RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 OR52Z1P0C646 297 aa16.4■□□□□ 0.22
TCOF1-201ENST00000323668 TCP1P17987 556 aaKnown RBP16.4■□□□□ 0.22
TCOF1-201ENST00000323668 CDC25AP30304 524 aa16.4■□□□□ 0.22
TCOF1-201ENST00000323668 PAK2Q13177 524 aa16.4■□□□□ 0.22
TCOF1-201ENST00000323668 METTL16Q86W50 562 aaKnown RBP16.4■□□□□ 0.22
TCOF1-201ENST00000323668 NAP1L4Q99733 375 aaKnown RBP16.4■□□□□ 0.22
TCOF1-201ENST00000323668 NUCKS1Q9H1E3 243 aaKnown RBP16.4■□□□□ 0.22
TCOF1-201ENST00000323668 SPDYE3A6NKU9 549 aa16.4■□□□□ 0.22
TCOF1-201ENST00000323668 HS2ST1Q7LGA3 356 aa16.4■□□□□ 0.22
TCOF1-201ENST00000323668 MAPKAPK5Q8IW41 473 aa16.4■□□□□ 0.22
TCOF1-201ENST00000323668 RABEP2Q9H5N1 569 aa16.4■□□□□ 0.22
TCOF1-201ENST00000323668 TUBE1Q9UJT0 475 aa16.4■□□□□ 0.22
TCOF1-201ENST00000323668 ERVV-1B6SEH8 477 aa16.39■□□□□ 0.21
TCOF1-201ENST00000323668 FOXN1O15353 648 aa16.39■□□□□ 0.21
TCOF1-201ENST00000323668 ACTN2P35609 894 aa16.39■□□□□ 0.21
TCOF1-201ENST00000323668 KRT31Q15323 416 aa16.39■□□□□ 0.21
TCOF1-201ENST00000323668 HLFQ16534 295 aa16.39■□□□□ 0.21
TCOF1-201ENST00000323668 DCAF17Q5H9S7 520 aaPredicted RBP16.39■□□□□ 0.21
TCOF1-201ENST00000323668 CCDC121Q6ZUS5 278 aa16.39■□□□□ 0.21
TCOF1-201ENST00000323668 TGFBRAP1Q8WUH2 860 aa16.39■□□□□ 0.21
TCOF1-201ENST00000323668 CTNNBL1Q8WYA6 563 aaPredicted RBP16.39■□□□□ 0.21
TCOF1-201ENST00000323668 PIGBQ92521 554 aa16.39■□□□□ 0.21
TCOF1-201ENST00000323668 TECP42680 631 aa16.39■□□□□ 0.21
TCOF1-201ENST00000323668 ST5P78524 1137 aa16.39■□□□□ 0.21
TCOF1-201ENST00000323668 DYNLL1P63167 89 aaKnown RBP16.39■□□□□ 0.21
TCOF1-201ENST00000323668 CERS3Q8IU89 383 aa16.39■□□□□ 0.21
TCOF1-201ENST00000323668 HYOU1Q9Y4L1 999 aa16.39■□□□□ 0.21
TCOF1-201ENST00000323668 B4DLN1 442 aa16.39■□□□□ 0.21
TCOF1-201ENST00000323668 KLRF2D3W0D1 207 aa16.39■□□□□ 0.21
TCOF1-201ENST00000323668 NDUFA10O95299 355 aa16.39■□□□□ 0.21
TCOF1-201ENST00000323668 ADCY7P51828 1080 aa16.39■□□□□ 0.21
TCOF1-201ENST00000323668 HNRNPH2P55795 449 aaKnown RBP16.39■□□□□ 0.21
TCOF1-201ENST00000323668 KLHL30Q0D2K2 578 aa16.39■□□□□ 0.21
TCOF1-201ENST00000323668 SFMBT2Q5VUG0 894 aa16.39■□□□□ 0.21
TCOF1-201ENST00000323668 FAN1Q9Y2M0 1017 aa16.39■□□□□ 0.21
TCOF1-201ENST00000323668 A0A0G2JLW4 131 aa16.38■□□□□ 0.21
TCOF1-201ENST00000323668 RETREG2Q8NC44 543 aa16.38■□□□□ 0.21
TCOF1-201ENST00000323668 DHTKD1Q96HY7 919 aaPredicted RBP16.38■□□□□ 0.21
TCOF1-201ENST00000323668 MTA3Q9BTC8 594 aa16.38■□□□□ 0.21
TCOF1-201ENST00000323668 RASAL2Q9UJF2 1139 aa16.38■□□□□ 0.21
TCOF1-201ENST00000323668 TADA3O75528 432 aa16.38■□□□□ 0.21
TCOF1-201ENST00000323668 ASIC2Q16515 512 aa16.38■□□□□ 0.21
TCOF1-201ENST00000323668 SNAP23O00161 211 aa16.38■□□□□ 0.21
TCOF1-201ENST00000323668 KRT13P13646 458 aa16.38■□□□□ 0.21
TCOF1-201ENST00000323668 CPLX4Q7Z7G2 160 aa16.38■□□□□ 0.21
TCOF1-201ENST00000323668 NEK8Q86SG6 692 aa16.38■□□□□ 0.21
TCOF1-201ENST00000323668 GPATCH11Q8N954 259 aa16.38■□□□□ 0.21
TCOF1-201ENST00000323668 CCDC26Q8TAB7 109 aa16.38■□□□□ 0.21
TCOF1-201ENST00000323668 PLVAPQ9BX97 442 aa16.38■□□□□ 0.21
TCOF1-201ENST00000323668 PRR29P0C7W0 189 aa16.38■□□□□ 0.21
TCOF1-201ENST00000323668 CASP1P29466 404 aa16.38■□□□□ 0.21
TCOF1-201ENST00000323668 TRAF1Q13077 416 aa16.38■□□□□ 0.21
TCOF1-201ENST00000323668 CUEDC2Q9H467 287 aa16.38■□□□□ 0.21
TCOF1-201ENST00000323668 FAM204AQ9H8W3 233 aa16.38■□□□□ 0.21
TCOF1-201ENST00000323668 ADGRG1Q9Y653 693 aa16.38■□□□□ 0.21
TCOF1-201ENST00000323668 INPP5BP32019 993 aa16.37■□□□□ 0.21
TCOF1-201ENST00000323668 HPDP32754 393 aaPredicted RBP16.37■□□□□ 0.21
TCOF1-201ENST00000323668 TRMT1LQ7Z2T5 733 aaKnown RBP16.37■□□□□ 0.21
TCOF1-201ENST00000323668 RASGRP4Q8TDF6 673 aa16.37■□□□□ 0.21
TCOF1-201ENST00000323668 OXER1Q8TDS5 423 aa16.37■□□□□ 0.21
TCOF1-201ENST00000323668 CNOT6LQ96LI5 555 aaKnown RBP16.37■□□□□ 0.21
TCOF1-201ENST00000323668 EPC1Q9H2F5 836 aa16.37■□□□□ 0.21
TCOF1-201ENST00000323668 ABCB6Q9NP58 842 aa16.37■□□□□ 0.21
TCOF1-201ENST00000323668 MAGEF1Q9HAY2 307 aa16.37■□□□□ 0.21
TCOF1-201ENST00000323668 SLC39A2Q9NP94 309 aa16.37■□□□□ 0.21
TCOF1-201ENST00000323668 BIN2Q9UBW5 565 aaPredicted RBP16.37■□□□□ 0.21
TCOF1-201ENST00000323668 CYP2D7A0A087X1C5 515 aa16.37■□□□□ 0.21
TCOF1-201ENST00000323668 GNPATO15228 680 aa16.37■□□□□ 0.21
TCOF1-201ENST00000323668 FAM13AO94988 1023 aa16.37■□□□□ 0.21
TCOF1-201ENST00000323668 EIF6P56537 245 aaKnown RBP16.37■□□□□ 0.21
TCOF1-201ENST00000323668 ANTXR2P58335 489 aa16.37■□□□□ 0.21
TCOF1-201ENST00000323668 CASP8Q14790 479 aa16.37■□□□□ 0.21
TCOF1-201ENST00000323668 CCDC24Q8N4L8 307 aa16.37■□□□□ 0.21
TCOF1-201ENST00000323668 IPO4Q8TEX9 1081 aaKnown RBP16.37■□□□□ 0.21
TCOF1-201ENST00000323668 UBLCP1Q8WVY7 318 aaPredicted RBP16.37■□□□□ 0.21
TCOF1-201ENST00000323668 WDR24Q96S15 920 aa16.37■□□□□ 0.21
TCOF1-201ENST00000323668 ADAM21Q9UKJ8 722 aa16.37■□□□□ 0.21
TCOF1-201ENST00000323668 TLDC2A0PJX2 215 aa16.36■□□□□ 0.21
TCOF1-201ENST00000323668 TEX33O43247 280 aa16.36■□□□□ 0.21
TCOF1-201ENST00000323668 RCAN1P53805 252 aa16.36■□□□□ 0.21
TCOF1-201ENST00000323668 TMEM132AQ24JP5 1023 aa16.36■□□□□ 0.21
TCOF1-201ENST00000323668 LRRC45Q96CN5 670 aa16.36■□□□□ 0.21
TCOF1-201ENST00000323668 EYA3Q99504 573 aa16.36■□□□□ 0.21
TCOF1-201ENST00000323668 ZC3H12CQ9C0D7 883 aaKnown RBP16.36■□□□□ 0.21
TCOF1-201ENST00000323668 PCDHA4Q9UN74 947 aa16.36■□□□□ 0.21
TCOF1-201ENST00000323668 TCP11X2Q5H9J9 407 aa16.36■□□□□ 0.21
TCOF1-201ENST00000323668 NELFCDQ8IXH7 590 aa16.36■□□□□ 0.21
TCOF1-201ENST00000323668 RIPOR2Q9Y4F9 1068 aa16.36■□□□□ 0.21
TCOF1-201ENST00000323668 LAD1O00515 517 aa16.36■□□□□ 0.21
TCOF1-201ENST00000323668 CEP104O60308 925 aa16.36■□□□□ 0.21
TCOF1-201ENST00000323668 PLEKHA8P1O95397 391 aa16.36■□□□□ 0.21
TCOF1-201ENST00000323668 MYL1P05976 194 aa16.36■□□□□ 0.21
TCOF1-201ENST00000323668 RPS6KA1Q15418 735 aa16.36■□□□□ 0.21
TCOF1-201ENST00000323668 KLHL7Q8IXQ5 586 aa16.36■□□□□ 0.21
TCOF1-201ENST00000323668 ZCCHC17Q9NP64 241 aaKnown RBP16.36■□□□□ 0.21
TCOF1-201ENST00000323668 TBC1D7Q9P0N9 293 aa16.36■□□□□ 0.21
TCOF1-201ENST00000323668 CPDO75976 1380 aa16.36■□□□□ 0.21
TCOF1-201ENST00000323668 GBP2P32456 591 aaPredicted RBP16.36■□□□□ 0.21
TCOF1-201ENST00000323668 ARL6IP4Q66PJ3 421 aaKnown RBP16.36■□□□□ 0.21
TCOF1-201ENST00000323668 P2RX5Q93086 422 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms