RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 IRF5Q13568 498 aa10.86□□□□□ -0.67
HMGN1-201ENST00000288344 COL9A3Q14050 684 aaPredicted RBP10.86□□□□□ -0.67
HMGN1-201ENST00000288344 CCDC136Q96JN2 1154 aa10.86□□□□□ -0.67
HMGN1-201ENST00000288344 LSG1Q9H089 658 aaKnown RBP10.86□□□□□ -0.67
HMGN1-201ENST00000288344 ARHGEF10LQ9HCE6 1279 aa10.86□□□□□ -0.67
HMGN1-201ENST00000288344 FBXO28Q9NVF7 368 aa10.86□□□□□ -0.67
HMGN1-201ENST00000288344 ZSWIM5Q9P217 1185 aa10.86□□□□□ -0.67
HMGN1-201ENST00000288344 CLIP2Q9UDT6 1046 aa10.86□□□□□ -0.67
HMGN1-201ENST00000288344 DNAH12Q6ZR08 3092 aa10.86□□□□□ -0.67
HMGN1-201ENST00000288344 PLA2G6O60733 806 aa10.85□□□□□ -0.67
HMGN1-201ENST00000288344 SLC3A2P08195 630 aaKnown RBP10.85□□□□□ -0.67
HMGN1-201ENST00000288344 SNHG28P0DPA3 235 aa10.85□□□□□ -0.67
HMGN1-201ENST00000288344 NECTIN1Q15223 517 aa10.85□□□□□ -0.67
HMGN1-201ENST00000288344 MORN1Q5T089 497 aa10.85□□□□□ -0.67
HMGN1-201ENST00000288344 SPICE1Q8N0Z3 855 aa10.85□□□□□ -0.67
HMGN1-201ENST00000288344 GPRC5AQ8NFJ5 357 aa10.85□□□□□ -0.67
HMGN1-201ENST00000288344 SMCR8Q8TEV9 937 aaPredicted RBP10.85□□□□□ -0.67
HMGN1-201ENST00000288344 GTF3C2Q8WUA4 911 aaPredicted RBP10.85□□□□□ -0.67
HMGN1-201ENST00000288344 ZNF333Q96JL9 665 aa10.85□□□□□ -0.67
HMGN1-201ENST00000288344 TTC14Q96N46 770 aa10.85□□□□□ -0.67
HMGN1-201ENST00000288344 FEZ1Q99689 392 aa10.85□□□□□ -0.67
HMGN1-201ENST00000288344 ESYT1Q9BSJ8 1104 aa10.85□□□□□ -0.67
HMGN1-201ENST00000288344 PPP4R2Q9NY27 417 aa10.85□□□□□ -0.67
HMGN1-201ENST00000288344 GTF3C3Q9Y5Q9 886 aa10.85□□□□□ -0.67
HMGN1-201ENST00000288344 NEDD4P46934 1319 aa10.85□□□□□ -0.67
HMGN1-201ENST00000288344 SMCHD1A6NHR9 2005 aa10.85□□□□□ -0.67
HMGN1-201ENST00000288344 ZNF213O14771 459 aa10.84□□□□□ -0.67
HMGN1-201ENST00000288344 TSPY3P0CV98 308 aa10.84□□□□□ -0.67
HMGN1-201ENST00000288344 TSPY8P0CW00 308 aa10.84□□□□□ -0.67
HMGN1-201ENST00000288344 FLT3LGP49771 235 aa10.84□□□□□ -0.67
HMGN1-201ENST00000288344 FCGRTP55899 365 aa10.84□□□□□ -0.67
HMGN1-201ENST00000288344 IRX3P78415 501 aaPredicted RBP10.84□□□□□ -0.67
HMGN1-201ENST00000288344 PRKCZQ05513 592 aa10.84□□□□□ -0.67
HMGN1-201ENST00000288344 TMEM132BQ14DG7 1078 aa10.84□□□□□ -0.67
HMGN1-201ENST00000288344 MFSD6Q6ZSS7 791 aa10.84□□□□□ -0.67
HMGN1-201ENST00000288344 STOX1Q6ZVD7 989 aa10.84□□□□□ -0.67
HMGN1-201ENST00000288344 ATG4CQ96DT6 458 aa10.84□□□□□ -0.67
HMGN1-201ENST00000288344 GMCL1Q96IK5 515 aa10.84□□□□□ -0.67
HMGN1-201ENST00000288344 NUP88Q99567 741 aaPredicted RBP10.84□□□□□ -0.67
HMGN1-201ENST00000288344 SH2D4AQ9H788 454 aa10.84□□□□□ -0.67
HMGN1-201ENST00000288344 ZNF214Q9UL59 606 aaPredicted RBP10.84□□□□□ -0.67
HMGN1-201ENST00000288344 PPP1R9AQ9ULJ8 1098 aa10.84□□□□□ -0.67
HMGN1-201ENST00000288344 COL11A1P12107 1806 aaPredicted RBP10.84□□□□□ -0.67
HMGN1-201ENST00000288344 VWA5AO00534 786 aa10.84□□□□□ -0.67
HMGN1-201ENST00000288344 ATP2A1O14983 1001 aa10.84□□□□□ -0.67
HMGN1-201ENST00000288344 RANBP6O60518 1105 aaKnown RBP10.84□□□□□ -0.67
HMGN1-201ENST00000288344 ARHGEF6Q15052 776 aa10.84□□□□□ -0.67
HMGN1-201ENST00000288344 SEC23AQ15436 765 aa10.84□□□□□ -0.67
HMGN1-201ENST00000288344 FAM83BQ5T0W9 1011 aa10.84□□□□□ -0.67
HMGN1-201ENST00000288344 BTNL9Q6UXG8 535 aa10.84□□□□□ -0.67
HMGN1-201ENST00000288344 DGKHQ86XP1 1220 aa10.84□□□□□ -0.67
HMGN1-201ENST00000288344 GPIHBP1Q8IV16 184 aa10.84□□□□□ -0.67
HMGN1-201ENST00000288344 OXER1Q8TDS5 423 aa10.84□□□□□ -0.67
HMGN1-201ENST00000288344 PXYLP1Q8TE99 480 aa10.84□□□□□ -0.67
HMGN1-201ENST00000288344 RUFY2Q8WXA3 655 aa10.84□□□□□ -0.67
HMGN1-201ENST00000288344 KCNB2Q92953 911 aa10.84□□□□□ -0.67
HMGN1-201ENST00000288344 TMEM47Q9BQJ4 181 aa10.84□□□□□ -0.67
HMGN1-201ENST00000288344 MOV10L1Q9BXT6 1211 aaKnown RBP10.84□□□□□ -0.67
HMGN1-201ENST00000288344 GOPCQ9HD26 462 aa10.84□□□□□ -0.67
HMGN1-201ENST00000288344 CTNNA3Q9UI47 895 aa10.84□□□□□ -0.67
HMGN1-201ENST00000288344 ZNFX1Q9P2E3 1918 aaKnown RBP10.83□□□□□ -0.67
HMGN1-201ENST00000288344 TSPY2A6NKD2 308 aa10.83□□□□□ -0.68
HMGN1-201ENST00000288344 GPR37O15354 613 aa10.83□□□□□ -0.68
HMGN1-201ENST00000288344 ST18O60284 1047 aa10.83□□□□□ -0.68
HMGN1-201ENST00000288344 FMNL1O95466 1100 aaPredicted RBP10.83□□□□□ -0.68
HMGN1-201ENST00000288344 HOXC6P09630 235 aa10.83□□□□□ -0.68
HMGN1-201ENST00000288344 XRCC5P13010 732 aaKnown RBP10.83□□□□□ -0.68
HMGN1-201ENST00000288344 HOXD10P28358 340 aa10.83□□□□□ -0.68
HMGN1-201ENST00000288344 KIF22Q14807 665 aa10.83□□□□□ -0.68
HMGN1-201ENST00000288344 SLFN13Q68D06 897 aa10.83□□□□□ -0.68
HMGN1-201ENST00000288344 CYB5R4Q7L1T6 521 aa10.83□□□□□ -0.68
HMGN1-201ENST00000288344 RASGRP2Q7LDG7 609 aa10.83□□□□□ -0.68
HMGN1-201ENST00000288344 LRRC47Q8N1G4 583 aaKnown RBP10.83□□□□□ -0.68
HMGN1-201ENST00000288344 MB21D1Q8N884 522 aa10.83□□□□□ -0.68
HMGN1-201ENST00000288344 SHCBP1Q8NEM2 672 aa10.83□□□□□ -0.68
HMGN1-201ENST00000288344 SPATC1LQ9H0A9 340 aa10.83□□□□□ -0.68
HMGN1-201ENST00000288344 RNF41Q9H4P4 317 aaPredicted RBP10.83□□□□□ -0.68
HMGN1-201ENST00000288344 SLC38A10Q9HBR0 1119 aa10.83□□□□□ -0.68
HMGN1-201ENST00000288344 ZNF536O15090 1300 aa10.82□□□□□ -0.68
HMGN1-201ENST00000288344 RBBP6Q7Z6E9 1792 aaKnown RBP10.82□□□□□ -0.68
HMGN1-201ENST00000288344 B4E1Z4 1266 aa10.82□□□□□ -0.68
HMGN1-201ENST00000288344 FLOT1O75955 427 aa10.82□□□□□ -0.68
HMGN1-201ENST00000288344 CENPBP07199 599 aaPredicted RBP10.82□□□□□ -0.68
HMGN1-201ENST00000288344 TOP1P11387 765 aaKnown RBP10.82□□□□□ -0.68
HMGN1-201ENST00000288344 PTPREP23469 700 aa10.82□□□□□ -0.68
HMGN1-201ENST00000288344 MAPK4P31152 587 aa10.82□□□□□ -0.68
HMGN1-201ENST00000288344 ANTXR2P58335 489 aa10.82□□□□□ -0.68
HMGN1-201ENST00000288344 GRB14Q14449 540 aa10.82□□□□□ -0.68
HMGN1-201ENST00000288344 IMMTQ16891 758 aaKnown RBP10.82□□□□□ -0.68
HMGN1-201ENST00000288344 TSGA10IPQ3SY00 556 aa10.82□□□□□ -0.68
HMGN1-201ENST00000288344 MAP3K21Q5TCX8 1036 aa10.82□□□□□ -0.68
HMGN1-201ENST00000288344 GPR142Q7Z601 462 aa10.82□□□□□ -0.68
HMGN1-201ENST00000288344 ENAHQ8N8S7 591 aaPredicted RBP10.82□□□□□ -0.68
HMGN1-201ENST00000288344 PRPF38AQ8NAV1 312 aaKnown RBP10.82□□□□□ -0.68
HMGN1-201ENST00000288344 RIPK3Q9Y572 518 aa10.82□□□□□ -0.68
HMGN1-201ENST00000288344 RBM8AQ9Y5S9 174 aaKnown RBP10.82□□□□□ -0.68
HMGN1-201ENST00000288344 E7EWF7 191 aa10.81□□□□□ -0.68
HMGN1-201ENST00000288344 TNPO2O14787 897 aaKnown RBP10.81□□□□□ -0.68
HMGN1-201ENST00000288344 KDM4AO75164 1064 aa10.81□□□□□ -0.68
HMGN1-201ENST00000288344 PDHBP11177 359 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms