RNA–Protein interactions for RNA: ENST00000284767.9

PDLIM3-201, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 2,589 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-201ENST00000284767 KIAA0825Q8IV33 1275 aa20.79■□□□□ 0.92
PDLIM3-201ENST00000284767 USP40Q9NVE5 1235 aa20.79■□□□□ 0.92
PDLIM3-201ENST00000284767 URI1O94763 535 aaPredicted RBP20.78■□□□□ 0.92
PDLIM3-201ENST00000284767 CACNB3P54284 484 aa20.78■□□□□ 0.92
PDLIM3-201ENST00000284767 GPKOWQ92917 476 aaPredicted RBP eCLIP20.78■□□□□ 0.92
PDLIM3-201ENST00000284767 MAD2L2Q9UI95 211 aa20.78■□□□□ 0.92
PDLIM3-201ENST00000284767 CLEC10AQ8IUN9 316 aa20.78■□□□□ 0.92
PDLIM3-201ENST00000284767 ELOA2Q8IYF1 753 aaPredicted RBP20.78■□□□□ 0.92
PDLIM3-201ENST00000284767 NFIAQ12857 509 aa20.77■□□□□ 0.92
PDLIM3-201ENST00000284767 PNOCQ13519 176 aa20.77■□□□□ 0.92
PDLIM3-201ENST00000284767 AOC3Q16853 763 aa20.77■□□□□ 0.92
PDLIM3-201ENST00000284767 CERS3Q8IU89 383 aa20.77■□□□□ 0.92
PDLIM3-201ENST00000284767 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.77■□□□□ 0.92
PDLIM3-201ENST00000284767 SCN9AQ15858 1988 aa20.77■□□□□ 0.92
PDLIM3-201ENST00000284767 CUTAO60888 179 aa20.77■□□□□ 0.91
PDLIM3-201ENST00000284767 SCG2P13521 617 aa20.77■□□□□ 0.91
PDLIM3-201ENST00000284767 XBP1P17861 261 aa20.77■□□□□ 0.91
PDLIM3-201ENST00000284767 KRT2P35908 639 aa20.77■□□□□ 0.91
PDLIM3-201ENST00000284767 STYK1Q6J9G0 422 aa20.77■□□□□ 0.91
PDLIM3-201ENST00000284767 APOBEC3HQ6NTF7 200 aaKnown RBP20.77■□□□□ 0.91
PDLIM3-201ENST00000284767 CDC42EP5Q6NZY7 148 aa20.77■□□□□ 0.91
PDLIM3-201ENST00000284767 TMEM139Q8IV31 216 aa20.77■□□□□ 0.91
PDLIM3-201ENST00000284767 CEP95Q96GE4 821 aa20.77■□□□□ 0.91
PDLIM3-201ENST00000284767 PPP2R2CQ9Y2T4 447 aa20.77■□□□□ 0.91
PDLIM3-201ENST00000284767 FANCGO15287 622 aa20.76■□□□□ 0.91
PDLIM3-201ENST00000284767 CYTH3O43739 400 aa20.76■□□□□ 0.91
PDLIM3-201ENST00000284767 RILPL1Q5EBL4 403 aa20.76■□□□□ 0.91
PDLIM3-201ENST00000284767 ANKS1AQ92625 1134 aa20.76■□□□□ 0.91
PDLIM3-201ENST00000284767 CARD6Q9BX69 1037 aa20.76■□□□□ 0.91
PDLIM3-201ENST00000284767 VWA3AA6NCI4 1184 aa20.76■□□□□ 0.91
PDLIM3-201ENST00000284767 ECE2O60344 883 aa20.76■□□□□ 0.91
PDLIM3-201ENST00000284767 KIF5BP33176 963 aa20.76■□□□□ 0.91
PDLIM3-201ENST00000284767 TEX35Q5T0J7 233 aa20.76■□□□□ 0.91
PDLIM3-201ENST00000284767 ZFPM1Q8IX07 1006 aa20.76■□□□□ 0.91
PDLIM3-201ENST00000284767 TCP11L1Q9NUJ3 509 aa20.76■□□□□ 0.91
PDLIM3-201ENST00000284767 ERICH4A6NGS2 130 aa20.75■□□□□ 0.91
PDLIM3-201ENST00000284767 EIF6P56537 245 aaKnown RBP20.75■□□□□ 0.91
PDLIM3-201ENST00000284767 KRBA2Q6ZNG9 492 aa20.75■□□□□ 0.91
PDLIM3-201ENST00000284767 METTL16Q86W50 562 aaKnown RBP20.75■□□□□ 0.91
PDLIM3-201ENST00000284767 FANCLQ9NW38 375 aa20.75■□□□□ 0.91
PDLIM3-201ENST00000284767 TBX2Q13207 712 aaPredicted RBP20.75■□□□□ 0.91
PDLIM3-201ENST00000284767 GRM4Q14833 912 aa20.75■□□□□ 0.91
PDLIM3-201ENST00000284767 PFKFB3Q16875 520 aaPredicted RBP20.75■□□□□ 0.91
PDLIM3-201ENST00000284767 TYW1BQ6NUM6 668 aa20.75■□□□□ 0.91
PDLIM3-201ENST00000284767 PODNQ7Z5L7 613 aa20.75■□□□□ 0.91
PDLIM3-201ENST00000284767 NEDD1Q8NHV4 660 aa20.75■□□□□ 0.91
PDLIM3-201ENST00000284767 SUGT1Q9Y2Z0 365 aa20.75■□□□□ 0.91
PDLIM3-201ENST00000284767 RGPD3A6NKT7 1758 aaPredicted RBP20.74■□□□□ 0.91
PDLIM3-201ENST00000284767 RGPD4Q7Z3J3 1758 aa20.74■□□□□ 0.91
PDLIM3-201ENST00000284767 C21orf2O43822 256 aa20.74■□□□□ 0.91
PDLIM3-201ENST00000284767 KRI1Q8N9T8 703 aaKnown RBP20.74■□□□□ 0.91
PDLIM3-201ENST00000284767 C7orf43Q8WVR3 580 aa20.74■□□□□ 0.91
PDLIM3-201ENST00000284767 TEKT1Q969V4 418 aa20.74■□□□□ 0.91
PDLIM3-201ENST00000284767 HOOK1Q9UJC3 728 aaKnown RBP20.74■□□□□ 0.91
PDLIM3-201ENST00000284767 FBXO2Q9UK22 296 aaPredicted RBP20.74■□□□□ 0.91
PDLIM3-201ENST00000284767 TMEM232C9JQI7 657 aa20.74■□□□□ 0.91
PDLIM3-201ENST00000284767 STX10O60499 249 aa20.74■□□□□ 0.91
PDLIM3-201ENST00000284767 CRKP46108 304 aa20.74■□□□□ 0.91
PDLIM3-201ENST00000284767 NLRP5P59047 1200 aa20.74■□□□□ 0.91
PDLIM3-201ENST00000284767 USP17L2Q6R6M4 530 aa20.74■□□□□ 0.91
PDLIM3-201ENST00000284767 USP49Q70CQ1 688 aa20.74■□□□□ 0.91
PDLIM3-201ENST00000284767 GPR161Q8N6U8 529 aaKnown RBP20.74■□□□□ 0.91
PDLIM3-201ENST00000284767 CNNM3Q8NE01 707 aa20.74■□□□□ 0.91
PDLIM3-201ENST00000284767 TNFRSF25Q93038 417 aa20.74■□□□□ 0.91
PDLIM3-201ENST00000284767 BAG1Q99933 345 aaPredicted RBP20.74■□□□□ 0.91
PDLIM3-201ENST00000284767 ZNF287Q9HBT7 754 aa20.74■□□□□ 0.91
PDLIM3-201ENST00000284767 ZKSCAN7Q9P0L1 754 aaPredicted RBP20.74■□□□□ 0.91
PDLIM3-201ENST00000284767 FOCADQ5VW36 1801 aa20.73■□□□□ 0.91
PDLIM3-201ENST00000284767 AKR1B1P15121 316 aa20.73■□□□□ 0.91
PDLIM3-201ENST00000284767 CASQ1P31415 396 aa20.73■□□□□ 0.91
PDLIM3-201ENST00000284767 MAP3K9P80192 1104 aa20.73■□□□□ 0.91
PDLIM3-201ENST00000284767 UBXN6Q9BZV1 441 aa20.73■□□□□ 0.91
PDLIM3-201ENST00000284767 KCNH3Q9ULD8 1083 aa20.73■□□□□ 0.91
PDLIM3-201ENST00000284767 RBM5P52756 815 aaKnown RBP eCLIP20.73■□□□□ 0.91
PDLIM3-201ENST00000284767 TCP10Q12799 353 aa20.73■□□□□ 0.91
PDLIM3-201ENST00000284767 RASGRP4Q8TDF6 673 aa20.73■□□□□ 0.91
PDLIM3-201ENST00000284767 INTS13Q9NVM9 706 aa20.73■□□□□ 0.91
PDLIM3-201ENST00000284767 PCDHA5Q9Y5H7 936 aa20.73■□□□□ 0.91
PDLIM3-201ENST00000284767 FAM196BA6NMK8 535 aa20.72■□□□□ 0.91
PDLIM3-201ENST00000284767 GABPAQ06546 454 aa20.72■□□□□ 0.91
PDLIM3-201ENST00000284767 LONRF3Q496Y0 759 aa20.72■□□□□ 0.91
PDLIM3-201ENST00000284767 DACT2Q5SW24 774 aa20.72■□□□□ 0.91
PDLIM3-201ENST00000284767 PIK3AP1Q6ZUJ8 805 aa20.72■□□□□ 0.91
PDLIM3-201ENST00000284767 CNKSR1Q969H4 720 aa20.72■□□□□ 0.91
PDLIM3-201ENST00000284767 QSER1Q2KHR3 1735 aa20.72■□□□□ 0.91
PDLIM3-201ENST00000284767 FOXN1O15353 648 aa20.72■□□□□ 0.91
PDLIM3-201ENST00000284767 ZNF174Q15697 407 aa20.72■□□□□ 0.91
PDLIM3-201ENST00000284767 PTPREP23469 700 aa20.71■□□□□ 0.91
PDLIM3-201ENST00000284767 HHIPL2Q6UWX4 724 aa20.71■□□□□ 0.91
PDLIM3-201ENST00000284767 FOXP4Q8IVH2 680 aaPredicted RBP20.71■□□□□ 0.91
PDLIM3-201ENST00000284767 MRFAP1Q9Y605 127 aa20.71■□□□□ 0.91
PDLIM3-201ENST00000284767 PALM3A6NDB9 673 aaPredicted RBP20.71■□□□□ 0.91
PDLIM3-201ENST00000284767 LRRC47Q8N1G4 583 aaKnown RBP20.71■□□□□ 0.91
PDLIM3-201ENST00000284767 DACH1Q9UI36 760 aa20.71■□□□□ 0.91
PDLIM3-201ENST00000284767 KLRF2D3W0D1 207 aa20.7■□□□□ 0.9
PDLIM3-201ENST00000284767 GNG11P61952 73 aa20.7■□□□□ 0.9
PDLIM3-201ENST00000284767 MDM2Q00987 491 aaPredicted RBP20.7■□□□□ 0.9
PDLIM3-201ENST00000284767 GOLGA8FQ08AF8 430 aa20.7■□□□□ 0.9
PDLIM3-201ENST00000284767 GOLGA8DPQ0D2H9 430 aa20.7■□□□□ 0.9
PDLIM3-201ENST00000284767 SHROOM1Q2M3G4 852 aaPredicted RBP20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 137.9 ms