RNA–Protein interactions for RNA: ENST00000302516.9

SF3B3-201, Transcript of splicing factor 3b subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B3, Length 9,720 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-201ENST00000302516 RXRAP19793 462 aa8.38□□□□□ -1.07
SF3B3-201ENST00000302516 EIF3BP55884 814 aaKnown RBP8.38□□□□□ -1.07
SF3B3-201ENST00000302516 IPO11Q9UI26 975 aaKnown RBP8.38□□□□□ -1.07
SF3B3-201ENST00000302516 ZNF215Q9UL58 517 aaPredicted RBP8.38□□□□□ -1.07
SF3B3-201ENST00000302516 TRPC6Q9Y210 931 aa8.38□□□□□ -1.07
SF3B3-201ENST00000302516 ORC6Q9Y5N6 252 aa8.38□□□□□ -1.07
SF3B3-201ENST00000302516 TTC36A6NLP5 189 aa8.38□□□□□ -1.07
SF3B3-201ENST00000302516 CUL1Q13616 776 aa8.38□□□□□ -1.07
SF3B3-201ENST00000302516 PALM2Q8IXS6 379 aa8.38□□□□□ -1.07
SF3B3-201ENST00000302516 GSDMBQ8TAX9 411 aa8.38□□□□□ -1.07
SF3B3-201ENST00000302516 BCAS4Q8TDM0 211 aa8.38□□□□□ -1.07
SF3B3-201ENST00000302516 CENPKQ9BS16 269 aa8.38□□□□□ -1.07
SF3B3-201ENST00000302516 NCOA5Q9HCD5 579 aaKnown RBP8.38□□□□□ -1.07
SF3B3-201ENST00000302516 ZSWIM6Q9HCJ5 1215 aa8.38□□□□□ -1.07
SF3B3-201ENST00000302516 JRKLQ9Y4A0 524 aa8.38□□□□□ -1.07
SF3B3-201ENST00000302516 CUL4BQ13620 913 aa8.38□□□□□ -1.07
SF3B3-201ENST00000302516 TAF12Q16514 161 aa8.38□□□□□ -1.07
SF3B3-201ENST00000302516 RINT1Q6NUQ1 792 aa8.38□□□□□ -1.07
SF3B3-201ENST00000302516 CEP152O94986 1710 aa8.38□□□□□ -1.07
SF3B3-201ENST00000302516 ARHGAP42A6NI28 874 aa8.38□□□□□ -1.07
SF3B3-201ENST00000302516 LMNAP02545 664 aaKnown RBP8.38□□□□□ -1.07
SF3B3-201ENST00000302516 ITGA6P23229 1130 aa8.38□□□□□ -1.07
SF3B3-201ENST00000302516 PDCD2Q16342 344 aaPredicted RBP8.38□□□□□ -1.07
SF3B3-201ENST00000302516 BRDTQ58F21 947 aaPredicted RBP8.38□□□□□ -1.07
SF3B3-201ENST00000302516 MUM1L1Q5H9M0 696 aa8.38□□□□□ -1.07
SF3B3-201ENST00000302516 TRMT1LQ7Z2T5 733 aaKnown RBP8.38□□□□□ -1.07
SF3B3-201ENST00000302516 RPAINQ86UA6 219 aa8.38□□□□□ -1.07
SF3B3-201ENST00000302516 SPATA5Q8NB90 893 aa8.38□□□□□ -1.07
SF3B3-201ENST00000302516 LRRC8CQ8TDW0 803 aa8.38□□□□□ -1.07
SF3B3-201ENST00000302516 EIF2AQ9BY44 585 aaKnown RBP8.38□□□□□ -1.07
SF3B3-201ENST00000302516 LCMT1Q9UIC8 334 aa8.38□□□□□ -1.07
SF3B3-201ENST00000302516 V9GY48 417 aaPredicted RBP8.38□□□□□ -1.07
SF3B3-201ENST00000302516 KCNK3O14649 394 aa8.38□□□□□ -1.07
SF3B3-201ENST00000302516 IGSF3O75054 1194 aa8.38□□□□□ -1.07
SF3B3-201ENST00000302516 CASC4Q6P4E1 433 aa8.38□□□□□ -1.07
SF3B3-201ENST00000302516 TBC1D22AQ8WUA7 517 aa8.38□□□□□ -1.07
SF3B3-201ENST00000302516 ZNF622Q969S3 477 aaKnown RBP eCLIP8.38□□□□□ -1.072e-7■□□□□ 8.8
SF3B3-201ENST00000302516 RTEL1Q9NZ71 1219 aa8.38□□□□□ -1.07
SF3B3-201ENST00000302516 A0A087WUV0 522 aaPredicted RBP8.37□□□□□ -1.07
SF3B3-201ENST00000302516 PDE8AO60658 829 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 ADCY8P40145 1251 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 GUCY2FP51841 1108 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 ASPHQ12797 758 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 ME3Q16798 604 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 TRIM68Q6AZZ1 485 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 OTUD6AQ7L8S5 288 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.37□□□□□ -1.07
SF3B3-201ENST00000302516 HOXC9P31274 260 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 ADKP55263 362 aaKnown RBP8.37□□□□□ -1.07
SF3B3-201ENST00000302516 SH3TC1Q8TE82 1336 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 SLFNL1Q499Z3 407 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 ANGPTL2Q9UKU9 493 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 PPP6R2O75170 966 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 PRPF6O94906 941 aaKnown RBP8.37□□□□□ -1.07
SF3B3-201ENST00000302516 BPIFB4P59827 614 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 RNASE9P60153 205 aaKnown RBP8.37□□□□□ -1.07
SF3B3-201ENST00000302516 KRT81Q14533 505 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 CCDC93Q567U6 631 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 DHTKD1Q96HY7 919 aaPredicted RBP8.37□□□□□ -1.07
SF3B3-201ENST00000302516 GSDMAQ96QA5 445 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 FAM207AQ9NSI2 230 aaPredicted RBP8.37□□□□□ -1.07
SF3B3-201ENST00000302516 SAMD9LQ8IVG5 1584 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 NFATC2IPQ8NCF5 419 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 AK8Q96MA6 479 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 C1orf112Q9NSG2 853 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 CARMIL3Q8ND23 1372 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 hCG_1984214I3L0E3 225 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 RPN1P04843 607 aaKnown RBP8.37□□□□□ -1.07
SF3B3-201ENST00000302516 NT5C2P49902 561 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 ZNF713Q8N859 430 aaPredicted RBP8.37□□□□□ -1.07
SF3B3-201ENST00000302516 RNF34Q969K3 372 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 TPCN1Q9ULQ1 816 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 FAF1Q9UNN5 650 aaPredicted RBP8.37□□□□□ -1.07
SF3B3-201ENST00000302516 NBPF9Q3BBW0 867 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 GPT2Q8TD30 523 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 CDKL2Q92772 493 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 ZC3H12CQ9C0D7 883 aaKnown RBP8.37□□□□□ -1.07
SF3B3-201ENST00000302516 ATP8A2Q9NTI2 1148 aa8.37□□□□□ -1.07
SF3B3-201ENST00000302516 ARMCX3Q9UH62 379 aaPredicted RBP8.37□□□□□ -1.07
SF3B3-201ENST00000302516 TTI1O43156 1089 aa8.36□□□□□ -1.07
SF3B3-201ENST00000302516 AKNAD1Q5T1N1 836 aa8.36□□□□□ -1.07
SF3B3-201ENST00000302516 NCAPH2Q6IBW4 605 aa8.36□□□□□ -1.07
SF3B3-201ENST00000302516 NLRP7Q8WX94 980 aa8.36□□□□□ -1.07
SF3B3-201ENST00000302516 ZSCAN10Q96SZ4 725 aaPredicted RBP8.36□□□□□ -1.07
SF3B3-201ENST00000302516 PICK1Q9NRD5 415 aa8.36□□□□□ -1.07
SF3B3-201ENST00000302516 RTCBQ9Y3I0 505 aaKnown RBP8.36□□□□□ -1.07
SF3B3-201ENST00000302516 PER1O15534 1290 aaPredicted RBP8.36□□□□□ -1.07
SF3B3-201ENST00000302516 SART1O43290 800 aaKnown RBP8.36□□□□□ -1.07
SF3B3-201ENST00000302516 PDE6BP35913 854 aa8.36□□□□□ -1.07
SF3B3-201ENST00000302516 HADHQ16836 314 aaKnown RBP8.36□□□□□ -1.07
SF3B3-201ENST00000302516 FBXO31Q5XUX0 539 aaPredicted RBP8.36□□□□□ -1.07
SF3B3-201ENST00000302516 PHACTR3Q96KR7 559 aa8.36□□□□□ -1.07
SF3B3-201ENST00000302516 FAM227BQ96M60 508 aa8.36□□□□□ -1.07
SF3B3-201ENST00000302516 PANX2Q96RD6 677 aa8.36□□□□□ -1.07
SF3B3-201ENST00000302516 ITSN1Q15811 1721 aa8.36□□□□□ -1.07
SF3B3-201ENST00000302516 IL13P35225 146 aa8.36□□□□□ -1.07
SF3B3-201ENST00000302516 ZNF790Q6PG37 636 aa8.36□□□□□ -1.07
SF3B3-201ENST00000302516 ARHGEF18Q6ZSZ5 1173 aa8.36□□□□□ -1.07
SF3B3-201ENST00000302516 PBKQ96KB5 322 aa8.36□□□□□ -1.07
SF3B3-201ENST00000302516 FGFR1OP2Q9NVK5 253 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms