RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 KAT14Q9H8E8 782 aa12.32□□□□□ -0.44
CLN3-244ENST00000636147 PSD3Q9NYI0 1048 aa12.32□□□□□ -0.44
CLN3-244ENST00000636147 TTC26A0AVF1 554 aa12.31□□□□□ -0.44
CLN3-244ENST00000636147 TULP2O00295 520 aa12.31□□□□□ -0.44
CLN3-244ENST00000636147 IFNAR1P17181 557 aa12.31□□□□□ -0.44
CLN3-244ENST00000636147 MSL1Q68DK7 614 aa12.31□□□□□ -0.44
CLN3-244ENST00000636147 PNMA8AQ86V59 439 aaPredicted RBP12.31□□□□□ -0.44
CLN3-244ENST00000636147 PACS2Q86VP3 889 aa12.31□□□□□ -0.44
CLN3-244ENST00000636147 IFT20Q8IY31 132 aa12.31□□□□□ -0.44
CLN3-244ENST00000636147 DDX17Q92841 729 aaKnown RBP12.31□□□□□ -0.44
CLN3-244ENST00000636147 CALML4Q96GE6 196 aa12.31□□□□□ -0.44
CLN3-244ENST00000636147 TSG101Q99816 390 aa12.31□□□□□ -0.44
CLN3-244ENST00000636147 SELENOSQ9BQE4 189 aa12.31□□□□□ -0.44
CLN3-244ENST00000636147 MYO1AQ9UBC5 1043 aa12.31□□□□□ -0.44
CLN3-244ENST00000636147 LRWD1Q9UFC0 647 aa12.31□□□□□ -0.44
CLN3-244ENST00000636147 A2ML1A8K2U0 1454 aa12.31□□□□□ -0.44
CLN3-244ENST00000636147 FMNL1O95466 1100 aaPredicted RBP12.31□□□□□ -0.44
CLN3-244ENST00000636147 RPN1P04843 607 aaKnown RBP12.31□□□□□ -0.44
CLN3-244ENST00000636147 PHKG2P15735 406 aa12.31□□□□□ -0.44
CLN3-244ENST00000636147 USP14P54578 494 aa12.31□□□□□ -0.44
CLN3-244ENST00000636147 COG1Q8WTW3 980 aa12.31□□□□□ -0.44
CLN3-244ENST00000636147 SPAG5Q96R06 1193 aa12.31□□□□□ -0.44
CLN3-244ENST00000636147 TNKSO95271 1327 aa12.31□□□□□ -0.44
CLN3-244ENST00000636147 ARHGAP25P42331 645 aa12.31□□□□□ -0.44
CLN3-244ENST00000636147 LETM2Q2VYF4 491 aa12.31□□□□□ -0.44
CLN3-244ENST00000636147 ARFGAP2Q8N6H7 521 aa12.31□□□□□ -0.44
CLN3-244ENST00000636147 FOXP1Q9H334 677 aaPredicted RBP12.31□□□□□ -0.44
CLN3-244ENST00000636147 BAIAP2L1Q9UHR4 511 aa12.31□□□□□ -0.44
CLN3-244ENST00000636147 ARAP3Q8WWN8 1544 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 A0A1B0GTH6 734 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 ESYT3A0FGR9 886 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 CLNS1AP54105 237 aaKnown RBP12.3□□□□□ -0.44
CLN3-244ENST00000636147 AMPD3Q01432 767 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 CUL4BQ13620 913 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 DYMQ7RTS9 669 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 SYNE4Q8N205 404 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 SH2D3CQ8N5H7 860 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 RASGRP4Q8TDF6 673 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 TUBGCP2Q9BSJ2 902 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 OVOS2A0A0J9YW53 1432 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 OVOS2Q6IE36 1432 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 CEP170BQ9Y4F5 1589 aaPredicted RBP12.3□□□□□ -0.44
CLN3-244ENST00000636147 MOCS3O95396 460 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 CCDC172P0C7W6 258 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 RAPGEF1Q13905 1077 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 ATG9AQ7Z3C6 839 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 SMCR8Q8TEV9 937 aaPredicted RBP12.3□□□□□ -0.44
CLN3-244ENST00000636147 INTS13Q9NVM9 706 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 HECW2Q9P2P5 1572 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 NEDD4P46934 1319 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 MAGEB6P1A0A0J9YX57 407 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 H7C1D1 291 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 GYPCP04921 128 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 RPSAP08865 295 aaKnown RBP12.3□□□□□ -0.44
CLN3-244ENST00000636147 KIF5BP33176 963 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 ADD2P35612 726 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 CORO7P57737 925 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 NNTQ13423 1086 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 TRIM58Q8NG06 486 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 ZCRB1Q8TBF4 217 aaKnown RBP12.3□□□□□ -0.44
CLN3-244ENST00000636147 TEX13AQ9BXU3 409 aaPredicted RBP12.3□□□□□ -0.44
CLN3-244ENST00000636147 ADGRL3Q9HAR2 1447 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 EPB41L5Q9HCM4 733 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 PIH1D3Q9NQM4 214 aaKnown RBP12.3□□□□□ -0.44
CLN3-244ENST00000636147 ADD3Q9UEY8 706 aaKnown RBP12.3□□□□□ -0.44
CLN3-244ENST00000636147 USP31Q70CQ4 1352 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 PPLO60437 1756 aa12.3□□□□□ -0.44
CLN3-244ENST00000636147 GOLGA8KD6RF30 607 aa12.29□□□□□ -0.44
CLN3-244ENST00000636147 FGFR1OPO95684 399 aaKnown RBP12.29□□□□□ -0.44
CLN3-244ENST00000636147 CALRP27797 417 aaKnown RBP12.29□□□□□ -0.44
CLN3-244ENST00000636147 MCAMP43121 646 aa12.29□□□□□ -0.44
CLN3-244ENST00000636147 DNM2P50570 870 aa12.29□□□□□ -0.44
CLN3-244ENST00000636147 FAM47AQ5JRC9 791 aa12.29□□□□□ -0.44
CLN3-244ENST00000636147 KRT26Q7Z3Y9 468 aa12.29□□□□□ -0.44
CLN3-244ENST00000636147 TSGA10Q9BZW7 698 aa12.29□□□□□ -0.44
CLN3-244ENST00000636147 BICDL2A1A5D9 508 aa12.29□□□□□ -0.44
CLN3-244ENST00000636147 RFX5P48382 616 aaPredicted RBP12.29□□□□□ -0.44
CLN3-244ENST00000636147 PAK2Q13177 524 aa12.29□□□□□ -0.44
CLN3-244ENST00000636147 PTPAQ15257 358 aa12.29□□□□□ -0.44
CLN3-244ENST00000636147 TCP11X2Q5H9J9 407 aa12.29□□□□□ -0.44
CLN3-244ENST00000636147 RASGRP2Q7LDG7 609 aa12.29□□□□□ -0.44
CLN3-244ENST00000636147 SPATA5Q8NB90 893 aa12.29□□□□□ -0.44
CLN3-244ENST00000636147 NOX5Q96PH1 765 aa12.29□□□□□ -0.44
CLN3-244ENST00000636147 NCAPGQ9BPX3 1015 aa12.29□□□□□ -0.44
CLN3-244ENST00000636147 GREM2Q9H772 168 aa12.29□□□□□ -0.44
CLN3-244ENST00000636147 GPR108Q9NPR9 543 aa12.29□□□□□ -0.44
CLN3-244ENST00000636147 SMARCAL1Q9NZC9 954 aa12.29□□□□□ -0.44
CLN3-244ENST00000636147 FAM184BQ9ULE4 1060 aa12.29□□□□□ -0.44
CLN3-244ENST00000636147 GTPBP6O43824 516 aaPredicted RBP12.29□□□□□ -0.44
CLN3-244ENST00000636147 CEP104O60308 925 aa12.29□□□□□ -0.44
CLN3-244ENST00000636147 RASSF7Q02833 373 aa12.29□□□□□ -0.44
CLN3-244ENST00000636147 ACTN3Q08043 901 aaPredicted RBP12.29□□□□□ -0.44
CLN3-244ENST00000636147 CFAP221Q4G0U5 840 aa12.29□□□□□ -0.44
CLN3-244ENST00000636147 ZFYVE27Q5T4F4 411 aa12.29□□□□□ -0.44
CLN3-244ENST00000636147 CRACR2BQ8N4Y2 399 aaPredicted RBP12.29□□□□□ -0.44
CLN3-244ENST00000636147 KIFC2Q96AC6 838 aa12.29□□□□□ -0.44
CLN3-244ENST00000636147 EHD4Q9H223 541 aa12.29□□□□□ -0.44
CLN3-244ENST00000636147 FBXO2Q9UK22 296 aaPredicted RBP12.29□□□□□ -0.44
CLN3-244ENST00000636147 AXIN2Q9Y2T1 843 aa12.29□□□□□ -0.44
CLN3-244ENST00000636147 COL15A1P39059 1388 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms