RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 HOMER1Q86YM7 354 aa16.21■□□□□ 0.19
SS18-201ENST00000269137 ZMYND12Q9H0C1 365 aa16.21■□□□□ 0.19
SS18-201ENST00000269137 GZF1Q9H116 711 aaPredicted RBP16.21■□□□□ 0.19
SS18-201ENST00000269137 GOPCQ9HD26 462 aa16.21■□□□□ 0.19
SS18-201ENST00000269137 ATAD5Q96QE3 1844 aa16.2■□□□□ 0.18
SS18-201ENST00000269137 ESYT2A0FGR8 921 aa16.2■□□□□ 0.18
SS18-201ENST00000269137 ECE1P42892 770 aa16.2■□□□□ 0.18
SS18-201ENST00000269137 TOB1P50616 345 aaPredicted RBP16.2■□□□□ 0.18
SS18-201ENST00000269137 BTNL9Q6UXG8 535 aa16.2■□□□□ 0.18
SS18-201ENST00000269137 BLIDQ8IZY5 108 aa16.2■□□□□ 0.18
SS18-201ENST00000269137 M0R2N6 131 aa16.19■□□□□ 0.18
SS18-201ENST00000269137 SPTLC2O15270 562 aa16.19■□□□□ 0.18
SS18-201ENST00000269137 RAD21O60216 631 aa16.19■□□□□ 0.18
SS18-201ENST00000269137 PTPAQ15257 358 aa16.19■□□□□ 0.18
SS18-201ENST00000269137 SF3A1Q15459 793 aaKnown RBP16.19■□□□□ 0.18
SS18-201ENST00000269137 SUPT20HL1Q3ZLR7 823 aa16.19■□□□□ 0.18
SS18-201ENST00000269137 SYAP1Q96A49 352 aaPredicted RBP16.19■□□□□ 0.18
SS18-201ENST00000269137 VCPKMTQ9H867 229 aa16.19■□□□□ 0.18
SS18-201ENST00000269137 GLTPD2A6NH11 291 aa16.19■□□□□ 0.18
SS18-201ENST00000269137 USP17L10C9JJH3 530 aa16.19■□□□□ 0.18
SS18-201ENST00000269137 ZBTB5O15062 677 aa16.19■□□□□ 0.18
SS18-201ENST00000269137 SLC16A2P36021 539 aa16.19■□□□□ 0.18
SS18-201ENST00000269137 NAPAP54920 295 aa16.19■□□□□ 0.18
SS18-201ENST00000269137 PPP1R18Q6NYC8 613 aa16.19■□□□□ 0.18
SS18-201ENST00000269137 USP50Q70EL3 339 aaPredicted RBP16.19■□□□□ 0.18
SS18-201ENST00000269137 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.19■□□□□ 0.18
SS18-201ENST00000269137 TMEM63CQ9P1W3 806 aa16.19■□□□□ 0.18
SS18-201ENST00000269137 MORC2Q9Y6X9 1032 aaPredicted RBP16.19■□□□□ 0.18
SS18-201ENST00000269137 PPP6R2O75170 966 aa16.18■□□□□ 0.18
SS18-201ENST00000269137 GNA11P29992 359 aa16.18■□□□□ 0.18
SS18-201ENST00000269137 ME1P48163 572 aa16.18■□□□□ 0.18
SS18-201ENST00000269137 TRAPPC10P48553 1259 aa16.18■□□□□ 0.18
SS18-201ENST00000269137 ADALQ6DHV7 355 aa16.18■□□□□ 0.18
SS18-201ENST00000269137 ZC3H15Q8WU90 426 aaKnown RBP16.18■□□□□ 0.18
SS18-201ENST00000269137 DCPSQ96C86 337 aaKnown RBP16.18■□□□□ 0.18
SS18-201ENST00000269137 C6orf50Q9HD87 102 aa16.18■□□□□ 0.18
SS18-201ENST00000269137 NOL7Q9UMY1 257 aaKnown RBP16.18■□□□□ 0.18
SS18-201ENST00000269137 PCDHA7Q9UN72 937 aa16.18■□□□□ 0.18
SS18-201ENST00000269137 A0A1W2PQ27 194 aa16.17■□□□□ 0.18
SS18-201ENST00000269137 A0A1W2PQ64 194 aa16.17■□□□□ 0.18
SS18-201ENST00000269137 A0A1W2PQD8 194 aa16.17■□□□□ 0.18
SS18-201ENST00000269137 TMEM232C9JQI7 657 aa16.17■□□□□ 0.18
SS18-201ENST00000269137 PLA2G6O60733 806 aa16.17■□□□□ 0.18
SS18-201ENST00000269137 INPP5BP32019 993 aa16.17■□□□□ 0.18
SS18-201ENST00000269137 EARS2Q5JPH6 523 aaKnown RBP16.17■□□□□ 0.18
SS18-201ENST00000269137 KIAA1755Q5JYT7 1200 aa16.17■□□□□ 0.18
SS18-201ENST00000269137 SYDE2Q5VT97 1194 aa16.17■□□□□ 0.18
SS18-201ENST00000269137 PRAMEF18Q5VWM3 479 aa16.17■□□□□ 0.18
SS18-201ENST00000269137 JMYQ8N9B5 988 aa16.17■□□□□ 0.18
SS18-201ENST00000269137 NUP88Q99567 741 aaPredicted RBP16.17■□□□□ 0.18
SS18-201ENST00000269137 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.17■□□□□ 0.18
SS18-201ENST00000269137 ISY1Q9ULR0 285 aaKnown RBP16.17■□□□□ 0.18
SS18-201ENST00000269137 SMCO2A6NFE2 343 aa16.17■□□□□ 0.18
SS18-201ENST00000269137 ZSCAN23Q3MJ62 389 aa16.17■□□□□ 0.18
SS18-201ENST00000269137 SCYL3Q8IZE3 742 aa16.17■□□□□ 0.18
SS18-201ENST00000269137 BICD2Q8TD16 824 aa16.17■□□□□ 0.18
SS18-201ENST00000269137 KIAA1683Q9H0B3 1180 aa16.17■□□□□ 0.18
SS18-201ENST00000269137 CEP131Q9UPN4 1083 aa16.17■□□□□ 0.18
SS18-201ENST00000269137 DOCK1Q14185 1865 aa16.16■□□□□ 0.18
SS18-201ENST00000269137 FAM205CA6NFA0 338 aa16.16■□□□□ 0.18
SS18-201ENST00000269137 TRIM75PA6NK02 468 aa16.16■□□□□ 0.18
SS18-201ENST00000269137 ADAMTS3O15072 1205 aa16.16■□□□□ 0.18
SS18-201ENST00000269137 PPP1R11O60927 126 aaPredicted RBP16.16■□□□□ 0.18
SS18-201ENST00000269137 EPHX2P34913 555 aa16.16■□□□□ 0.18
SS18-201ENST00000269137 SULF1Q8IWU6 871 aa16.16■□□□□ 0.18
SS18-201ENST00000269137 SPICE1Q8N0Z3 855 aa16.16■□□□□ 0.18
SS18-201ENST00000269137 KLRG1Q96E93 195 aa16.16■□□□□ 0.18
SS18-201ENST00000269137 WDR18Q9BV38 432 aa16.16■□□□□ 0.18
SS18-201ENST00000269137 GLIS2Q9BZE0 524 aaPredicted RBP16.16■□□□□ 0.18
SS18-201ENST00000269137 PCDHA6Q9UN73 950 aa16.16■□□□□ 0.18
SS18-201ENST00000269137 PCDHA8Q9Y5H6 950 aa16.16■□□□□ 0.18
SS18-201ENST00000269137 SSC5DA1L4H1 1573 aa16.16■□□□□ 0.18
SS18-201ENST00000269137 SCN4AP35499 1836 aa16.16■□□□□ 0.18
SS18-201ENST00000269137 BMP15O95972 392 aa16.15■□□□□ 0.18
SS18-201ENST00000269137 LIG1P18858 919 aa16.15■□□□□ 0.18
SS18-201ENST00000269137 STAT2P52630 851 aa16.15■□□□□ 0.18
SS18-201ENST00000269137 ZNF445P59923 1031 aa16.15■□□□□ 0.18
SS18-201ENST00000269137 CDC37Q16543 378 aaPredicted RBP16.15■□□□□ 0.18
SS18-201ENST00000269137 QRICH1Q2TAL8 776 aa16.15■□□□□ 0.18
SS18-201ENST00000269137 AXDND1Q5T1B0 1012 aaPredicted RBP16.15■□□□□ 0.18
SS18-201ENST00000269137 CCDC183Q5T5S1 534 aa16.15■□□□□ 0.18
SS18-201ENST00000269137 PIK3AP1Q6ZUJ8 805 aa16.15■□□□□ 0.18
SS18-201ENST00000269137 CHURC1Q8WUH1 139 aa16.15■□□□□ 0.18
SS18-201ENST00000269137 LPAR1Q92633 364 aa16.15■□□□□ 0.18
SS18-201ENST00000269137 COA7Q96BR5 231 aa16.15■□□□□ 0.18
SS18-201ENST00000269137 WRNIP1Q96S55 665 aa16.15■□□□□ 0.18
SS18-201ENST00000269137 PCDHB6Q9Y5E3 794 aa16.15■□□□□ 0.18
SS18-201ENST00000269137 IQCA1LA6NCM1 817 aa16.15■□□□□ 0.18
SS18-201ENST00000269137 NOM1Q5C9Z4 860 aaKnown RBP16.15■□□□□ 0.18
SS18-201ENST00000269137 NOL9Q5SY16 702 aaKnown RBP16.15■□□□□ 0.18
SS18-201ENST00000269137 FAM83BQ5T0W9 1011 aa16.15■□□□□ 0.18
SS18-201ENST00000269137 CCDC84Q86UT8 332 aaPredicted RBP16.15■□□□□ 0.18
SS18-201ENST00000269137 CCAR1Q8IX12 1150 aaKnown RBP16.15■□□□□ 0.18
SS18-201ENST00000269137 FEZ1Q99689 392 aa16.15■□□□□ 0.18
SS18-201ENST00000269137 PICK1Q9NRD5 415 aa16.15■□□□□ 0.18
SS18-201ENST00000269137 CCDC194A0A1B0GVG4 234 aa16.14■□□□□ 0.17
SS18-201ENST00000269137 ADCY7P51828 1080 aa16.14■□□□□ 0.17
SS18-201ENST00000269137 IKQ13123 557 aaPredicted RBP16.14■□□□□ 0.17
SS18-201ENST00000269137 TPRNQ4KMQ1 711 aa16.14■□□□□ 0.17
SS18-201ENST00000269137 TTC38Q5R3I4 469 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms