RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 MINPP1Q9UNW1 487 aa7.42□□□□□ -1.22
CD44-239ENST00000639002 TSPAN15O95858 294 aa7.41□□□□□ -1.22
CD44-239ENST00000639002 C1QTNF9P0C862 333 aa7.41□□□□□ -1.22
CD44-239ENST00000639002 ZNF76P36508 570 aa7.41□□□□□ -1.22
CD44-239ENST00000639002 RNF4P78317 190 aa7.41□□□□□ -1.22
CD44-239ENST00000639002 FBXO15Q8NCQ5 510 aaPredicted RBP7.41□□□□□ -1.22
CD44-239ENST00000639002 DHX38Q92620 1227 aaKnown RBP7.41□□□□□ -1.22
CD44-239ENST00000639002 PRDM14Q9GZV8 571 aa7.41□□□□□ -1.22
CD44-239ENST00000639002 PCDHGB7Q9Y5F8 929 aa7.41□□□□□ -1.22
CD44-239ENST00000639002 TMEM82A0PJX8 343 aa7.4□□□□□ -1.22
CD44-239ENST00000639002 ZBTB7CA1YPR0 619 aa7.4□□□□□ -1.22
CD44-239ENST00000639002 FITM1A5D6W6 292 aa7.4□□□□□ -1.22
CD44-239ENST00000639002 ACRP10323 421 aa7.4□□□□□ -1.22
CD44-239ENST00000639002 CCNFP41002 786 aa7.4□□□□□ -1.22
CD44-239ENST00000639002 RACK1P63244 317 aaKnown RBP7.4□□□□□ -1.22
CD44-239ENST00000639002 C1QL4Q86Z23 238 aa7.4□□□□□ -1.22
CD44-239ENST00000639002 LILRA2Q8N149 483 aa7.4□□□□□ -1.22
CD44-239ENST00000639002 OXR1Q8N573 874 aa7.4□□□□□ -1.22
CD44-239ENST00000639002 FOXP3Q9BZS1 431 aa7.4□□□□□ -1.22
CD44-239ENST00000639002 PSPNO60542 156 aa7.39□□□□□ -1.23
CD44-239ENST00000639002 CLEC3AO75596 197 aa7.39□□□□□ -1.23
CD44-239ENST00000639002 PRAMEF1O95521 474 aa7.39□□□□□ -1.23
CD44-239ENST00000639002 CFPP27918 469 aa7.39□□□□□ -1.23
CD44-239ENST00000639002 RAP1GAPP47736 663 aa7.39□□□□□ -1.23
CD44-239ENST00000639002 GALK1P51570 392 aa7.39□□□□□ -1.23
CD44-239ENST00000639002 RAD51AP2Q09MP3 1159 aa7.39□□□□□ -1.23
CD44-239ENST00000639002 LRRFIP1Q32MZ4 808 aaKnown RBP7.39□□□□□ -1.23
CD44-239ENST00000639002 BBS9Q3SYG4 887 aa7.39□□□□□ -1.23
CD44-239ENST00000639002 ZPBP2Q6X784 338 aa7.39□□□□□ -1.23
CD44-239ENST00000639002 SPOCD1Q6ZMY3 1216 aa7.39□□□□□ -1.23
CD44-239ENST00000639002 RNF111Q6ZNA4 994 aa7.39□□□□□ -1.23
CD44-239ENST00000639002 USP48Q86UV5 1035 aa7.39□□□□□ -1.23
CD44-239ENST00000639002 ZNF655Q8N720 491 aaPredicted RBP7.39□□□□□ -1.23
CD44-239ENST00000639002 ASCC2Q9H1I8 757 aaPredicted RBP7.39□□□□□ -1.23
CD44-239ENST00000639002 DCP1AQ9NPI6 582 aaPredicted RBP7.39□□□□□ -1.23
CD44-239ENST00000639002 SIGLEC6O43699 453 aa7.38□□□□□ -1.23
CD44-239ENST00000639002 CHMP4BP1P59074 171 aa7.38□□□□□ -1.23
CD44-239ENST00000639002 LINC00116Q8NCU8 138 aa7.38□□□□□ -1.23
CD44-239ENST00000639002 SLC6A18Q96N87 628 aa7.38□□□□□ -1.23
CD44-239ENST00000639002 EPB41L4BQ9H329 900 aa7.38□□□□□ -1.23
CD44-239ENST00000639002 METTL5Q9NRN9 209 aaKnown RBP7.38□□□□□ -1.23
CD44-239ENST00000639002 TCFL5Q9UL49 500 aa7.38□□□□□ -1.23
CD44-239ENST00000639002 ZNRF3Q9ULT6 936 aa7.38□□□□□ -1.23
CD44-239ENST00000639002 YBX2Q9Y2T7 364 aaKnown RBP7.38□□□□□ -1.23
CD44-239ENST00000639002 RPL10P27635 214 aaKnown RBP7.37□□□□□ -1.23
CD44-239ENST00000639002 INTS3Q68E01 1043 aaKnown RBP7.37□□□□□ -1.23
CD44-239ENST00000639002 SPPL2CQ8IUH8 684 aa7.37□□□□□ -1.23
CD44-239ENST00000639002 ANKS4BQ8N8V4 417 aa7.37□□□□□ -1.23
CD44-239ENST00000639002 PPP1R16BQ96T49 567 aa7.37□□□□□ -1.23
CD44-239ENST00000639002 C9IYK1 514 aa7.36□□□□□ -1.23
CD44-239ENST00000639002 ETV2O00321 342 aaPredicted RBP7.36□□□□□ -1.23
CD44-239ENST00000639002 RECKO95980 971 aa7.36□□□□□ -1.23
CD44-239ENST00000639002 CTSKP43235 329 aa7.36□□□□□ -1.23
CD44-239ENST00000639002 CEBPAP49715 358 aaPredicted RBP7.36□□□□□ -1.23
CD44-239ENST00000639002 CHRNEQ04844 493 aa7.36□□□□□ -1.23
CD44-239ENST00000639002 DUSP4Q13115 394 aa7.36□□□□□ -1.23
CD44-239ENST00000639002 LCE4AQ5TA78 99 aa7.36□□□□□ -1.23
CD44-239ENST00000639002 WAPLQ7Z5K2 1190 aa7.36□□□□□ -1.23
CD44-239ENST00000639002 BCL11AQ9H165 835 aa7.36□□□□□ -1.23
CD44-239ENST00000639002 CWC22Q9HCG8 908 aaKnown RBP7.36□□□□□ -1.23
CD44-239ENST00000639002 DDX41Q9UJV9 622 aaKnown RBP7.36□□□□□ -1.23
CD44-239ENST00000639002 MYOCOSA0A1B0GUC4 107 aa7.35□□□□□ -1.23
CD44-239ENST00000639002 FAM86C2PA6NEL3 165 aa7.35□□□□□ -1.23
CD44-239ENST00000639002 SHOXO15266 292 aa7.35□□□□□ -1.23
CD44-239ENST00000639002 USP2O75604 605 aaPredicted RBP7.35□□□□□ -1.23
CD44-239ENST00000639002 SYPP08247 313 aa7.35□□□□□ -1.23
CD44-239ENST00000639002 MED14OSP0DP75 135 aa7.35□□□□□ -1.23
CD44-239ENST00000639002 PCBP3P57721 371 aaKnown RBP7.35□□□□□ -1.23
CD44-239ENST00000639002 AUHQ13825 339 aaKnown RBP7.35□□□□□ -1.23
CD44-239ENST00000639002 SNX17Q15036 470 aa7.35□□□□□ -1.23
CD44-239ENST00000639002 LCE1DQ5T752 114 aa7.35□□□□□ -1.23
CD44-239ENST00000639002 NLRX1Q86UT6 975 aa7.35□□□□□ -1.23
CD44-239ENST00000639002 IRF2BP1Q8IU81 584 aa7.35□□□□□ -1.23
CD44-239ENST00000639002 RNF34Q969K3 372 aa7.35□□□□□ -1.23
CD44-239ENST00000639002 INTS4Q96HW7 963 aaKnown RBP7.35□□□□□ -1.23
CD44-239ENST00000639002 MAP6Q96JE9 813 aa7.35□□□□□ -1.23
CD44-239ENST00000639002 HHIPL1Q96JK4 782 aa7.35□□□□□ -1.23
CD44-239ENST00000639002 MCOLN1Q9GZU1 580 aa7.35□□□□□ -1.23
CD44-239ENST00000639002 CD320Q9NPF0 282 aa7.35□□□□□ -1.23
CD44-239ENST00000639002 CHST7Q9NS84 486 aa7.35□□□□□ -1.23
CD44-239ENST00000639002 GFOD1Q9NXC2 390 aa7.35□□□□□ -1.23
CD44-239ENST00000639002 GPR160Q9UJ42 338 aa7.35□□□□□ -1.23
CD44-239ENST00000639002 FKTNO75072 461 aa7.34□□□□□ -1.23
CD44-239ENST00000639002 VAMP1P23763 118 aa7.34□□□□□ -1.23
CD44-239ENST00000639002 FBLN7Q53RD9 439 aa7.34□□□□□ -1.23
CD44-239ENST00000639002 ATG14Q6ZNE5 492 aa7.34□□□□□ -1.23
CD44-239ENST00000639002 LCNL1Q6ZST4 164 aa7.34□□□□□ -1.23
CD44-239ENST00000639002 METTL16Q86W50 562 aaKnown RBP7.34□□□□□ -1.23
CD44-239ENST00000639002 SYTL4Q96C24 671 aaPredicted RBP7.34□□□□□ -1.23
CD44-239ENST00000639002 SLC6A17Q9H1V8 727 aa7.34□□□□□ -1.23
CD44-239ENST00000639002 ZNF552Q9H707 407 aaPredicted RBP7.34□□□□□ -1.23
CD44-239ENST00000639002 SUCOQ9UBS9 1254 aaKnown RBP7.34□□□□□ -1.23
CD44-239ENST00000639002 ZMYM5Q9UJ78 669 aa7.34□□□□□ -1.23
CD44-239ENST00000639002 NFIBO00712 420 aa7.33□□□□□ -1.24
CD44-239ENST00000639002 NRDCO43847 1150 aa7.33□□□□□ -1.24
CD44-239ENST00000639002 TMEM253P0C7T8 217 aa7.33□□□□□ -1.24
CD44-239ENST00000639002 GLDCP23378 1020 aa7.33□□□□□ -1.24
CD44-239ENST00000639002 KIR2DL1P43626 348 aaPredicted RBP7.33□□□□□ -1.24
CD44-239ENST00000639002 KIR2DL2P43627 348 aaPredicted RBP7.33□□□□□ -1.24
CD44-239ENST00000639002 ZYXQ15942 572 aaKnown RBP7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms