RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 EXOC6Q8TAG9 804 aa12.28□□□□□ -0.44
SCN1A-222ENST00000642141 NACAP1Q9BZK3 213 aa12.28□□□□□ -0.44
SCN1A-222ENST00000642141 NBPF3Q9H094 633 aa12.28□□□□□ -0.44
SCN1A-222ENST00000642141 OGDHLQ9ULD0 1010 aa12.28□□□□□ -0.44
SCN1A-222ENST00000642141 ISY1Q9ULR0 285 aaKnown RBP12.28□□□□□ -0.44
SCN1A-222ENST00000642141 NR2E3Q9Y5X4 410 aa12.28□□□□□ -0.44
SCN1A-222ENST00000642141 SALL3Q9BXA9 1300 aa12.28□□□□□ -0.44
SCN1A-222ENST00000642141 F5H6K3 240 aa12.27□□□□□ -0.45
SCN1A-222ENST00000642141 IGHDP01880 384 aa12.27□□□□□ -0.45
SCN1A-222ENST00000642141 MYCNP04198 464 aaPredicted RBP12.27□□□□□ -0.45
SCN1A-222ENST00000642141 PGK2P07205 417 aa12.27□□□□□ -0.45
SCN1A-222ENST00000642141 CTDSPL2Q05D32 466 aa12.27□□□□□ -0.45
SCN1A-222ENST00000642141 KLRC3Q07444 240 aa12.27□□□□□ -0.45
SCN1A-222ENST00000642141 HDAC1Q13547 482 aaPredicted RBP12.27□□□□□ -0.45
SCN1A-222ENST00000642141 VPS53Q5VIR6 699 aa12.27□□□□□ -0.45
SCN1A-222ENST00000642141 LHX8Q68G74 356 aa12.27□□□□□ -0.45
SCN1A-222ENST00000642141 LRRC47Q8N1G4 583 aaKnown RBP12.27□□□□□ -0.45
SCN1A-222ENST00000642141 MB21D1Q8N884 522 aa12.27□□□□□ -0.45
SCN1A-222ENST00000642141 TRPV1Q8NER1 839 aa12.27□□□□□ -0.45
SCN1A-222ENST00000642141 CEP95Q96GE4 821 aa12.27□□□□□ -0.45
SCN1A-222ENST00000642141 NAPBQ9H115 298 aa12.27□□□□□ -0.45
SCN1A-222ENST00000642141 C11orf49Q9H6J7 331 aa12.27□□□□□ -0.45
SCN1A-222ENST00000642141 RBM27Q9P2N5 1060 aaKnown RBP12.27□□□□□ -0.45
SCN1A-222ENST00000642141 ZMYND8Q9ULU4 1186 aaPredicted RBP12.27□□□□□ -0.45
SCN1A-222ENST00000642141 MYH8P13535 1937 aa12.27□□□□□ -0.45
SCN1A-222ENST00000642141 DNAH12Q6ZR08 3092 aa12.26□□□□□ -0.45
SCN1A-222ENST00000642141 CEP290O15078 2479 aa12.26□□□□□ -0.45
SCN1A-222ENST00000642141 VWA5AO00534 786 aa12.26□□□□□ -0.45
SCN1A-222ENST00000642141 FOXP2O15409 715 aa12.26□□□□□ -0.45
SCN1A-222ENST00000642141 NDUFB10O96000 172 aa12.26□□□□□ -0.45
SCN1A-222ENST00000642141 FCER1AP12319 257 aa12.26□□□□□ -0.45
SCN1A-222ENST00000642141 SYN1P17600 705 aa12.26□□□□□ -0.45
SCN1A-222ENST00000642141 TFAP4Q01664 338 aa12.26□□□□□ -0.45
SCN1A-222ENST00000642141 PPARAQ07869 468 aa12.26□□□□□ -0.45
SCN1A-222ENST00000642141 ANKLE1Q8NAG6 615 aa12.26□□□□□ -0.45
SCN1A-222ENST00000642141 FAM227BQ96M60 508 aa12.26□□□□□ -0.45
SCN1A-222ENST00000642141 MROH8Q9H579 483 aa12.26□□□□□ -0.45
SCN1A-222ENST00000642141 NYAP2Q9P242 653 aa12.26□□□□□ -0.45
SCN1A-222ENST00000642141 STAP2Q9UGK3 403 aa12.26□□□□□ -0.45
SCN1A-222ENST00000642141 PPP1R9AQ9ULJ8 1098 aa12.26□□□□□ -0.45
SCN1A-222ENST00000642141 IGKV6D-41A0A0C4DH26 115 aa12.25□□□□□ -0.45
SCN1A-222ENST00000642141 TRIM6-TRIM34B2RNG4 842 aa12.25□□□□□ -0.45
SCN1A-222ENST00000642141 STRNO43815 780 aa12.25□□□□□ -0.45
SCN1A-222ENST00000642141 HOXC6P09630 235 aa12.25□□□□□ -0.45
SCN1A-222ENST00000642141 TSPY3P0CV98 308 aa12.25□□□□□ -0.45
SCN1A-222ENST00000642141 TSPY8P0CW00 308 aa12.25□□□□□ -0.45
SCN1A-222ENST00000642141 STAT3P40763 770 aa12.25□□□□□ -0.45
SCN1A-222ENST00000642141 FXR1P51114 621 aaKnown RBP eCLIP12.25□□□□□ -0.45
SCN1A-222ENST00000642141 PDE4BQ07343 736 aa12.25□□□□□ -0.45
SCN1A-222ENST00000642141 CPXCR1Q8N123 301 aa12.25□□□□□ -0.45
SCN1A-222ENST00000642141 SHCBP1Q8NEM2 672 aa12.25□□□□□ -0.45
SCN1A-222ENST00000642141 RILPL2Q969X0 211 aa12.25□□□□□ -0.45
SCN1A-222ENST00000642141 KIFC2Q96AC6 838 aa12.25□□□□□ -0.45
SCN1A-222ENST00000642141 EVI5LQ96CN4 794 aa12.25□□□□□ -0.45
SCN1A-222ENST00000642141 MMP19Q99542 508 aa12.25□□□□□ -0.45
SCN1A-222ENST00000642141 RWDD1Q9H446 243 aaPredicted RBP12.25□□□□□ -0.45
SCN1A-222ENST00000642141 ZNF287Q9HBT7 754 aa12.25□□□□□ -0.45
SCN1A-222ENST00000642141 MTMR4Q9NYA4 1195 aa12.25□□□□□ -0.45
SCN1A-222ENST00000642141 ADAMTS5Q9UNA0 930 aa12.25□□□□□ -0.45
SCN1A-222ENST00000642141 MTMR7Q9Y216 660 aa12.25□□□□□ -0.45
SCN1A-222ENST00000642141 ROBO3Q96MS0 1386 aa12.25□□□□□ -0.45
SCN1A-222ENST00000642141 A0A0D9SFI3 127 aa12.24□□□□□ -0.45
SCN1A-222ENST00000642141 PFASO15067 1338 aa12.24□□□□□ -0.45
SCN1A-222ENST00000642141 NMT2O60551 498 aa12.24□□□□□ -0.45
SCN1A-222ENST00000642141 SLC3A2P08195 630 aaKnown RBP12.24□□□□□ -0.45
SCN1A-222ENST00000642141 RANBP2P49792 3224 aaKnown RBP12.24□□□□□ -0.45
SCN1A-222ENST00000642141 IRX6P78412 446 aaPredicted RBP12.24□□□□□ -0.45
SCN1A-222ENST00000642141 RLFQ13129 1914 aa12.24□□□□□ -0.45
SCN1A-222ENST00000642141 SLF1Q9BQI6 1058 aa12.24□□□□□ -0.45
SCN1A-222ENST00000642141 SENP6Q9GZR1 1112 aaPredicted RBP12.24□□□□□ -0.45
SCN1A-222ENST00000642141 DDX20Q9UHI6 824 aaKnown RBP12.24□□□□□ -0.45
SCN1A-222ENST00000642141 RIPK3Q9Y572 518 aa12.24□□□□□ -0.45
SCN1A-222ENST00000642141 SUPT16HQ9Y5B9 1047 aaKnown RBP12.24□□□□□ -0.45
SCN1A-222ENST00000642141 TACC3Q9Y6A5 838 aa12.24□□□□□ -0.45
SCN1A-222ENST00000642141 RANBP6O60518 1105 aaKnown RBP12.23□□□□□ -0.45
SCN1A-222ENST00000642141 SLC25A27O95847 323 aa12.23□□□□□ -0.45
SCN1A-222ENST00000642141 TTLL1O95922 423 aa12.23□□□□□ -0.45
SCN1A-222ENST00000642141 ATN1P54259 1190 aaPredicted RBP12.23□□□□□ -0.45
SCN1A-222ENST00000642141 SNAP25P60880 206 aa12.23□□□□□ -0.45
SCN1A-222ENST00000642141 NMIQ13287 307 aaPredicted RBP12.23□□□□□ -0.45
SCN1A-222ENST00000642141 KCTD2Q14681 263 aa12.23□□□□□ -0.45
SCN1A-222ENST00000642141 LRRC26Q2I0M4 334 aa12.23□□□□□ -0.45
SCN1A-222ENST00000642141 GJC2Q5T442 439 aaPredicted RBP12.23□□□□□ -0.45
SCN1A-222ENST00000642141 SLFN13Q68D06 897 aa12.23□□□□□ -0.45
SCN1A-222ENST00000642141 SNRNP48Q6IEG0 339 aaKnown RBP12.23□□□□□ -0.45
SCN1A-222ENST00000642141 RIOX2Q8IUF8 465 aa12.23□□□□□ -0.45
SCN1A-222ENST00000642141 REPS2Q8NFH8 660 aa12.23□□□□□ -0.45
SCN1A-222ENST00000642141 NEDD1Q8NHV4 660 aa12.23□□□□□ -0.45
SCN1A-222ENST00000642141 MAML3Q96JK9 1138 aa12.23□□□□□ -0.45
SCN1A-222ENST00000642141 RAVER2Q9HCJ3 691 aaKnown RBP12.23□□□□□ -0.45
SCN1A-222ENST00000642141 TOMM22Q9NS69 142 aa12.23□□□□□ -0.45
SCN1A-222ENST00000642141 ZNF214Q9UL59 606 aaPredicted RBP12.23□□□□□ -0.45
SCN1A-222ENST00000642141 CTDP1Q9Y5B0 961 aaPredicted RBP12.23□□□□□ -0.45
SCN1A-222ENST00000642141 TSPY2A6NKD2 308 aa12.22□□□□□ -0.45
SCN1A-222ENST00000642141 ZBED4O75132 1171 aa12.22□□□□□ -0.45
SCN1A-222ENST00000642141 CYBAP13498 195 aa12.22□□□□□ -0.45
SCN1A-222ENST00000642141 TAL1P17542 331 aaPredicted RBP12.22□□□□□ -0.45
SCN1A-222ENST00000642141 CAPN2P17655 700 aa12.22□□□□□ -0.45
SCN1A-222ENST00000642141 MCCP23508 829 aa12.22□□□□□ -0.45
SCN1A-222ENST00000642141 HAND2P61296 217 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms