RNA–Protein interactions for RNA: ENST00000308987.5

CKS1B-201, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKS1B, Length 759 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-201ENST00000308987 SRP68Q9UHB9 627 aaKnown RBP6.34□□□□□ -1.39
CKS1B-201ENST00000308987 UBR2Q8IWV8 1755 aa6.34□□□□□ -1.4
CKS1B-201ENST00000308987 CNTNAP4Q9C0A0 1308 aa6.33□□□□□ -1.4
CKS1B-201ENST00000308987 FER1L6Q2WGJ9 1857 aa6.33□□□□□ -1.4
CKS1B-201ENST00000308987 RPS6KA4O75676 772 aa6.33□□□□□ -1.4
CKS1B-201ENST00000308987 TOMM70O94826 608 aa6.33□□□□□ -1.4
CKS1B-201ENST00000308987 CES1P23141 567 aa6.33□□□□□ -1.4
CKS1B-201ENST00000308987 TNNT2P45379 298 aaPredicted RBP6.33□□□□□ -1.4
CKS1B-201ENST00000308987 OCLNQ16625 522 aa6.33□□□□□ -1.4
CKS1B-201ENST00000308987 SWI5Q1ZZU3 235 aa6.33□□□□□ -1.4
CKS1B-201ENST00000308987 C9orf131Q5VYM1 1079 aa6.33□□□□□ -1.4
CKS1B-201ENST00000308987 STK11IPQ8N1F8 1099 aa6.33□□□□□ -1.4
CKS1B-201ENST00000308987 TMEM102Q8N9M5 508 aaPredicted RBP6.33□□□□□ -1.4
CKS1B-201ENST00000308987 BSNDQ8WZ55 320 aa6.33□□□□□ -1.4
CKS1B-201ENST00000308987 NXPE3Q969Y0 559 aa6.33□□□□□ -1.4
CKS1B-201ENST00000308987 BCL11AQ9H165 835 aa6.33□□□□□ -1.4
CKS1B-201ENST00000308987 COL11A2P13942 1736 aaPredicted RBP6.33□□□□□ -1.4
CKS1B-201ENST00000308987 SIPA1L3O60292 1781 aaPredicted RBP6.32□□□□□ -1.4
CKS1B-201ENST00000308987 ERVV-2B6SEH9 535 aa6.32□□□□□ -1.4
CKS1B-201ENST00000308987 CHRNA5P30532 468 aa6.32□□□□□ -1.4
CKS1B-201ENST00000308987 MESP2Q0VG99 397 aa6.32□□□□□ -1.4
CKS1B-201ENST00000308987 MAP7Q14244 749 aa6.32□□□□□ -1.4
CKS1B-201ENST00000308987 B4GALNT3Q6L9W6 998 aa6.32□□□□□ -1.4
CKS1B-201ENST00000308987 ZNF438Q7Z4V0 828 aa6.32□□□□□ -1.4
CKS1B-201ENST00000308987 CILP2Q8IUL8 1156 aa6.32□□□□□ -1.4
CKS1B-201ENST00000308987 NLGN1Q8N2Q7 840 aa6.32□□□□□ -1.4
CKS1B-201ENST00000308987 CCDC136Q96JN2 1154 aa6.32□□□□□ -1.4
CKS1B-201ENST00000308987 RC3H2Q9HBD1 1191 aaKnown RBP6.32□□□□□ -1.4
CKS1B-201ENST00000308987 STIM2Q9P246 746 aa6.32□□□□□ -1.4
CKS1B-201ENST00000308987 USP42Q9H9J4 1324 aaKnown RBP6.31□□□□□ -1.4
CKS1B-201ENST00000308987 TCERG1O14776 1098 aaKnown RBP6.31□□□□□ -1.4
CKS1B-201ENST00000308987 RNASE1P07998 156 aaKnown RBP6.31□□□□□ -1.4
CKS1B-201ENST00000308987 TM4SF1P30408 202 aa6.31□□□□□ -1.4
CKS1B-201ENST00000308987 CRKLP46109 303 aaKnown RBP6.31□□□□□ -1.4
CKS1B-201ENST00000308987 ZNF530Q6P9A1 599 aaPredicted RBP6.31□□□□□ -1.4
CKS1B-201ENST00000308987 JMYQ8N9B5 988 aa6.31□□□□□ -1.4
CKS1B-201ENST00000308987 STK32AQ8WU08 396 aa6.31□□□□□ -1.4
CKS1B-201ENST00000308987 FAM84AQ96KN4 292 aa6.31□□□□□ -1.4
CKS1B-201ENST00000308987 SOX17Q9H6I2 414 aaPredicted RBP6.31□□□□□ -1.4
CKS1B-201ENST00000308987 MBNL3Q9NUK0 354 aaKnown RBP6.31□□□□□ -1.4
CKS1B-201ENST00000308987 CCDC87Q9NVE4 849 aa6.31□□□□□ -1.4
CKS1B-201ENST00000308987 NOP58Q9Y2X3 529 aaKnown RBP6.31□□□□□ -1.4
CKS1B-201ENST00000308987 ACTL7BQ9Y614 415 aa6.31□□□□□ -1.4
CKS1B-201ENST00000308987 SLX4Q8IY92 1834 aa6.31□□□□□ -1.4
CKS1B-201ENST00000308987 PLEKHG2Q9H7P9 1386 aa6.31□□□□□ -1.4
CKS1B-201ENST00000308987 POLRMTO00411 1230 aaKnown RBP6.3□□□□□ -1.4
CKS1B-201ENST00000308987 ADH5P11766 374 aa6.3□□□□□ -1.4
CKS1B-201ENST00000308987 RAB6AP20340 208 aa6.3□□□□□ -1.4
CKS1B-201ENST00000308987 FUT4P22083 530 aa6.3□□□□□ -1.4
CKS1B-201ENST00000308987 HMGB2P26583 209 aaKnown RBP6.3□□□□□ -1.4
CKS1B-201ENST00000308987 RFC4P35249 363 aa6.3□□□□□ -1.4
CKS1B-201ENST00000308987 ANP32AP39687 249 aaKnown RBP6.3□□□□□ -1.4
CKS1B-201ENST00000308987 LILRA6Q6PI73 481 aa6.3□□□□□ -1.4
CKS1B-201ENST00000308987 IPO9Q96P70 1041 aaKnown RBP6.3□□□□□ -1.4
CKS1B-201ENST00000308987 OSMRQ99650 979 aa6.3□□□□□ -1.4
CKS1B-201ENST00000308987 SEMA6CQ9H3T2 930 aa6.3□□□□□ -1.4
CKS1B-201ENST00000308987 CARMIL3Q8ND23 1372 aa6.3□□□□□ -1.4
CKS1B-201ENST00000308987 MRC1P22897 1456 aa6.29□□□□□ -1.4
CKS1B-201ENST00000308987 ARFGEF2Q9Y6D5 1785 aa6.29□□□□□ -1.4
CKS1B-201ENST00000308987 PRRG2O14669 202 aa6.29□□□□□ -1.4
CKS1B-201ENST00000308987 CD8BP10966 210 aa6.29□□□□□ -1.4
CKS1B-201ENST00000308987 RRP1P56182 461 aaKnown RBP6.29□□□□□ -1.4
CKS1B-201ENST00000308987 GSTM4Q03013 218 aa6.29□□□□□ -1.4
CKS1B-201ENST00000308987 C8orf34Q49A92 452 aa6.29□□□□□ -1.4
CKS1B-201ENST00000308987 OGFOD3Q6PK18 319 aa6.29□□□□□ -1.4
CKS1B-201ENST00000308987 XKR5Q6UX68 686 aa6.29□□□□□ -1.4
CKS1B-201ENST00000308987 DNAJC10Q8IXB1 793 aa6.29□□□□□ -1.4
CKS1B-201ENST00000308987 LGR6Q9HBX8 967 aa6.29□□□□□ -1.4
CKS1B-201ENST00000308987 C1GALT1Q9NS00 363 aa6.29□□□□□ -1.4
CKS1B-201ENST00000308987 RNF181Q9P0P0 153 aa6.29□□□□□ -1.4
CKS1B-201ENST00000308987 ADAMTS6Q9UKP5 1117 aa6.29□□□□□ -1.4
CKS1B-201ENST00000308987 TNRC18O15417 2968 aaPredicted RBP6.29□□□□□ -1.4
CKS1B-201ENST00000308987 NCANO14594 1321 aa6.28□□□□□ -1.4
CKS1B-201ENST00000308987 SOS1Q07889 1333 aaPredicted RBP6.28□□□□□ -1.4
CKS1B-201ENST00000308987 ESRRAP11474 423 aaPredicted RBP6.28□□□□□ -1.4
CKS1B-201ENST00000308987 CYP19A1P11511 503 aaPredicted RBP6.28□□□□□ -1.4
CKS1B-201ENST00000308987 PCSK2P16519 638 aa6.28□□□□□ -1.4
CKS1B-201ENST00000308987 IL13P35225 146 aa6.28□□□□□ -1.4
CKS1B-201ENST00000308987 MTHFSP49914 203 aa6.28□□□□□ -1.4
CKS1B-201ENST00000308987 FSTL1Q12841 308 aa6.28□□□□□ -1.4
CKS1B-201ENST00000308987 SLC39A6Q13433 755 aa6.28□□□□□ -1.4
CKS1B-201ENST00000308987 PLEKHO1Q53GL0 409 aaPredicted RBP6.28□□□□□ -1.4
CKS1B-201ENST00000308987 DALRD3Q5D0E6 543 aaKnown RBP6.28□□□□□ -1.4
CKS1B-201ENST00000308987 USPL1Q5W0Q7 1092 aa6.28□□□□□ -1.4
CKS1B-201ENST00000308987 SEZ6L2Q6UXD5 910 aa6.28□□□□□ -1.4
CKS1B-201ENST00000308987 MISP3Q96FF7 219 aa6.28□□□□□ -1.4
CKS1B-201ENST00000308987 ACSS3Q9H6R3 686 aa6.28□□□□□ -1.4
CKS1B-201ENST00000308987 PANK3Q9H999 370 aa6.28□□□□□ -1.4
CKS1B-201ENST00000308987 CXXC1Q9P0U4 656 aaPredicted RBP6.28□□□□□ -1.4
CKS1B-201ENST00000308987 RCAN3Q9UKA8 241 aa6.28□□□□□ -1.4
CKS1B-201ENST00000308987 ZMIZ1Q9ULJ6 1067 aa6.28□□□□□ -1.4
CKS1B-201ENST00000308987 SCN7AQ01118 1682 aa6.28□□□□□ -1.4
CKS1B-201ENST00000308987 BCORQ6W2J9 1755 aa6.28□□□□□ -1.4
CKS1B-201ENST00000308987 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.27□□□□□ -1.41
CKS1B-201ENST00000308987 DYNC1LI2O43237 492 aaPredicted RBP6.27□□□□□ -1.41
CKS1B-201ENST00000308987 HSP90AB1P08238 724 aaKnown RBP6.27□□□□□ -1.41
CKS1B-201ENST00000308987 CFPP27918 469 aa6.27□□□□□ -1.41
CKS1B-201ENST00000308987 DNM1Q05193 864 aaKnown RBP6.27□□□□□ -1.41
CKS1B-201ENST00000308987 NFIXQ14938 502 aa6.27□□□□□ -1.41
CKS1B-201ENST00000308987 SULT6B1Q6IMI4 303 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms