RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 SCAF8Q9UPN6 1271 aaKnown RBP10.39□□□□□ -0.75
PTPRE-202ENST00000306042 CCDC172P0C7W6 258 aa10.39□□□□□ -0.75
PTPRE-202ENST00000306042 ZNF165P49910 485 aa10.39□□□□□ -0.75
PTPRE-202ENST00000306042 IGBP1P78318 339 aa10.39□□□□□ -0.75
PTPRE-202ENST00000306042 RNF207Q6ZRF8 634 aa10.39□□□□□ -0.75
PTPRE-202ENST00000306042 SYNCQ9H7C4 482 aa10.39□□□□□ -0.75
PTPRE-202ENST00000306042 RABGAP1Q9Y3P9 1069 aa10.39□□□□□ -0.75
PTPRE-202ENST00000306042 ANKRD62A6NC57 917 aa10.39□□□□□ -0.75
PTPRE-202ENST00000306042 ZBTB24O43167 697 aaPredicted RBP10.39□□□□□ -0.75
PTPRE-202ENST00000306042 SPAG1Q07617 926 aa10.39□□□□□ -0.75
PTPRE-202ENST00000306042 SREBF2Q12772 1141 aa10.39□□□□□ -0.75
PTPRE-202ENST00000306042 CEP95Q96GE4 821 aa10.39□□□□□ -0.75
PTPRE-202ENST00000306042 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.39□□□□□ -0.75
PTPRE-202ENST00000306042 ZFYVE28Q9HCC9 887 aa10.39□□□□□ -0.75
PTPRE-202ENST00000306042 MYO6Q9UM54 1294 aa10.39□□□□□ -0.75
PTPRE-202ENST00000306042 ADCK5Q3MIX3 580 aa10.39□□□□□ -0.75
PTPRE-202ENST00000306042 RASEFQ8IZ41 740 aa10.39□□□□□ -0.75
PTPRE-202ENST00000306042 PRPF38AQ8NAV1 312 aaKnown RBP10.39□□□□□ -0.75
PTPRE-202ENST00000306042 RAET1EQ8TD07 263 aa10.39□□□□□ -0.75
PTPRE-202ENST00000306042 CPLX3Q8WVH0 158 aa10.39□□□□□ -0.75
PTPRE-202ENST00000306042 TMEM39BQ9GZU3 492 aa10.39□□□□□ -0.75
PTPRE-202ENST00000306042 VPS33BQ9H267 617 aa10.39□□□□□ -0.75
PTPRE-202ENST00000306042 FRMD4BQ9Y2L6 1034 aa10.39□□□□□ -0.75
PTPRE-202ENST00000306042 F5H6K3 240 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 DTNBO60941 627 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 CAVIN2O95810 425 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 KLRC3Q07444 240 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 XKR9Q5GH70 373 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 CABP7Q86V35 215 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 NOSTRINQ8IVI9 506 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 RNF169Q8NCN4 708 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 DEPTORQ8TB45 409 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 TBC1D5Q92609 795 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 TPCN1Q9ULQ1 816 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 FLT1P17948 1338 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 PNMA6FA0A0J9YX94 578 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 SH2B2O14492 632 aaPredicted RBP10.38□□□□□ -0.75
PTPRE-202ENST00000306042 YEATS4O95619 227 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 LIFRP42702 1097 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 BIRC3Q13489 604 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 RCSD1Q6JBY9 416 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 MYCT1Q8N699 235 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 UPF1Q92900 1129 aaKnown RBP eCLIP10.38□□□□□ -0.75
PTPRE-202ENST00000306042 PARK7Q99497 189 aaKnown RBP10.38□□□□□ -0.75
PTPRE-202ENST00000306042 TMEM47Q9BQJ4 181 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 RAVER2Q9HCJ3 691 aaKnown RBP10.38□□□□□ -0.75
PTPRE-202ENST00000306042 ELP1O95163 1332 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 KDM3AQ9Y4C1 1321 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 C19orf81C9J6K1 198 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 FDX1P10109 184 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 MTMR2Q13614 643 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 HERC4Q5GLZ8 1057 aaPredicted RBP10.38□□□□□ -0.75
PTPRE-202ENST00000306042 GPC2Q8N158 579 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 ZNF280CQ8ND82 737 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 CCL15-CCL14A0A0B4J2E2 113 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 CUTAO60888 179 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 EIF2AK2P19525 551 aaKnown RBP10.38□□□□□ -0.75
PTPRE-202ENST00000306042 SFPQP23246 707 aaKnown RBP eCLIP10.38□□□□□ -0.75
PTPRE-202ENST00000306042 KLRK1P26718 216 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 COPB2P35606 906 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 SNAP25P60880 206 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 CCL15Q16663 113 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 DPH6Q7L8W6 267 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 ZBTB8OSQ8IWT0 167 aa10.38□□□□□ -0.75
PTPRE-202ENST00000306042 ZNF512BQ96KM6 892 aaPredicted RBP10.38□□□□□ -0.75
PTPRE-202ENST00000306042 A0A1B0GVL5 298 aa10.37□□□□□ -0.75
PTPRE-202ENST00000306042 GSG1L2A8MUP6 293 aa10.37□□□□□ -0.75
PTPRE-202ENST00000306042 CETPP11597 493 aa10.37□□□□□ -0.75
PTPRE-202ENST00000306042 FCER1AP12319 257 aa10.37□□□□□ -0.75
PTPRE-202ENST00000306042 TNNT3P45378 269 aaPredicted RBP10.37□□□□□ -0.75
PTPRE-202ENST00000306042 LRCH2Q5VUJ6 765 aa10.37□□□□□ -0.75
PTPRE-202ENST00000306042 MFSD14CQ5VZR4 134 aa10.37□□□□□ -0.75
PTPRE-202ENST00000306042 ATP6V0A1Q93050 837 aa10.37□□□□□ -0.75
PTPRE-202ENST00000306042 ZNF577Q9BSK1 485 aa10.37□□□□□ -0.75
PTPRE-202ENST00000306042 GBA2Q9HCG7 927 aaPredicted RBP10.37□□□□□ -0.75
PTPRE-202ENST00000306042 KCNH3Q9ULD8 1083 aa10.37□□□□□ -0.75
PTPRE-202ENST00000306042 RAD51AP2Q09MP3 1159 aa10.37□□□□□ -0.75
PTPRE-202ENST00000306042 ARHGAP29Q52LW3 1261 aa10.37□□□□□ -0.75
PTPRE-202ENST00000306042 TAF4BQ92750 862 aa10.37□□□□□ -0.75
PTPRE-202ENST00000306042 RPAP3Q9H6T3 665 aaPredicted RBP10.37□□□□□ -0.75
PTPRE-202ENST00000306042 AKR1B1P15121 316 aa10.37□□□□□ -0.75
PTPRE-202ENST00000306042 RNF146Q9NTX7 359 aa10.37□□□□□ -0.75
PTPRE-202ENST00000306042 ZNF215Q9UL58 517 aaPredicted RBP10.37□□□□□ -0.75
PTPRE-202ENST00000306042 IFT172Q9UG01 1749 aa10.37□□□□□ -0.75
PTPRE-202ENST00000306042 BTBD18B2RXH4 712 aa10.37□□□□□ -0.75
PTPRE-202ENST00000306042 UBE2Q2LH0YL09 131 aa10.37□□□□□ -0.75
PTPRE-202ENST00000306042 OR52Z1P0C646 297 aa10.37□□□□□ -0.75
PTPRE-202ENST00000306042 HOXA10P31260 410 aaPredicted RBP10.37□□□□□ -0.75
PTPRE-202ENST00000306042 STAT3P40763 770 aa10.37□□□□□ -0.75
PTPRE-202ENST00000306042 ALX1Q15699 326 aa10.37□□□□□ -0.75
PTPRE-202ENST00000306042 C12orf60Q5U649 245 aa10.37□□□□□ -0.75
PTPRE-202ENST00000306042 MAP1SQ66K74 1059 aaPredicted RBP10.37□□□□□ -0.75
PTPRE-202ENST00000306042 CNNM4Q6P4Q7 775 aa10.37□□□□□ -0.75
PTPRE-202ENST00000306042 CAMKK2Q96RR4 588 aa10.37□□□□□ -0.75
PTPRE-202ENST00000306042 KNDC1Q76NI1 1749 aa10.37□□□□□ -0.75
PTPRE-202ENST00000306042 TRAF5O00463 557 aa10.36□□□□□ -0.75
PTPRE-202ENST00000306042 PPP1R2P41236 205 aa10.36□□□□□ -0.75
PTPRE-202ENST00000306042 TECP42680 631 aa10.36□□□□□ -0.75
PTPRE-202ENST00000306042 RFX5P48382 616 aaPredicted RBP10.36□□□□□ -0.75
PTPRE-202ENST00000306042 CEP135Q66GS9 1140 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms