RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 TBC1D10CQ8IV04 446 aa9.99□□□□□ -0.81
VPS4B-201ENST00000238497 USP28Q96RU2 1077 aa9.99□□□□□ -0.81
VPS4B-201ENST00000238497 TMEM106CQ9BVX2 250 aa9.99□□□□□ -0.81
VPS4B-201ENST00000238497 HOXD10P28358 340 aa9.99□□□□□ -0.81
VPS4B-201ENST00000238497 BACE1P56817 501 aa9.99□□□□□ -0.81
VPS4B-201ENST00000238497 SEPT2Q15019 361 aa9.99□□□□□ -0.81
VPS4B-201ENST00000238497 UBE3CQ15386 1083 aa9.99□□□□□ -0.81
VPS4B-201ENST00000238497 CPLX2Q6PUV4 134 aaKnown RBP9.99□□□□□ -0.81
VPS4B-201ENST00000238497 MFSD6Q6ZSS7 791 aa9.99□□□□□ -0.81
VPS4B-201ENST00000238497 CFHR5Q9BXR6 569 aa9.99□□□□□ -0.81
VPS4B-201ENST00000238497 AGTPBP1Q9UPW5 1226 aa9.99□□□□□ -0.81
VPS4B-201ENST00000238497 PTPN22Q9Y2R2 807 aa9.99□□□□□ -0.81
VPS4B-201ENST00000238497 GOLGA8AA7E2F4 631 aa9.98□□□□□ -0.81
VPS4B-201ENST00000238497 CCDC192P0DO97 292 aa9.98□□□□□ -0.81
VPS4B-201ENST00000238497 MAP3K10Q02779 954 aa9.98□□□□□ -0.81
VPS4B-201ENST00000238497 NOM1Q5C9Z4 860 aaKnown RBP9.98□□□□□ -0.81
VPS4B-201ENST00000238497 GPAT2Q6NUI2 795 aa9.98□□□□□ -0.81
VPS4B-201ENST00000238497 CYB5R4Q7L1T6 521 aa9.98□□□□□ -0.81
VPS4B-201ENST00000238497 NBPF11Q86T75 865 aa9.98□□□□□ -0.81
VPS4B-201ENST00000238497 NACAP1Q9BZK3 213 aa9.98□□□□□ -0.81
VPS4B-201ENST00000238497 MKNK2Q9HBH9 465 aa9.98□□□□□ -0.81
VPS4B-201ENST00000238497 SLC12A7Q9Y666 1083 aa9.98□□□□□ -0.81
VPS4B-201ENST00000238497 TCRBV5S4A2TA0A5A2 114 aa9.98□□□□□ -0.81
VPS4B-201ENST00000238497 PEX10O60683 326 aa9.98□□□□□ -0.81
VPS4B-201ENST00000238497 CTDNEP1O95476 244 aa9.98□□□□□ -0.81
VPS4B-201ENST00000238497 CAP1Q01518 475 aa9.98□□□□□ -0.81
VPS4B-201ENST00000238497 TRIM29Q14134 588 aa9.98□□□□□ -0.81
VPS4B-201ENST00000238497 SPECC1Q5M775 1068 aa9.98□□□□□ -0.81
VPS4B-201ENST00000238497 CLEC10AQ8IUN9 316 aa9.98□□□□□ -0.81
VPS4B-201ENST00000238497 IFNL3Q8IZI9 196 aa9.98□□□□□ -0.81
VPS4B-201ENST00000238497 FSIP1Q8NA03 581 aa9.98□□□□□ -0.81
VPS4B-201ENST00000238497 ACER1Q8TDN7 264 aa9.98□□□□□ -0.81
VPS4B-201ENST00000238497 DNAJC25Q9H1X3 360 aa9.98□□□□□ -0.81
VPS4B-201ENST00000238497 CFAP45Q9UL16 551 aa9.98□□□□□ -0.81
VPS4B-201ENST00000238497 R3HCC1Q9Y3T6 440 aaKnown RBP9.98□□□□□ -0.81
VPS4B-201ENST00000238497 PFKFB2O60825 505 aa9.97□□□□□ -0.81
VPS4B-201ENST00000238497 KINO60870 393 aaKnown RBP9.97□□□□□ -0.81
VPS4B-201ENST00000238497 IGSF3O75054 1194 aa9.97□□□□□ -0.81
VPS4B-201ENST00000238497 FCGRTP55899 365 aa9.97□□□□□ -0.81
VPS4B-201ENST00000238497 C17orf99Q6UX52 265 aa9.97□□□□□ -0.81
VPS4B-201ENST00000238497 UBAC1Q9BSL1 405 aa9.97□□□□□ -0.81
VPS4B-201ENST00000238497 ALG1Q9BT22 464 aa9.97□□□□□ -0.81
VPS4B-201ENST00000238497 TRIM5Q9C035 493 aa9.97□□□□□ -0.81
VPS4B-201ENST00000238497 ASCC2Q9H1I8 757 aaPredicted RBP9.97□□□□□ -0.81
VPS4B-201ENST00000238497 OTOFQ9HC10 1997 aa9.97□□□□□ -0.81
VPS4B-201ENST00000238497 MYO5AQ9Y4I1 1855 aaKnown RBP9.97□□□□□ -0.81
VPS4B-201ENST00000238497 BECN2A8MW95 431 aa9.97□□□□□ -0.81
VPS4B-201ENST00000238497 DHX16O60231 1041 aaKnown RBP9.97□□□□□ -0.81
VPS4B-201ENST00000238497 HMGN5P82970 282 aaKnown RBP9.97□□□□□ -0.81
VPS4B-201ENST00000238497 ANO6Q4KMQ2 910 aa9.97□□□□□ -0.81
VPS4B-201ENST00000238497 TRIM47Q96LD4 638 aa9.97□□□□□ -0.81
VPS4B-201ENST00000238497 ATP8A2Q9NTI2 1148 aa9.97□□□□□ -0.81
VPS4B-201ENST00000238497 ZBTB43O43298 467 aa9.97□□□□□ -0.81
VPS4B-201ENST00000238497 SPICE1Q8N0Z3 855 aa9.97□□□□□ -0.81
VPS4B-201ENST00000238497 KCNB2Q92953 911 aa9.97□□□□□ -0.81
VPS4B-201ENST00000238497 ZCCHC17Q9NP64 241 aaKnown RBP9.97□□□□□ -0.81
VPS4B-201ENST00000238497 ZSWIM5Q9P217 1185 aa9.97□□□□□ -0.81
VPS4B-201ENST00000238497 MYPNQ86TC9 1320 aa9.96□□□□□ -0.81
VPS4B-201ENST00000238497 SHMT1P34896 483 aa9.96□□□□□ -0.81
VPS4B-201ENST00000238497 MOGSQ13724 837 aa9.96□□□□□ -0.81
VPS4B-201ENST00000238497 HSP90AA4PQ58FG1 418 aa9.96□□□□□ -0.81
VPS4B-201ENST00000238497 ZSCAN30Q86W11 494 aa9.96□□□□□ -0.81
VPS4B-201ENST00000238497 COA7Q96BR5 231 aa9.96□□□□□ -0.81
VPS4B-201ENST00000238497 PGBD1Q96JS3 809 aa9.96□□□□□ -0.81
VPS4B-201ENST00000238497 PKNOX2Q96KN3 472 aa9.96□□□□□ -0.81
VPS4B-201ENST00000238497 STRBPQ96SI9 672 aaKnown RBP9.96□□□□□ -0.81
VPS4B-201ENST00000238497 P2RX7Q99572 595 aaKnown RBP9.96□□□□□ -0.81
VPS4B-201ENST00000238497 TANGO6Q9C0B7 1094 aa9.96□□□□□ -0.81
VPS4B-201ENST00000238497 KCNJ14Q9UNX9 436 aa9.96□□□□□ -0.81
VPS4B-201ENST00000238497 HTTP42858 3142 aa9.96□□□□□ -0.81
VPS4B-201ENST00000238497 EXOSC10Q01780 885 aaKnown RBP9.96□□□□□ -0.82
VPS4B-201ENST00000238497 AKAP17AQ02040 695 aaKnown RBP9.96□□□□□ -0.82
VPS4B-201ENST00000238497 PRKCZQ05513 592 aa9.96□□□□□ -0.82
VPS4B-201ENST00000238497 TMED8Q6PL24 325 aaPredicted RBP9.96□□□□□ -0.82
VPS4B-201ENST00000238497 PROCA1Q8NCQ7 364 aaPredicted RBP9.96□□□□□ -0.82
VPS4B-201ENST00000238497 NEDD4P46934 1319 aa9.96□□□□□ -0.82
VPS4B-201ENST00000238497 C19orf81C9J6K1 198 aa9.95□□□□□ -0.82
VPS4B-201ENST00000238497 GOLGA6L19H0YKK7 550 aa9.95□□□□□ -0.82
VPS4B-201ENST00000238497 ANTXR2P58335 489 aa9.95□□□□□ -0.82
VPS4B-201ENST00000238497 FAM47AQ5JRC9 791 aa9.95□□□□□ -0.82
VPS4B-201ENST00000238497 USP17L2Q6R6M4 530 aa9.95□□□□□ -0.82
VPS4B-201ENST00000238497 CREBRFQ8IUR6 639 aa9.95□□□□□ -0.82
VPS4B-201ENST00000238497 PDILTQ8N807 584 aa9.95□□□□□ -0.82
VPS4B-201ENST00000238497 ZNF396Q96N95 335 aaPredicted RBP9.95□□□□□ -0.82
VPS4B-201ENST00000238497 CLIC4Q9Y696 253 aa9.95□□□□□ -0.82
VPS4B-201ENST00000238497 MKI67P46013 3256 aaKnown RBP9.95□□□□□ -0.82
VPS4B-201ENST00000238497 BAZ2BQ9UIF8 2168 aaKnown RBP9.95□□□□□ -0.82
VPS4B-201ENST00000238497 AKR1B1P15121 316 aa9.95□□□□□ -0.82
VPS4B-201ENST00000238497 CDK8P49336 464 aa9.95□□□□□ -0.82
VPS4B-201ENST00000238497 FLT3LGP49771 235 aa9.95□□□□□ -0.82
VPS4B-201ENST00000238497 ICA1Q05084 483 aa9.95□□□□□ -0.82
VPS4B-201ENST00000238497 TYRO3Q06418 890 aa9.95□□□□□ -0.82
VPS4B-201ENST00000238497 PLS1Q14651 629 aa9.95□□□□□ -0.82
VPS4B-201ENST00000238497 WDR18Q9BV38 432 aa9.95□□□□□ -0.82
VPS4B-201ENST00000238497 EHD4Q9H223 541 aa9.95□□□□□ -0.82
VPS4B-201ENST00000238497 SRRDQ9UH36 339 aa9.95□□□□□ -0.82
VPS4B-201ENST00000238497 FOXP2O15409 715 aa9.95□□□□□ -0.82
VPS4B-201ENST00000238497 ELNP15502 786 aa9.95□□□□□ -0.82
VPS4B-201ENST00000238497 SART3Q15020 963 aaKnown RBP9.95□□□□□ -0.82
VPS4B-201ENST00000238497 TSGA10IPQ3SY00 556 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms