RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 DOLKQ9UPQ8 538 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 LRRIQ4A6NIV6 560 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 SPDYE16A6NNV3 312 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-218ENST00000640036 SMARCA5O60264 1052 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-218ENST00000640036 GPSM2P81274 684 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 SPDYE2Q495Y8 402 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 TDRD12Q587J7 1177 aaKnown RBP5.6□□□□□ -1.51
SCN1A-218ENST00000640036 RRAGBQ5VZM2 374 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 KIAA1328Q86T90 577 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 CNNM3Q8NE01 707 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 N4BP2L2Q92802 583 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-218ENST00000640036 INPP5FQ9Y2H2 1132 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 PPP2R3BQ9Y5P8 575 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 SOS2Q07890 1332 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-218ENST00000640036 NDC80O14777 642 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 MAP3K13O43283 966 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 CCDC157Q569K6 752 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 RGMBQ6NW40 437 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 MAK16Q9BXY0 300 aaKnown RBP5.6□□□□□ -1.51
SCN1A-218ENST00000640036 FAM184BQ9ULE4 1060 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 PDE8BO95263 885 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 GDF11O95390 407 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 PCP11498 1178 aaKnown RBP5.6□□□□□ -1.51
SCN1A-218ENST00000640036 PKN2Q16513 984 aaKnown RBP5.6□□□□□ -1.51
SCN1A-218ENST00000640036 NBPF9Q3BBW0 867 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 MAEAQ7L5Y9 396 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 CEP63Q96MT8 703 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 CCDC113Q9H0I3 377 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 DEFB129Q9H1M3 183 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 MAPK4P31152 587 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 RASSF7Q02833 373 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 FSTL1Q12841 308 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 PLCB4Q15147 1175 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 ENOX2Q16206 610 aaKnown RBP5.6□□□□□ -1.51
SCN1A-218ENST00000640036 XKR9Q5GH70 373 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 CATSPER4Q7RTX7 472 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 LRRC47Q8N1G4 583 aaKnown RBP5.6□□□□□ -1.51
SCN1A-218ENST00000640036 BBS5Q8N3I7 341 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 ZNF280CQ8ND82 737 aa5.6□□□□□ -1.51
SCN1A-218ENST00000640036 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.6□□□□□ -1.51
SCN1A-218ENST00000640036 SMTNL1A8MU46 457 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 F8W8V4 182 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 TRAPPC3O43617 180 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 SLC25A27O95847 323 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 ABCD1P33897 745 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 EIF4A1P60842 406 aaKnown RBP5.59□□□□□ -1.51
SCN1A-218ENST00000640036 ATP8B2P98198 1209 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 PTGDRQ13258 359 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 POLA2Q14181 598 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 MUM1L1Q5H9M0 696 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 NCAPH2Q6IBW4 605 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 PDXDC2PQ6P474 469 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 RNF207Q6ZRF8 634 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 RYBPQ8N488 228 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-218ENST00000640036 MB21D1Q8N884 522 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 TMEM169Q96HH4 297 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 SPAG5Q96R06 1193 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 TEKT3Q9BXF9 490 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 PSTPIP2Q9H939 334 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 CPT1AP50416 773 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 TMEM199Q8N511 208 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 MARCH10Q8NA82 808 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-218ENST00000640036 KIAA1524Q8TCG1 905 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 CACYBPQ9HB71 228 aaKnown RBP5.59□□□□□ -1.51
SCN1A-218ENST00000640036 NEURL1BA8MQ27 555 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 SORBS3O60504 671 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 SOCS4Q8WXH5 440 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 ARHGAP45Q92619 1136 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 KIFAP3Q92845 792 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 GREM2Q9H772 168 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 HESX1Q9UBX0 185 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 MED14O60244 1454 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 ATP7BP35670 1465 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 ESYT2A0FGR8 921 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 ASIC1P78348 528 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 IER5Q5VY09 327 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 SKA1Q96BD8 255 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 CHAMP1Q96JM3 812 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 TMEM87BQ96K49 555 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 MMS19Q96T76 1030 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 CD209Q9NNX6 404 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 RIPOR2Q9Y4F9 1068 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 ADCY10Q96PN6 1610 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 STAT3P40763 770 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 LIG4P49917 911 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 KRT33BQ14525 404 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 COG2Q14746 738 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 FILIP1Q7Z7B0 1213 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 REXO1Q8N1G1 1221 aaKnown RBP5.59□□□□□ -1.51
SCN1A-218ENST00000640036 SEPT9Q9UHD8 586 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-218ENST00000640036 PCDHB7Q9Y5E2 793 aa5.59□□□□□ -1.51
SCN1A-218ENST00000640036 GPAA1O43292 621 aa5.59□□□□□ -1.52
SCN1A-218ENST00000640036 PPFIA3O75145 1194 aa5.59□□□□□ -1.52
SCN1A-218ENST00000640036 FAM193AP78312 1265 aa5.59□□□□□ -1.52
SCN1A-218ENST00000640036 CUL4BQ13620 913 aa5.59□□□□□ -1.52
SCN1A-218ENST00000640036 NEDD9Q14511 834 aa5.59□□□□□ -1.52
SCN1A-218ENST00000640036 DSTYKQ6XUX3 929 aa5.59□□□□□ -1.52
SCN1A-218ENST00000640036 PARD3BQ8TEW8 1205 aa5.59□□□□□ -1.52
SCN1A-218ENST00000640036 CACTINQ8WUQ7 758 aaKnown RBP5.59□□□□□ -1.52
SCN1A-218ENST00000640036 VPS33BQ9H267 617 aa5.59□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms