418 890 aa21.08■□□□□ 0.97
USP39-201ENST00000323701 MTMR8Q96EF0 704 aa21.08■□□□□ 0.97
USP39-201ENST00000323701 GLIS2Q9BZE0 524 aaPredicted RBP21.08■□□□□ 0.97
USP39-201ENST00000323701 SNAP25P60880 206 aa21.07■□□□□ 0.96
USP39-201ENST00000323701 MAP3K10Q02779 954 aa21.07■□□□□ 0.96
USP39-201ENST00000323701 KIF4BQ2VIQ3 1234 aa21.07■□□□□ 0.96
USP39-201ENST00000323701 PPP4R3BQ5MIZ7 849 aa21.07■□□□□ 0.96
USP39-201ENST00000323701 GMCL1P1Q8NEA9 526 aa21.07■□□□□ 0.96
USP39-201ENST00000323701 TRPM4Q8TD43 1214 aa21.07■□□□□ 0.96
USP39-201ENST00000323701 SBF1O95248 1867 aa21.07■□□□□ 0.96
USP39-201ENST00000323701 YBX3P16989 372 aaKnown RBP eCLIP21.07■□□□□ 0.966e-7■■□□□ 12.2
USP39-201ENST00000323701 LMNB1P20700 586 aa21.07■□□□□ 0.96
USP39-201ENST00000323701 MCM7P33993 719 aa21.07■□□□□ 0.96
USP39-201ENST00000323701 PTGDRQ13258 359 aa21.07■□□□□ 0.96
USP39-201ENST00000323701 INF2Q27J81 1249 aa21.07■□□□□ 0.96
USP39-201ENST00000323701 DCAF4Q8WV16 495 aa21.07■□□□□ 0.96
USP39-201ENST00000323701 CSRNP2Q9H175 543 aa21.07■□□□□ 0.96
USP39-201ENST00000323701 SRPRBQ9Y5M8 271 aaKnown RBP21.07■□□□□ 0.96
USP39-201ENST00000323701 PNMA6FA0A0J9YX94 578 aa21.06■□□□□ 0.96
USP39-201ENST00000323701 FAM237AA0A1B0GTK4 181 aa21.06■□□□□ 0.96
USP39-201ENST00000323701 PHF20L1A8MW92 1017 aa21.06■□□□□ 0.96
USP39-201ENST00000323701 CAP2P40123 477 aa21.06■□□□□ 0.96
USP39-201ENST00000323701 TMEM260Q9NX78 707 aa21.06■□□□□ 0.96
USP39-201ENST00000323701 NOL7Q9UMY1 257 aaKnown RBP21.06■□□□□ 0.96
USP39-201ENST00000323701 IL17AQ16552 155 aa21.06■□□□□ 0.96
USP39-201ENST00000323701 PRAMEF18Q5VWM3 479 aa21.06■□□□□ 0.96
USP39-201ENST00000323701 BIN2Q9UBW5 565 aaPredicted RBP21.06■□□□□ 0.96
USP39-201ENST00000323701 CCDC192P0DO97 292 aa21.05■□□□□ 0.96
USP39-201ENST00000323701 GALNT17Q6IS24 598 aa21.05■□□□□ 0.96
USP39-201ENST00000323701 ILDR2Q71H61 639 aa21.05■□□□□ 0.96
USP39-201ENST00000323701 DEFB129Q9H1M3 183 aa21.05■□□□□ 0.96
USP39-201ENST00000323701 CCDC194A0A1B0GVG4 234 aa21.04■□□□□ 0.96
USP39-201ENST00000323701 ZBTB5O15062 677 aa21.04■□□□□ 0.96
USP39-201ENST00000323701 TAL1P17542 331 aaPredicted RBP21.04■□□□□ 0.96
USP39-201ENST00000323701 EPS15P42566 896 aa21.04■□□□□ 0.96
USP39-201ENST00000323701 SYKP43405 635 aa21.04■□□□□ 0.96
USP39-201ENST00000323701 C4orf32Q8N8J7 132 aa21.04■□□□□ 0.96
USP39-201ENST00000323701 GMCL1Q96IK5 515 aa21.04■□□□□ 0.96
USP39-201ENST00000323701 CEP131Q9UPN4 1083 aa21.04■□□□□ 0.96
USP39-201ENST00000323701 DICER1Q9UPY3 1922 aaKnown RBP21.04■□□□□ 0.96
USP39-201ENST00000323701 TRAPPC10P48553 1259 aa21.04■□□□□ 0.96
USP39-201ENST00000323701 TNNI2P48788 182 aa21.04■□□□□ 0.96
USP39-201ENST00000323701 HIRAP54198 1017 aaPredicted RBP21.04■□□□□ 0.96
USP39-201ENST00000323701 ATP2C1P98194 919 aaPredicted RBP21.04■□□□□ 0.96
USP39-201ENST00000323701 QRICH1Q2TAL8 776 aa21.04■□□□□ 0.96
USP39-201ENST00000323701 NBPF12Q5TAG4 269 aaPredicted RBP21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms