RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 RPN1P04843 607 aaKnown RBP19.07■□□□□ 0.64
SYNPO-201ENST00000307662 RPSAP08865 295 aaKnown RBP19.07■□□□□ 0.64
SYNPO-201ENST00000307662 ADCY8P40145 1251 aa19.07■□□□□ 0.64
SYNPO-201ENST00000307662 SP4Q02446 784 aa19.07■□□□□ 0.64
SYNPO-201ENST00000307662 SCRN1Q12765 414 aa19.07■□□□□ 0.64
SYNPO-201ENST00000307662 DDX27Q96GQ7 796 aaKnown RBP19.07■□□□□ 0.64
SYNPO-201ENST00000307662 PFDN4Q9NQP4 134 aa19.07■□□□□ 0.64
SYNPO-201ENST00000307662 PDE8AO60658 829 aa19.07■□□□□ 0.64
SYNPO-201ENST00000307662 RASIP1Q5U651 963 aa19.07■□□□□ 0.64
SYNPO-201ENST00000307662 GABPB2Q8TAK5 448 aaPredicted RBP19.07■□□□□ 0.64
SYNPO-201ENST00000307662 GSDMBQ8TAX9 411 aa19.07■□□□□ 0.64
SYNPO-201ENST00000307662 ZC3H12CQ9C0D7 883 aaKnown RBP19.07■□□□□ 0.64
SYNPO-201ENST00000307662 TYW1Q9NV66 732 aaKnown RBP19.07■□□□□ 0.64
SYNPO-201ENST00000307662 ENC1O14682 589 aa19.07■□□□□ 0.64
SYNPO-201ENST00000307662 TERF2Q15554 542 aa19.07■□□□□ 0.64
SYNPO-201ENST00000307662 DPCR1Q3MIW9 517 aa19.07■□□□□ 0.64
SYNPO-201ENST00000307662 PARP10Q53GL7 1025 aa19.07■□□□□ 0.64
SYNPO-201ENST00000307662 PALM2Q8IXS6 379 aa19.07■□□□□ 0.64
SYNPO-201ENST00000307662 KRT12Q99456 494 aa19.07■□□□□ 0.64
SYNPO-201ENST00000307662 KDM5AP29375 1690 aaKnown RBP19.07■□□□□ 0.64
SYNPO-201ENST00000307662 THAP12O43422 761 aa19.07■□□□□ 0.64
SYNPO-201ENST00000307662 STRN3Q13033 797 aa19.07■□□□□ 0.64
SYNPO-201ENST00000307662 FBXO38Q6PIJ6 1188 aa19.07■□□□□ 0.64
SYNPO-201ENST00000307662 HINFPQ9BQA5 517 aa19.07■□□□□ 0.64
SYNPO-201ENST00000307662 USP44Q9H0E7 712 aa19.07■□□□□ 0.64
SYNPO-201ENST00000307662 VCX3AQ9NNX9 186 aa19.07■□□□□ 0.64
SYNPO-201ENST00000307662 REXO1Q8N1G1 1221 aaKnown RBP19.06■□□□□ 0.64
SYNPO-201ENST00000307662 RIC8AQ9NPQ8 531 aa19.06■□□□□ 0.64
SYNPO-201ENST00000307662 INTS9Q9NV88 658 aaKnown RBP19.06■□□□□ 0.64
SYNPO-201ENST00000307662 RTCBQ9Y3I0 505 aaKnown RBP19.06■□□□□ 0.64
SYNPO-201ENST00000307662 PCDHA5Q9Y5H7 936 aa19.06■□□□□ 0.64
SYNPO-201ENST00000307662 KDM3AQ9Y4C1 1321 aa19.06■□□□□ 0.64
SYNPO-201ENST00000307662 HIBADHP31937 336 aaKnown RBP19.06■□□□□ 0.64
SYNPO-201ENST00000307662 HNRNPH2P55795 449 aaKnown RBP19.06■□□□□ 0.64
SYNPO-201ENST00000307662 GOLGA8FQ08AF8 430 aa19.06■□□□□ 0.64
SYNPO-201ENST00000307662 GOLGA8DPQ0D2H9 430 aa19.06■□□□□ 0.64
SYNPO-201ENST00000307662 TRMT2AQ8IZ69 625 aaKnown RBP19.06■□□□□ 0.64
SYNPO-201ENST00000307662 STAP2Q9UGK3 403 aa19.06■□□□□ 0.64
SYNPO-201ENST00000307662 SMIM24O75264 130 aa19.06■□□□□ 0.64
SYNPO-201ENST00000307662 PDIA3P30101 505 aaKnown RBP19.06■□□□□ 0.64
SYNPO-201ENST00000307662 RBL2Q08999 1139 aa19.06■□□□□ 0.64
SYNPO-201ENST00000307662 CFAP61Q8NHU2 1237 aa19.06■□□□□ 0.64
SYNPO-201ENST00000307662 PPP6R2O75170 966 aa19.06■□□□□ 0.64
SYNPO-201ENST00000307662 ADD1P35611 737 aaKnown RBP19.06■□□□□ 0.64
SYNPO-201ENST00000307662 SH3TC1Q8TE82 1336 aa19.06■□□□□ 0.64
SYNPO-201ENST00000307662 HSPD1P10809 573 aaKnown RBP19.05■□□□□ 0.64
SYNPO-201ENST00000307662 POLR2FP61218 127 aaKnown RBP19.05■□□□□ 0.64
SYNPO-201ENST00000307662 SLC39A14Q15043 492 aa19.05■□□□□ 0.64
SYNPO-201ENST00000307662 E2F5Q15329 346 aa19.05■□□□□ 0.64
SYNPO-201ENST00000307662 CTAGE3PQ8IX95 158 aa19.05■□□□□ 0.64
SYNPO-201ENST00000307662 FBXO18Q8NFZ0 1043 aa19.05■□□□□ 0.64
SYNPO-201ENST00000307662 PPP4R1Q8TF05 950 aa19.05■□□□□ 0.64
SYNPO-201ENST00000307662 PCDHB13Q9Y5F0 798 aa19.05■□□□□ 0.64
SYNPO-201ENST00000307662 EIF6P56537 245 aaKnown RBP19.05■□□□□ 0.64
SYNPO-201ENST00000307662 PPARAQ07869 468 aa19.05■□□□□ 0.64
SYNPO-201ENST00000307662 CASC4Q6P4E1 433 aa19.05■□□□□ 0.64
SYNPO-201ENST00000307662 AATFQ9NY61 560 aaKnown RBP eCLIP19.05■□□□□ 0.64
SYNPO-201ENST00000307662 H2AFZP0C0S5 128 aa19.05■□□□□ 0.64
SYNPO-201ENST00000307662 PNMA6AP0CW24 399 aaPredicted RBP19.05■□□□□ 0.64
SYNPO-201ENST00000307662 H2AFVQ71UI9 128 aa19.05■□□□□ 0.64
SYNPO-201ENST00000307662 ARMC9Q7Z3E5 817 aa19.05■□□□□ 0.64
SYNPO-201ENST00000307662 RASEFQ8IZ41 740 aa19.05■□□□□ 0.64
SYNPO-201ENST00000307662 UHMK1Q8TAS1 419 aaKnown RBP19.05■□□□□ 0.64
SYNPO-201ENST00000307662 OSBPL3Q9H4L5 887 aa19.05■□□□□ 0.64
SYNPO-201ENST00000307662 COG7P83436 770 aa19.04■□□□□ 0.64
SYNPO-201ENST00000307662 BLIDQ8IZY5 108 aa19.04■□□□□ 0.64
SYNPO-201ENST00000307662 MAP4K1Q92918 833 aa19.04■□□□□ 0.64
SYNPO-201ENST00000307662 EAF2Q96CJ1 260 aaPredicted RBP19.04■□□□□ 0.64
SYNPO-201ENST00000307662 EVI5O60447 810 aa19.04■□□□□ 0.64
SYNPO-201ENST00000307662 EHHADHQ08426 723 aa19.04■□□□□ 0.64
SYNPO-201ENST00000307662 GSDMAQ96QA5 445 aa19.04■□□□□ 0.64
SYNPO-201ENST00000307662 SLC8A3P57103 927 aa19.04■□□□□ 0.64
SYNPO-201ENST00000307662 PTPROQ16827 1216 aa19.04■□□□□ 0.64
SYNPO-201ENST00000307662 ADCK5Q3MIX3 580 aa19.04■□□□□ 0.64
SYNPO-201ENST00000307662 PAXIP1Q6ZW49 1069 aaPredicted RBP19.04■□□□□ 0.64
SYNPO-201ENST00000307662 CERS3Q8IU89 383 aa19.04■□□□□ 0.64
SYNPO-201ENST00000307662 LRRC8CQ8TDW0 803 aa19.04■□□□□ 0.64
SYNPO-201ENST00000307662 SYMPKQ92797 1274 aaKnown RBP19.04■□□□□ 0.64
SYNPO-201ENST00000307662 ORAI2Q96SN7 254 aa19.04■□□□□ 0.64
SYNPO-201ENST00000307662 POLR3EQ9NVU0 708 aa19.04■□□□□ 0.64
SYNPO-201ENST00000307662 DAPK3O43293 454 aa19.04■□□□□ 0.64
SYNPO-201ENST00000307662 MAEAQ7L5Y9 396 aa19.04■□□□□ 0.64
SYNPO-201ENST00000307662 TMEM87AQ8NBN3 555 aa19.04■□□□□ 0.64
SYNPO-201ENST00000307662 SH2D4AQ9H788 454 aa19.04■□□□□ 0.64
SYNPO-201ENST00000307662 ACTR5Q9H9F9 607 aaPredicted RBP19.04■□□□□ 0.64
SYNPO-201ENST00000307662 BTBD18B2RXH4 712 aa19.03■□□□□ 0.64
SYNPO-201ENST00000307662 TOM1O60784 492 aa19.03■□□□□ 0.64
SYNPO-201ENST00000307662 RUNDC3BQ96NL0 473 aa19.03■□□□□ 0.64
SYNPO-201ENST00000307662 ARMCX3Q9UH62 379 aaPredicted RBP19.03■□□□□ 0.64
SYNPO-201ENST00000307662 MAGI2Q86UL8 1455 aa19.03■□□□□ 0.64
SYNPO-201ENST00000307662 GIPC1O14908 333 aa19.03■□□□□ 0.64
SYNPO-201ENST00000307662 ZMYND10O75800 440 aa19.03■□□□□ 0.64
SYNPO-201ENST00000307662 TRIM37O94972 964 aa19.03■□□□□ 0.64
SYNPO-201ENST00000307662 RASSF7Q02833 373 aa19.03■□□□□ 0.64
SYNPO-201ENST00000307662 FANCBQ8NB91 859 aa19.03■□□□□ 0.64
SYNPO-201ENST00000307662 RSAD2Q8WXG1 361 aa19.03■□□□□ 0.64
SYNPO-201ENST00000307662 PASKQ96RG2 1323 aa19.03■□□□□ 0.64
SYNPO-201ENST00000307662 DKC1O60832 514 aaKnown RBP eCLIP19.03■□□□□ 0.64
SYNPO-201ENST00000307662 HEXIM1O94992 359 aaKnown RBP19.03■□□□□ 0.64
SYNPO-201ENST00000307662 BBOF1Q8ND07 529 aa19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms