RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 STAMBPL1Q96FJ0 436 aa7.42□□□□□ -1.22
ZNF540-201ENST00000316433 HDAC6Q9UBN7 1215 aa7.42□□□□□ -1.22
ZNF540-201ENST00000316433 DBNLQ9UJU6 430 aaKnown RBP7.42□□□□□ -1.22
ZNF540-201ENST00000316433 ZNF510Q9Y2H8 683 aa7.42□□□□□ -1.22
ZNF540-201ENST00000316433 NRAPQ86VF7 1730 aa7.42□□□□□ -1.22
ZNF540-201ENST00000316433 VPS37CA5D8V6 355 aaPredicted RBP7.41□□□□□ -1.22
ZNF540-201ENST00000316433 ERVV-2B6SEH9 535 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 IPO5O00410 1097 aaKnown RBP7.41□□□□□ -1.22
ZNF540-201ENST00000316433 PHKG2P15735 406 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 VCAM1P19320 739 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 RPL13P26373 211 aaKnown RBP7.41□□□□□ -1.22
ZNF540-201ENST00000316433 GGCXP38435 758 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 TEFQ10587 303 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 TMED1Q13445 227 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 STIM1Q13586 685 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 WDR93Q6P2C0 686 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 ZNF530Q6P9A1 599 aaPredicted RBP7.41□□□□□ -1.22
ZNF540-201ENST00000316433 ZNF790Q6PG37 636 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 ABTB2Q8N961 1025 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 SMCR8Q8TEV9 937 aaPredicted RBP7.41□□□□□ -1.22
ZNF540-201ENST00000316433 SH3GL2Q99962 352 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 IL1RAPL2Q9NP60 686 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 INCENPQ9NQS7 918 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 KIAA1468Q9P260 1216 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 GGA2Q9UJY4 613 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 PDS5AQ29RF7 1337 aaKnown RBP7.41□□□□□ -1.22
ZNF540-201ENST00000316433 MYH6P13533 1939 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 CYP21A2P08686 494 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 SNRPA1P09661 255 aaKnown RBP7.41□□□□□ -1.22
ZNF540-201ENST00000316433 CDC25CP30307 473 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 CTCFP49711 727 aaPredicted RBP7.41□□□□□ -1.22
ZNF540-201ENST00000316433 TSNAXIP1Q2TAA8 658 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 C1orf141Q5JVX7 400 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 PPP1R15BQ5SWA1 713 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 ATG9AQ7Z3C6 839 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 FAM81BQ96LP2 452 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 HAUS2Q9NVX0 235 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 IFNKQ9P0W0 207 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 SYNPO2Q9UMS6 1093 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 F8VZ95 297 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 ENOX2Q16206 610 aaKnown RBP7.41□□□□□ -1.22
ZNF540-201ENST00000316433 CCDC38Q502W7 563 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 BRF1Q92994 677 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 TEKT1Q969V4 418 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 TBC1D31Q96DN5 1066 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 CCDC51Q96ER9 411 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 RMDN2Q96LZ7 410 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 ZNF570Q96NI8 536 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 HSD3B7Q9H2F3 369 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 ZFATQ9P243 1243 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 CDC23Q9UJX2 597 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 SPG7Q9UQ90 795 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 ATP8B3O60423 1300 aa7.41□□□□□ -1.22
ZNF540-201ENST00000316433 ATP6V1G2O95670 118 aa7.4□□□□□ -1.22
ZNF540-201ENST00000316433 CSF1RP07333 972 aa7.4□□□□□ -1.22
ZNF540-201ENST00000316433 PCP11498 1178 aaKnown RBP7.4□□□□□ -1.22
ZNF540-201ENST00000316433 PDIA3P30101 505 aaKnown RBP7.4□□□□□ -1.22
ZNF540-201ENST00000316433 SARSP49591 514 aaKnown RBP7.4□□□□□ -1.22
ZNF540-201ENST00000316433 INHBCP55103 352 aa7.4□□□□□ -1.22
ZNF540-201ENST00000316433 IFT88Q13099 833 aa7.4□□□□□ -1.22
ZNF540-201ENST00000316433 SLC39A14Q15043 492 aa7.4□□□□□ -1.22
ZNF540-201ENST00000316433 FOCADQ5VW36 1801 aa7.4□□□□□ -1.22
ZNF540-201ENST00000316433 NAA35Q5VZE5 725 aa7.4□□□□□ -1.22
ZNF540-201ENST00000316433 RESP18Q5W5W9 173 aa7.4□□□□□ -1.22
ZNF540-201ENST00000316433 NUGGCQ68CJ6 796 aa7.4□□□□□ -1.22
ZNF540-201ENST00000316433 C16orf87Q6PH81 154 aa7.4□□□□□ -1.22
ZNF540-201ENST00000316433 CCDC73Q6ZRK6 1079 aa7.4□□□□□ -1.22
ZNF540-201ENST00000316433 CCDC80Q76M96 950 aa7.4□□□□□ -1.22
ZNF540-201ENST00000316433 TMEM110Q86TL2 294 aa7.4□□□□□ -1.22
ZNF540-201ENST00000316433 TMEM139Q8IV31 216 aa7.4□□□□□ -1.22
ZNF540-201ENST00000316433 COG1Q8WTW3 980 aa7.4□□□□□ -1.22
ZNF540-201ENST00000316433 KCNN1Q92952 543 aa7.4□□□□□ -1.22
ZNF540-201ENST00000316433 FAM227BQ96M60 508 aa7.4□□□□□ -1.22
ZNF540-201ENST00000316433 ISCA1Q9BUE6 129 aa7.4□□□□□ -1.22
ZNF540-201ENST00000316433 NOD2Q9HC29 1040 aa7.4□□□□□ -1.22
ZNF540-201ENST00000316433 C9orf78Q9NZ63 289 aaPredicted RBP7.4□□□□□ -1.22
ZNF540-201ENST00000316433 PHF24Q9UPV7 400 aa7.4□□□□□ -1.22
ZNF540-201ENST00000316433 COL1A1P02452 1464 aaPredicted RBP7.4□□□□□ -1.23
ZNF540-201ENST00000316433 ARHGAP6O43182 974 aa7.4□□□□□ -1.23
ZNF540-201ENST00000316433 ZNF18P17022 549 aa7.4□□□□□ -1.23
ZNF540-201ENST00000316433 DESP17661 470 aa7.4□□□□□ -1.23
ZNF540-201ENST00000316433 SKOR1P84550 965 aa7.4□□□□□ -1.23
ZNF540-201ENST00000316433 SLC7A5Q01650 507 aa7.4□□□□□ -1.23
ZNF540-201ENST00000316433 PABPC4Q13310 644 aaKnown RBP eCLIP7.4□□□□□ -1.23
ZNF540-201ENST00000316433 DYNC1I2Q13409 638 aaKnown RBP7.4□□□□□ -1.23
ZNF540-201ENST00000316433 DPY19L2Q6NUT2 758 aa7.4□□□□□ -1.23
ZNF540-201ENST00000316433 CRELD2Q6UXH1 353 aaPredicted RBP7.4□□□□□ -1.23
ZNF540-201ENST00000316433 ZNF589Q86UQ0 364 aaPredicted RBP7.4□□□□□ -1.23
ZNF540-201ENST00000316433 SLC35B4Q969S0 331 aa7.4□□□□□ -1.23
ZNF540-201ENST00000316433 ZWILCHQ9H900 591 aa7.4□□□□□ -1.23
ZNF540-201ENST00000316433 MTMR7Q9Y216 660 aa7.4□□□□□ -1.23
ZNF540-201ENST00000316433 NHSQ6T4R5 1651 aa7.39□□□□□ -1.23
ZNF540-201ENST00000316433 SYNRGQ9UMZ2 1314 aa7.39□□□□□ -1.23
ZNF540-201ENST00000316433 AGPSO00116 658 aa7.39□□□□□ -1.23
ZNF540-201ENST00000316433 RNF113AO15541 343 aaKnown RBP7.39□□□□□ -1.23
ZNF540-201ENST00000316433 LUC7L3O95232 432 aaKnown RBP7.39□□□□□ -1.23
ZNF540-201ENST00000316433 ANP32DO95626 131 aa7.39□□□□□ -1.23
ZNF540-201ENST00000316433 LIFRP42702 1097 aa7.39□□□□□ -1.23
ZNF540-201ENST00000316433 TSHZ3Q63HK5 1081 aa7.39□□□□□ -1.23
ZNF540-201ENST00000316433 CCDC121Q6ZUS5 278 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms