RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 PLEKHG1Q9ULL1 1385 aa16.29■□□□□ 0.2
PTPRA-201ENST00000216877 KRT83P78385 493 aa16.29■□□□□ 0.2
PTPRA-201ENST00000216877 FKBP4Q02790 459 aaKnown RBP eCLIP16.29■□□□□ 0.2
PTPRA-201ENST00000216877 QPCTQ16769 361 aa16.29■□□□□ 0.2
PTPRA-201ENST00000216877 OR8K1Q8NGG5 319 aa16.29■□□□□ 0.2
PTPRA-201ENST00000216877 CABLES1Q8TDN4 633 aa16.29■□□□□ 0.2
PTPRA-201ENST00000216877 DDX17Q92841 729 aaKnown RBP16.29■□□□□ 0.2
PTPRA-201ENST00000216877 NUP58Q9BVL2 599 aa16.29■□□□□ 0.2
PTPRA-201ENST00000216877 LACRTQ9GZZ8 138 aa16.29■□□□□ 0.2
PTPRA-201ENST00000216877 BATF3Q9NR55 127 aa16.29■□□□□ 0.2
PTPRA-201ENST00000216877 ADD3Q9UEY8 706 aaKnown RBP16.29■□□□□ 0.2
PTPRA-201ENST00000216877 EVI5O60447 810 aa16.29■□□□□ 0.2
PTPRA-201ENST00000216877 FAM153BP0C7A2 387 aa16.29■□□□□ 0.2
PTPRA-201ENST00000216877 SKOR1P84550 965 aa16.29■□□□□ 0.2
PTPRA-201ENST00000216877 IMMTQ16891 758 aaKnown RBP16.29■□□□□ 0.2
PTPRA-201ENST00000216877 FAM153CQ494X1 144 aa16.29■□□□□ 0.2
PTPRA-201ENST00000216877 NFRKBQ6P4R8 1299 aa16.29■□□□□ 0.2
PTPRA-201ENST00000216877 ZNF274Q96GC6 653 aaPredicted RBP16.29■□□□□ 0.2
PTPRA-201ENST00000216877 SUCLG2Q96I99 432 aa16.29■□□□□ 0.2
PTPRA-201ENST00000216877 PPP1R12CQ9BZL4 782 aa16.29■□□□□ 0.2
PTPRA-201ENST00000216877 FAM153AQ9UHL3 310 aa16.29■□□□□ 0.2
PTPRA-201ENST00000216877 KLHL7Q8IXQ5 586 aa16.28■□□□□ 0.2
PTPRA-201ENST00000216877 SPATA4Q8NEY3 305 aa16.28■□□□□ 0.2
PTPRA-201ENST00000216877 UBLCP1Q8WVY7 318 aaPredicted RBP16.28■□□□□ 0.2
PTPRA-201ENST00000216877 SLC26A6Q9BXS9 759 aa16.28■□□□□ 0.2
PTPRA-201ENST00000216877 KDRP35968 1356 aa16.28■□□□□ 0.2
PTPRA-201ENST00000216877 GCOM1H8Y6P7 765 aaPredicted RBP16.28■□□□□ 0.2
PTPRA-201ENST00000216877 NCK2O43639 380 aa16.28■□□□□ 0.2
PTPRA-201ENST00000216877 MYZAPP0CAP1 466 aa16.28■□□□□ 0.2
PTPRA-201ENST00000216877 CYLC1P35663 651 aaPredicted RBP16.28■□□□□ 0.2
PTPRA-201ENST00000216877 CHRNA2Q15822 529 aa16.28■□□□□ 0.2
PTPRA-201ENST00000216877 RESP18Q5W5W9 173 aa16.28■□□□□ 0.2
PTPRA-201ENST00000216877 PAPOLBQ9NRJ5 636 aaKnown RBP16.28■□□□□ 0.2
PTPRA-201ENST00000216877 NOP53Q9NZM5 478 aaKnown RBP16.28■□□□□ 0.2
PTPRA-201ENST00000216877 TACC1O75410 805 aa16.28■□□□□ 0.2
PTPRA-201ENST00000216877 KRT31Q15323 416 aa16.28■□□□□ 0.2
PTPRA-201ENST00000216877 ENOX2Q16206 610 aaKnown RBP16.28■□□□□ 0.2
PTPRA-201ENST00000216877 TRIM74Q86UV6 250 aa16.28■□□□□ 0.2
PTPRA-201ENST00000216877 TRIM73Q86UV7 250 aa16.28■□□□□ 0.2
PTPRA-201ENST00000216877 PROCA1Q8NCQ7 364 aaPredicted RBP16.28■□□□□ 0.2
PTPRA-201ENST00000216877 B4GALNT2Q8NHY0 566 aa16.28■□□□□ 0.2
PTPRA-201ENST00000216877 RAPGEF4Q8WZA2 1011 aa16.28■□□□□ 0.2
PTPRA-201ENST00000216877 CCDC51Q96ER9 411 aa16.28■□□□□ 0.2
PTPRA-201ENST00000216877 SELENOSQ9BQE4 189 aa16.28■□□□□ 0.2
PTPRA-201ENST00000216877 PLAAQ9Y263 795 aa16.28■□□□□ 0.2
PTPRA-201ENST00000216877 TLDC2A0PJX2 215 aa16.27■□□□□ 0.2
PTPRA-201ENST00000216877 HEXIM1O94992 359 aaKnown RBP16.27■□□□□ 0.2
PTPRA-201ENST00000216877 TFCP2Q12800 502 aa16.27■□□□□ 0.2
PTPRA-201ENST00000216877 TAF11Q15544 211 aa16.27■□□□□ 0.2
PTPRA-201ENST00000216877 ZC3H12AQ5D1E8 599 aaKnown RBP16.27■□□□□ 0.2
PTPRA-201ENST00000216877 KCNJ14Q9UNX9 436 aa16.27■□□□□ 0.2
PTPRA-201ENST00000216877 LEMD3Q9Y2U8 911 aa16.27■□□□□ 0.2
PTPRA-201ENST00000216877 METAP2P50579 478 aaKnown RBP eCLIP16.27■□□□□ 0.19
PTPRA-201ENST00000216877 PLCB4Q15147 1175 aa16.27■□□□□ 0.19
PTPRA-201ENST00000216877 PTPROQ16827 1216 aa16.27■□□□□ 0.19
PTPRA-201ENST00000216877 IFT20Q8IY31 132 aa16.27■□□□□ 0.19
PTPRA-201ENST00000216877 ANKRD24Q8TF21 1146 aa16.27■□□□□ 0.19
PTPRA-201ENST00000216877 TMEM165Q9HC07 324 aa16.27■□□□□ 0.19
PTPRA-201ENST00000216877 INCENPQ9NQS7 918 aa16.27■□□□□ 0.19
PTPRA-201ENST00000216877 C15orf41Q9Y2V0 281 aa16.27■□□□□ 0.19
PTPRA-201ENST00000216877 LMO7Q8WWI1 1683 aa16.27■□□□□ 0.19
PTPRA-201ENST00000216877 TTC26A0AVF1 554 aa16.27■□□□□ 0.19
PTPRA-201ENST00000216877 CTCFP49711 727 aaPredicted RBP16.27■□□□□ 0.19
PTPRA-201ENST00000216877 ELF3P78545 371 aaPredicted RBP16.27■□□□□ 0.19
PTPRA-201ENST00000216877 EMBQ6PCB8 327 aa16.27■□□□□ 0.19
PTPRA-201ENST00000216877 KRT26Q7Z3Y9 468 aa16.27■□□□□ 0.19
PTPRA-201ENST00000216877 RIC3Q7Z5B4 369 aa16.27■□□□□ 0.19
PTPRA-201ENST00000216877 ATP6V1G3Q96LB4 118 aa16.27■□□□□ 0.19
PTPRA-201ENST00000216877 OSBPL1AQ9BXW6 950 aa16.27■□□□□ 0.19
PTPRA-201ENST00000216877 VIMP08670 466 aaKnown RBP16.26■□□□□ 0.19
PTPRA-201ENST00000216877 ATP5JP18859 108 aa16.26■□□□□ 0.19
PTPRA-201ENST00000216877 PAPOLAP51003 745 aaKnown RBP16.26■□□□□ 0.19
PTPRA-201ENST00000216877 TTF1Q15361 905 aaPredicted RBP16.26■□□□□ 0.19
PTPRA-201ENST00000216877 MED15Q96RN5 788 aa16.26■□□□□ 0.19
PTPRA-201ENST00000216877 NOVA2Q9UNW9 492 aaKnown RBP16.26■□□□□ 0.19
PTPRA-201ENST00000216877 ZNF233A6NK53 670 aa16.26■□□□□ 0.19
PTPRA-201ENST00000216877 BTBD18B2RXH4 712 aa16.26■□□□□ 0.19
PTPRA-201ENST00000216877 UBE2Q2LH0YL09 131 aa16.26■□□□□ 0.19
PTPRA-201ENST00000216877 MOCS3O95396 460 aa16.26■□□□□ 0.19
PTPRA-201ENST00000216877 IARSP41252 1262 aaKnown RBP16.26■□□□□ 0.19
PTPRA-201ENST00000216877 KDM7AQ6ZMT4 941 aa16.26■□□□□ 0.19
PTPRA-201ENST00000216877 YTHDF3Q7Z739 585 aaKnown RBP16.26■□□□□ 0.19
PTPRA-201ENST00000216877 MS4A14Q96JA4 679 aa16.26■□□□□ 0.19
PTPRA-201ENST00000216877 CCDC42Q96M95 316 aa16.26■□□□□ 0.19
PTPRA-201ENST00000216877 MLXIPQ9HAP2 919 aa16.26■□□□□ 0.19
PTPRA-201ENST00000216877 ALS2Q96Q42 1657 aa16.26■□□□□ 0.19
PTPRA-201ENST00000216877 N4BP2Q86UW6 1770 aaPredicted RBP16.26■□□□□ 0.19
PTPRA-201ENST00000216877 USO1O60763 962 aaKnown RBP16.26■□□□□ 0.19
PTPRA-201ENST00000216877 ANKS4BQ8N8V4 417 aa16.26■□□□□ 0.19
PTPRA-201ENST00000216877 PRCCQ92733 491 aaPredicted RBP16.26■□□□□ 0.19
PTPRA-201ENST00000216877 CD44P16070 742 aaKnown RBP16.25■□□□□ 0.19
PTPRA-201ENST00000216877 COPB1P53618 953 aaKnown RBP16.25■□□□□ 0.19
PTPRA-201ENST00000216877 PAK2Q13177 524 aa16.25■□□□□ 0.19
PTPRA-201ENST00000216877 ZNF530Q6P9A1 599 aaPredicted RBP16.25■□□□□ 0.19
PTPRA-201ENST00000216877 TLDC1Q6P9B6 456 aa16.25■□□□□ 0.19
PTPRA-201ENST00000216877 SEC31BQ9NQW1 1179 aa16.25■□□□□ 0.19
PTPRA-201ENST00000216877 LRWD1Q9UFC0 647 aa16.25■□□□□ 0.19
PTPRA-201ENST00000216877 DBNLQ9UJU6 430 aaKnown RBP16.25■□□□□ 0.19
PTPRA-201ENST00000216877 MED23Q9ULK4 1368 aa16.25■□□□□ 0.19
PTPRA-201ENST00000216877 PSMD14O00487 310 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms