RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 ZSCAN23Q3MJ62 389 aa19.44■□□□□ 0.7
CLN3-252ENST00000636907 CABP5Q9NP86 173 aa19.44■□□□□ 0.7
CLN3-252ENST00000636907 ASTN2O75129 1339 aaPredicted RBP19.44■□□□□ 0.7
CLN3-252ENST00000636907 GOLGA6L4A6NEF3 574 aa19.43■□□□□ 0.7
CLN3-252ENST00000636907 NPY5RQ15761 445 aa19.43■□□□□ 0.7
CLN3-252ENST00000636907 ANO1Q5XXA6 986 aa19.43■□□□□ 0.7
CLN3-252ENST00000636907 LINC00301Q8NCQ3 95 aa19.43■□□□□ 0.7
CLN3-252ENST00000636907 GPKOWQ92917 476 aaPredicted RBP eCLIP19.43■□□□□ 0.7
CLN3-252ENST00000636907 YEATS4O95619 227 aa19.43■□□□□ 0.7
CLN3-252ENST00000636907 ZNF543Q08ER8 600 aa19.43■□□□□ 0.7
CLN3-252ENST00000636907 TNFAIP1Q13829 316 aa19.43■□□□□ 0.7
CLN3-252ENST00000636907 STK38Q15208 465 aa19.43■□□□□ 0.7
CLN3-252ENST00000636907 MIGA2Q7L4E1 593 aa19.43■□□□□ 0.7
CLN3-252ENST00000636907 GPC2Q8N158 579 aa19.43■□□□□ 0.7
CLN3-252ENST00000636907 UBA5Q9GZZ9 404 aa19.43■□□□□ 0.7
CLN3-252ENST00000636907 RIOX1Q9H6W3 641 aa19.43■□□□□ 0.7
CLN3-252ENST00000636907 GPCPD1Q9NPB8 672 aa19.43■□□□□ 0.7
CLN3-252ENST00000636907 SH3GLB2Q9NR46 395 aa19.43■□□□□ 0.7
CLN3-252ENST00000636907 HACL1Q9UJ83 578 aa19.43■□□□□ 0.7
CLN3-252ENST00000636907 H7C1D1 291 aa19.42■□□□□ 0.7
CLN3-252ENST00000636907 WWC2Q6AWC2 1192 aa19.42■□□□□ 0.7
CLN3-252ENST00000636907 SYAP1Q96A49 352 aaPredicted RBP19.42■□□□□ 0.7
CLN3-252ENST00000636907 TEPSINQ96N21 525 aa19.42■□□□□ 0.7
CLN3-252ENST00000636907 BRMS1Q9HCU9 246 aa19.42■□□□□ 0.7
CLN3-252ENST00000636907 NLRP5P59047 1200 aa19.41■□□□□ 0.7
CLN3-252ENST00000636907 MAP3K10Q02779 954 aa19.41■□□□□ 0.7
CLN3-252ENST00000636907 SF3A1Q15459 793 aaKnown RBP19.41■□□□□ 0.7
CLN3-252ENST00000636907 TYW1BQ6NUM6 668 aa19.41■□□□□ 0.7
CLN3-252ENST00000636907 RRP36Q96EU6 259 aaKnown RBP19.41■□□□□ 0.7
CLN3-252ENST00000636907 VAT1LQ9HCJ6 419 aa19.41■□□□□ 0.7
CLN3-252ENST00000636907 GPRC5DQ9NZD1 345 aa19.41■□□□□ 0.7
CLN3-252ENST00000636907 LIG1P18858 919 aa19.4■□□□□ 0.7
CLN3-252ENST00000636907 DEKP35659 375 aaKnown RBP19.4■□□□□ 0.7
CLN3-252ENST00000636907 ME1P48163 572 aa19.4■□□□□ 0.7
CLN3-252ENST00000636907 TOB1P50616 345 aaPredicted RBP19.4■□□□□ 0.7
CLN3-252ENST00000636907 CCDC96Q2M329 555 aa19.4■□□□□ 0.7
CLN3-252ENST00000636907 TTBK2Q6IQ55 1244 aa19.4■□□□□ 0.7
CLN3-252ENST00000636907 KCTD1Q719H9 257 aa19.4■□□□□ 0.7
CLN3-252ENST00000636907 HEATR3Q7Z4Q2 680 aa19.4■□□□□ 0.7
CLN3-252ENST00000636907 HOMER1Q86YM7 354 aa19.4■□□□□ 0.7
CLN3-252ENST00000636907 BICD2Q8TD16 824 aa19.4■□□□□ 0.7
CLN3-252ENST00000636907 TRPM4Q8TD43 1214 aa19.4■□□□□ 0.7
CLN3-252ENST00000636907 KCNG4Q8TDN1 519 aa19.4■□□□□ 0.7
CLN3-252ENST00000636907 PIGSQ96S52 555 aa19.4■□□□□ 0.7
CLN3-252ENST00000636907 BARHL2Q9NY43 387 aa19.4■□□□□ 0.7
CLN3-252ENST00000636907 RNF181Q9P0P0 153 aa19.4■□□□□ 0.7
CLN3-252ENST00000636907 STXBP3O00186 592 aa19.4■□□□□ 0.7
CLN3-252ENST00000636907 SPTLC2O15270 562 aa19.4■□□□□ 0.7
CLN3-252ENST00000636907 ZNF445P59923 1031 aa19.4■□□□□ 0.7
CLN3-252ENST00000636907 EARS2Q5JPH6 523 aaKnown RBP19.4■□□□□ 0.7
CLN3-252ENST00000636907 GPATCH4Q5T3I0 446 aaKnown RBP19.4■□□□□ 0.7
CLN3-252ENST00000636907 SLFN13Q68D06 897 aa19.4■□□□□ 0.7
CLN3-252ENST00000636907 DCAF4Q8WV16 495 aa19.4■□□□□ 0.7
CLN3-252ENST00000636907 TNFRSF25Q93038 417 aa19.4■□□□□ 0.7
CLN3-252ENST00000636907 ZBTB21Q9ULJ3 1066 aa19.4■□□□□ 0.7
CLN3-252ENST00000636907 PCDHA7Q9UN72 937 aa19.4■□□□□ 0.7
CLN3-252ENST00000636907 FAM205CA6NFA0 338 aa19.39■□□□□ 0.69
CLN3-252ENST00000636907 ADAMTS3O15072 1205 aa19.39■□□□□ 0.69
CLN3-252ENST00000636907 RAD21O60216 631 aa19.39■□□□□ 0.69
CLN3-252ENST00000636907 SLC39A14Q15043 492 aa19.39■□□□□ 0.69
CLN3-252ENST00000636907 PTPAQ15257 358 aa19.39■□□□□ 0.69
CLN3-252ENST00000636907 RILPL1Q5EBL4 403 aa19.39■□□□□ 0.69
CLN3-252ENST00000636907 CCDC183Q5T5S1 534 aa19.39■□□□□ 0.69
CLN3-252ENST00000636907 GMCL1P1Q8NEA9 526 aa19.39■□□□□ 0.69
CLN3-252ENST00000636907 SEC63Q9UGP8 760 aaKnown RBP19.39■□□□□ 0.69
CLN3-252ENST00000636907 UTRNP46939 3433 aa19.38■□□□□ 0.69
CLN3-252ENST00000636907 A0A1W2PRG0 241 aa19.38■□□□□ 0.69
CLN3-252ENST00000636907 SYCE3A1L190 88 aa19.38■□□□□ 0.69
CLN3-252ENST00000636907 CALML3P27482 149 aa19.38■□□□□ 0.69
CLN3-252ENST00000636907 CAP2P40123 477 aa19.38■□□□□ 0.69
CLN3-252ENST00000636907 CCDC148Q8NFR7 591 aa19.38■□□□□ 0.69
CLN3-252ENST00000636907 DEFB129Q9H1M3 183 aa19.38■□□□□ 0.69
CLN3-252ENST00000636907 PCDHA4Q9UN74 947 aa19.38■□□□□ 0.69
CLN3-252ENST00000636907 F5H6K3 240 aa19.37■□□□□ 0.69
CLN3-252ENST00000636907 EPS15P42566 896 aa19.37■□□□□ 0.69
CLN3-252ENST00000636907 SLC1A4P43007 532 aa19.37■□□□□ 0.69
CLN3-252ENST00000636907 KLRC3Q07444 240 aa19.37■□□□□ 0.69
CLN3-252ENST00000636907 NOM1Q5C9Z4 860 aaKnown RBP19.37■□□□□ 0.69
CLN3-252ENST00000636907 ANGEL2Q5VTE6 544 aaKnown RBP19.37■□□□□ 0.69
CLN3-252ENST00000636907 GAS2L3Q86XJ1 694 aa19.37■□□□□ 0.69
CLN3-252ENST00000636907 ADGRF4Q8IZF3 695 aa19.37■□□□□ 0.69
CLN3-252ENST00000636907 BLIDQ8IZY5 108 aa19.37■□□□□ 0.69
CLN3-252ENST00000636907 JMJD4Q9H9V9 463 aa19.37■□□□□ 0.69
CLN3-252ENST00000636907 FSD2A1L4K1 749 aa19.36■□□□□ 0.69
CLN3-252ENST00000636907 DDNO94850 711 aaPredicted RBP19.36■□□□□ 0.69
CLN3-252ENST00000636907 SLC16A2P36021 539 aa19.36■□□□□ 0.69
CLN3-252ENST00000636907 ADALQ6DHV7 355 aa19.36■□□□□ 0.69
CLN3-252ENST00000636907 CCAR1Q8IX12 1150 aaKnown RBP19.36■□□□□ 0.69
CLN3-252ENST00000636907 FAM177A1Q8N128 213 aaPredicted RBP19.36■□□□□ 0.69
CLN3-252ENST00000636907 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.36■□□□□ 0.69
CLN3-252ENST00000636907 ISY1Q9ULR0 285 aaKnown RBP19.36■□□□□ 0.69
CLN3-252ENST00000636907 PHF20L1A8MW92 1017 aa19.36■□□□□ 0.69
CLN3-252ENST00000636907 NDUFB10O96000 172 aa19.36■□□□□ 0.69
CLN3-252ENST00000636907 MARCKSP29966 332 aaPredicted RBP19.36■□□□□ 0.69
CLN3-252ENST00000636907 ECE1P42892 770 aa19.36■□□□□ 0.69
CLN3-252ENST00000636907 C9orf131Q5VYM1 1079 aa19.36■□□□□ 0.69
CLN3-252ENST00000636907 DAGLBQ8NCG7 672 aa19.36■□□□□ 0.69
CLN3-252ENST00000636907 GMCL1Q96IK5 515 aa19.36■□□□□ 0.69
CLN3-252ENST00000636907 GOLPH3LQ9H4A5 285 aa19.36■□□□□ 0.69
CLN3-252ENST00000636907 ARHGEF10LQ9HCE6 1279 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms