RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 DPP9Q86TI2 863 aa19.29■□□□□ 0.68
LSM1-201ENST00000311351 PRPF38AQ8NAV1 312 aaKnown RBP19.29■□□□□ 0.68
LSM1-201ENST00000311351 DIS3LQ8TF46 1054 aaKnown RBP19.29■□□□□ 0.68
LSM1-201ENST00000311351 MTMR7Q9Y216 660 aa19.29■□□□□ 0.68
LSM1-201ENST00000311351 STRNO43815 780 aa19.28■□□□□ 0.68
LSM1-201ENST00000311351 MCCP23508 829 aa19.28■□□□□ 0.68
LSM1-201ENST00000311351 AKNAD1Q5T1N1 836 aa19.28■□□□□ 0.68
LSM1-201ENST00000311351 SNRNP48Q6IEG0 339 aaKnown RBP19.28■□□□□ 0.68
LSM1-201ENST00000311351 STAG1Q8WVM7 1258 aa19.28■□□□□ 0.68
LSM1-201ENST00000311351 GMCL1Q96IK5 515 aa19.28■□□□□ 0.68
LSM1-201ENST00000311351 FEM1BQ9UK73 627 aa19.28■□□□□ 0.68
LSM1-201ENST00000311351 TMEM232C9JQI7 657 aa19.27■□□□□ 0.68
LSM1-201ENST00000311351 FCER1AP12319 257 aa19.27■□□□□ 0.68
LSM1-201ENST00000311351 SLC4A3P48751 1232 aa19.27■□□□□ 0.68
LSM1-201ENST00000311351 PPP4R3BQ5MIZ7 849 aa19.27■□□□□ 0.68
LSM1-201ENST00000311351 ABRAQ8N0Z2 381 aa19.27■□□□□ 0.68
LSM1-201ENST00000311351 CPXCR1Q8N123 301 aa19.27■□□□□ 0.68
LSM1-201ENST00000311351 MMP19Q99542 508 aa19.27■□□□□ 0.68
LSM1-201ENST00000311351 TEX13BQ9BXU2 312 aa19.27■□□□□ 0.68
LSM1-201ENST00000311351 RAVER2Q9HCJ3 691 aaKnown RBP19.27■□□□□ 0.68
LSM1-201ENST00000311351 RIPK3Q9Y572 518 aa19.27■□□□□ 0.68
LSM1-201ENST00000311351 IGHA2P01877 340 aa19.26■□□□□ 0.67
LSM1-201ENST00000311351 PGK2P07205 417 aa19.26■□□□□ 0.67
LSM1-201ENST00000311351 SLC1A4P43007 532 aa19.26■□□□□ 0.67
LSM1-201ENST00000311351 NOVP48745 357 aa19.26■□□□□ 0.67
LSM1-201ENST00000311351 MFSD6Q6ZSS7 791 aa19.26■□□□□ 0.67
LSM1-201ENST00000311351 KCTD1Q719H9 257 aa19.26■□□□□ 0.67
LSM1-201ENST00000311351 TRPV1Q8NER1 839 aa19.26■□□□□ 0.67
LSM1-201ENST00000311351 PAWRQ96IZ0 340 aaKnown RBP19.26■□□□□ 0.67
LSM1-201ENST00000311351 DSCC1Q9BVC3 393 aa19.26■□□□□ 0.67
LSM1-201ENST00000311351 SLC38A10Q9HBR0 1119 aa19.26■□□□□ 0.67
LSM1-201ENST00000311351 ZNF213O14771 459 aa19.25■□□□□ 0.67
LSM1-201ENST00000311351 ZBED4O75132 1171 aa19.25■□□□□ 0.67
LSM1-201ENST00000311351 COPB2P35606 906 aa19.25■□□□□ 0.67
LSM1-201ENST00000311351 MNX1P50219 401 aaPredicted RBP19.25■□□□□ 0.67
LSM1-201ENST00000311351 STAT2P52630 851 aa19.25■□□□□ 0.67
LSM1-201ENST00000311351 IKQ13123 557 aaPredicted RBP19.25■□□□□ 0.67
LSM1-201ENST00000311351 KCTD2Q14681 263 aa19.25■□□□□ 0.67
LSM1-201ENST00000311351 OLFML2BQ68BL8 750 aa19.25■□□□□ 0.67
LSM1-201ENST00000311351 RNF41Q9H4P4 317 aaPredicted RBP19.25■□□□□ 0.67
LSM1-201ENST00000311351 OGDHLQ9ULD0 1010 aa19.25■□□□□ 0.67
LSM1-201ENST00000311351 CTDP1Q9Y5B0 961 aaPredicted RBP19.25■□□□□ 0.67
LSM1-201ENST00000311351 ATP2A1O14983 1001 aa19.24■□□□□ 0.67
LSM1-201ENST00000311351 CYBAP13498 195 aa19.24■□□□□ 0.67
LSM1-201ENST00000311351 CCDC96Q2M329 555 aa19.24■□□□□ 0.67
LSM1-201ENST00000311351 LHX8Q68G74 356 aa19.24■□□□□ 0.67
LSM1-201ENST00000311351 ANKLE1Q8NAG6 615 aa19.24■□□□□ 0.67
LSM1-201ENST00000311351 DPF3Q92784 378 aa19.24■□□□□ 0.67
LSM1-201ENST00000311351 MAML3Q96JK9 1138 aa19.24■□□□□ 0.67
LSM1-201ENST00000311351 TMEM47Q9BQJ4 181 aa19.24■□□□□ 0.67
LSM1-201ENST00000311351 HTATIP2Q9BUP3 242 aa19.24■□□□□ 0.67
LSM1-201ENST00000311351 RNF216Q9NWF9 866 aaPredicted RBP19.24■□□□□ 0.67
LSM1-201ENST00000311351 RAD50Q92878 1312 aa19.24■□□□□ 0.67
LSM1-201ENST00000311351 MCM3APO60318 1980 aa19.23■□□□□ 0.67
LSM1-201ENST00000311351 TOP1P11387 765 aaKnown RBP19.23■□□□□ 0.67
LSM1-201ENST00000311351 PCP11498 1178 aaKnown RBP19.23■□□□□ 0.67
LSM1-201ENST00000311351 CHMLP26374 656 aa19.23■□□□□ 0.67
LSM1-201ENST00000311351 CNGA1P29973 690 aa19.23■□□□□ 0.67
LSM1-201ENST00000311351 RCSD1Q6JBY9 416 aa19.23■□□□□ 0.67
LSM1-201ENST00000311351 FAM160B2Q86V87 743 aa19.23■□□□□ 0.67
LSM1-201ENST00000311351 SKAP1Q86WV1 359 aa19.23■□□□□ 0.67
LSM1-201ENST00000311351 ZKSCAN3Q9BRR0 538 aa19.23■□□□□ 0.67
LSM1-201ENST00000311351 TCP11L1Q9NUJ3 509 aa19.23■□□□□ 0.67
LSM1-201ENST00000311351 SLC5A4Q9NY91 659 aa19.23■□□□□ 0.67
LSM1-201ENST00000311351 SMCHD1A6NHR9 2005 aa19.23■□□□□ 0.67
LSM1-201ENST00000311351 H0YGN5 161 aa19.22■□□□□ 0.67
LSM1-201ENST00000311351 CAPN2P17655 700 aa19.22■□□□□ 0.67
LSM1-201ENST00000311351 SNAP25P60880 206 aa19.22■□□□□ 0.67
LSM1-201ENST00000311351 NECAB2Q7Z6G3 386 aa19.22■□□□□ 0.67
LSM1-201ENST00000311351 CHURC1Q8WUH1 139 aa19.22■□□□□ 0.67
LSM1-201ENST00000311351 DCAF4Q8WV16 495 aa19.22■□□□□ 0.67
LSM1-201ENST00000311351 ESR2Q92731 530 aa19.22■□□□□ 0.67
LSM1-201ENST00000311351 HOMER2Q9NSB8 354 aa19.22■□□□□ 0.67
LSM1-201ENST00000311351 DDX20Q9UHI6 824 aaKnown RBP19.22■□□□□ 0.67
LSM1-201ENST00000311351 ZNF536O15090 1300 aa19.22■□□□□ 0.67
LSM1-201ENST00000311351 FRMPD2Q68DX3 1309 aaPredicted RBP19.22■□□□□ 0.67
LSM1-201ENST00000311351 B4E1Z4 1266 aa19.21■□□□□ 0.67
LSM1-201ENST00000311351 KDM4AO75164 1064 aa19.21■□□□□ 0.67
LSM1-201ENST00000311351 TAL1P17542 331 aaPredicted RBP19.21■□□□□ 0.67
LSM1-201ENST00000311351 OAZ1P54368 228 aa19.21■□□□□ 0.67
LSM1-201ENST00000311351 IMMTQ16891 758 aaKnown RBP19.21■□□□□ 0.67
LSM1-201ENST00000311351 ZNF792Q3KQV3 632 aa19.21■□□□□ 0.67
LSM1-201ENST00000311351 PRAMEF19Q5SWL8 479 aa19.21■□□□□ 0.67
LSM1-201ENST00000311351 TTBK2Q6IQ55 1244 aa19.21■□□□□ 0.67
LSM1-201ENST00000311351 CCDC174Q6PII3 467 aa19.21■□□□□ 0.67
LSM1-201ENST00000311351 PRR12Q9ULL5 1215 aa19.21■□□□□ 0.67
LSM1-201ENST00000311351 PLA2G6O60733 806 aa19.2■□□□□ 0.66
LSM1-201ENST00000311351 SLC16A2P36021 539 aa19.2■□□□□ 0.66
LSM1-201ENST00000311351 ANO1Q5XXA6 986 aa19.2■□□□□ 0.66
LSM1-201ENST00000311351 AGBL1Q96MI9 1066 aa19.2■□□□□ 0.66
LSM1-201ENST00000311351 C11orf49Q9H6J7 331 aa19.2■□□□□ 0.66
LSM1-201ENST00000311351 CTNNA3Q9UI47 895 aa19.2■□□□□ 0.66
LSM1-201ENST00000311351 PFASO15067 1338 aa19.2■□□□□ 0.66
LSM1-201ENST00000311351 LCTP09848 1927 aa19.19■□□□□ 0.66
LSM1-201ENST00000311351 PDHBP11177 359 aa19.19■□□□□ 0.66
LSM1-201ENST00000311351 PTH1RQ03431 593 aa19.19■□□□□ 0.66
LSM1-201ENST00000311351 RUFY2Q8WXA3 655 aa19.19■□□□□ 0.66
LSM1-201ENST00000311351 DDX11Q96FC9 970 aa19.19■□□□□ 0.66
LSM1-201ENST00000311351 TINF2Q9BSI4 451 aa19.19■□□□□ 0.66
LSM1-201ENST00000311351 GPCPD1Q9NPB8 672 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms