RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 CABP7Q86V35 215 aa13.07□□□□□ -0.32
VPS4A-201ENST00000254950 SRBD1Q8N5C6 995 aaKnown RBP13.07□□□□□ -0.32
VPS4A-201ENST00000254950 IREB2P48200 963 aaKnown RBP13.07□□□□□ -0.32
VPS4A-201ENST00000254950 PABPC4Q13310 644 aaKnown RBP eCLIP13.07□□□□□ -0.321e-7■■□□□ 13.9
VPS4A-201ENST00000254950 FAM43AQ8N2R8 423 aa13.07□□□□□ -0.32
VPS4A-201ENST00000254950 STAG2Q8N3U4 1231 aa13.07□□□□□ -0.32
VPS4A-201ENST00000254950 ZNF592Q92610 1267 aa13.07□□□□□ -0.32
VPS4A-201ENST00000254950 WRNIP1Q96S55 665 aa13.07□□□□□ -0.32
VPS4A-201ENST00000254950 NYAP2Q9P242 653 aa13.07□□□□□ -0.32
VPS4A-201ENST00000254950 STK24Q9Y6E0 443 aa13.07□□□□□ -0.32
VPS4A-201ENST00000254950 CRYBG1Q9Y4K1 1723 aa13.07□□□□□ -0.32
VPS4A-201ENST00000254950 GAKO14976 1311 aa13.07□□□□□ -0.32
VPS4A-201ENST00000254950 SPDYE2BA6NHP3 402 aa13.07□□□□□ -0.32
VPS4A-201ENST00000254950 SPDYE6P0CI01 402 aa13.07□□□□□ -0.32
VPS4A-201ENST00000254950 MMP14P50281 582 aa13.07□□□□□ -0.32
VPS4A-201ENST00000254950 SPAG1Q07617 926 aa13.07□□□□□ -0.32
VPS4A-201ENST00000254950 GRIK5Q16478 980 aa13.07□□□□□ -0.32
VPS4A-201ENST00000254950 FBXL16Q8N461 479 aa13.07□□□□□ -0.32
VPS4A-201ENST00000254950 IL17RAQ96F46 866 aa13.07□□□□□ -0.32
VPS4A-201ENST00000254950 SPZ1Q9BXG8 430 aa13.07□□□□□ -0.32
VPS4A-201ENST00000254950 ZBTB5O15062 677 aa13.07□□□□□ -0.32
VPS4A-201ENST00000254950 MYCLP12524 364 aaPredicted RBP13.07□□□□□ -0.32
VPS4A-201ENST00000254950 SFPQP23246 707 aaKnown RBP eCLIP13.07□□□□□ -0.32
VPS4A-201ENST00000254950 FKBP15Q5T1M5 1219 aa13.07□□□□□ -0.32
VPS4A-201ENST00000254950 FAM114A1Q8IWE2 563 aa13.07□□□□□ -0.32
VPS4A-201ENST00000254950 MAP3K14Q99558 947 aa13.07□□□□□ -0.32
VPS4A-201ENST00000254950 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.07□□□□□ -0.32
VPS4A-201ENST00000254950 LAD1O00515 517 aa13.06□□□□□ -0.32
VPS4A-201ENST00000254950 MTIF2P46199 727 aaKnown RBP13.06□□□□□ -0.32
VPS4A-201ENST00000254950 TROAPQ12815 778 aa13.06□□□□□ -0.32
VPS4A-201ENST00000254950 POSTNQ15063 836 aa13.06□□□□□ -0.32
VPS4A-201ENST00000254950 WWC2Q6AWC2 1192 aa13.06□□□□□ -0.32
VPS4A-201ENST00000254950 GADL1Q6ZQY3 521 aa13.06□□□□□ -0.32
VPS4A-201ENST00000254950 TBCKQ8TEA7 893 aa13.06□□□□□ -0.32
VPS4A-201ENST00000254950 PKD2L1Q9P0L9 805 aa13.06□□□□□ -0.32
VPS4A-201ENST00000254950 CTDNEP1O95476 244 aa13.06□□□□□ -0.32
VPS4A-201ENST00000254950 ARMC9Q7Z3E5 817 aa13.06□□□□□ -0.32
VPS4A-201ENST00000254950 RBSNQ9H1K0 784 aa13.06□□□□□ -0.32
VPS4A-201ENST00000254950 SERTAD1Q9UHV2 236 aa13.06□□□□□ -0.32
VPS4A-201ENST00000254950 CCP110O43303 1012 aa13.06□□□□□ -0.32
VPS4A-201ENST00000254950 LONP1P36776 959 aaKnown RBP13.06□□□□□ -0.32
VPS4A-201ENST00000254950 NDUFA8P51970 172 aa13.06□□□□□ -0.32
VPS4A-201ENST00000254950 EVCP57679 992 aa13.06□□□□□ -0.32
VPS4A-201ENST00000254950 NCAPH2Q6IBW4 605 aa13.06□□□□□ -0.32
VPS4A-201ENST00000254950 CLEC10AQ8IUN9 316 aa13.06□□□□□ -0.32
VPS4A-201ENST00000254950 PCDHA12Q9UN75 941 aa13.06□□□□□ -0.32
VPS4A-201ENST00000254950 GCFC2P16383 781 aaKnown RBP13.05□□□□□ -0.32
VPS4A-201ENST00000254950 GRM1Q13255 1194 aa13.05□□□□□ -0.32
VPS4A-201ENST00000254950 DDX25Q9UHL0 483 aaKnown RBP13.05□□□□□ -0.32
VPS4A-201ENST00000254950 PCDHB6Q9Y5E3 794 aa13.05□□□□□ -0.32
VPS4A-201ENST00000254950 ITGB4P16144 1822 aa13.05□□□□□ -0.32
VPS4A-201ENST00000254950 GUCY1A2P33402 732 aa13.05□□□□□ -0.32
VPS4A-201ENST00000254950 ZNF543Q08ER8 600 aa13.05□□□□□ -0.32
VPS4A-201ENST00000254950 SEC23AQ15436 765 aa13.05□□□□□ -0.32
VPS4A-201ENST00000254950 LUZP1Q86V48 1076 aa13.05□□□□□ -0.32
VPS4A-201ENST00000254950 MRIQ9BWK5 157 aa13.05□□□□□ -0.32
VPS4A-201ENST00000254950 KCNQ5Q9NR82 932 aa13.05□□□□□ -0.32
VPS4A-201ENST00000254950 GLI3P10071 1580 aa13.05□□□□□ -0.32
VPS4A-201ENST00000254950 KLRG2A4D1S0 409 aaPredicted RBP13.05□□□□□ -0.32
VPS4A-201ENST00000254950 ESPNB1AK53 854 aa13.05□□□□□ -0.32
VPS4A-201ENST00000254950 CHMP2AO43633 222 aa13.05□□□□□ -0.32
VPS4A-201ENST00000254950 FDPSP14324 419 aaKnown RBP13.05□□□□□ -0.32
VPS4A-201ENST00000254950 MYL5Q02045 173 aa13.05□□□□□ -0.32
VPS4A-201ENST00000254950 PRR16Q569H4 304 aa13.05□□□□□ -0.32
VPS4A-201ENST00000254950 FAM83BQ5T0W9 1011 aa13.05□□□□□ -0.32
VPS4A-201ENST00000254950 SAMD7Q7Z3H4 446 aa13.05□□□□□ -0.32
VPS4A-201ENST00000254950 CERS5Q8N5B7 392 aa13.05□□□□□ -0.32
VPS4A-201ENST00000254950 SMCR8Q8TEV9 937 aaPredicted RBP13.05□□□□□ -0.32
VPS4A-201ENST00000254950 EHD4Q9H223 541 aa13.05□□□□□ -0.32
VPS4A-201ENST00000254950 BARHL2Q9NY43 387 aa13.05□□□□□ -0.32
VPS4A-201ENST00000254950 KIAA1468Q9P260 1216 aa13.05□□□□□ -0.32
VPS4A-201ENST00000254950 USP17L10C9JJH3 530 aa13.04□□□□□ -0.32
VPS4A-201ENST00000254950 CCDC40Q4G0X9 1142 aa13.04□□□□□ -0.32
VPS4A-201ENST00000254950 APOBEC3HQ6NTF7 200 aaKnown RBP13.04□□□□□ -0.32
VPS4A-201ENST00000254950 FAM177A1Q8N128 213 aaPredicted RBP13.04□□□□□ -0.32
VPS4A-201ENST00000254950 MLKLQ8NB16 471 aa13.04□□□□□ -0.32
VPS4A-201ENST00000254950 TMEM39BQ9GZU3 492 aa13.04□□□□□ -0.32
VPS4A-201ENST00000254950 GRIN3BO60391 1043 aa13.04□□□□□ -0.32
VPS4A-201ENST00000254950 PRKCSHP14314 528 aaPredicted RBP13.04□□□□□ -0.32
VPS4A-201ENST00000254950 TECP42680 631 aa13.04□□□□□ -0.32
VPS4A-201ENST00000254950 CCDC65Q8IXS2 484 aa13.04□□□□□ -0.32
VPS4A-201ENST00000254950 PAGR1Q9BTK6 254 aa13.04□□□□□ -0.32
VPS4A-201ENST00000254950 IVNS1ABPQ9Y6Y0 642 aa13.04□□□□□ -0.32
VPS4A-201ENST00000254950 PPP1R2P41236 205 aa13.04□□□□□ -0.32
VPS4A-201ENST00000254950 UBASH3AP57075 661 aa13.04□□□□□ -0.32
VPS4A-201ENST00000254950 RASSF7Q02833 373 aa13.04□□□□□ -0.32
VPS4A-201ENST00000254950 PPP1R18Q6NYC8 613 aa13.04□□□□□ -0.32
VPS4A-201ENST00000254950 KRBA2Q6ZNG9 492 aa13.04□□□□□ -0.32
VPS4A-201ENST00000254950 ZSCAN30Q86W11 494 aa13.04□□□□□ -0.32
VPS4A-201ENST00000254950 SLFN12Q8IYM2 578 aa13.04□□□□□ -0.32
VPS4A-201ENST00000254950 OXER1Q8TDS5 423 aa13.04□□□□□ -0.32
VPS4A-201ENST00000254950 CEP89Q96ST8 783 aa13.04□□□□□ -0.32
VPS4A-201ENST00000254950 NUP88Q99567 741 aaPredicted RBP13.04□□□□□ -0.32
VPS4A-201ENST00000254950 CSRNP2Q9H175 543 aa13.04□□□□□ -0.32
VPS4A-201ENST00000254950 AK9Q5TCS8 1911 aa13.04□□□□□ -0.32
VPS4A-201ENST00000254950 IQCA1LA6NCM1 817 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 N4BP3O15049 544 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 RHBDL3P58872 404 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 NLRP12P59046 1061 aa13.03□□□□□ -0.32
VPS4A-201ENST00000254950 SPP2Q13103 211 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms