RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 UPK3BL2E5RIL1 263 aa2.21□□□□□ -2.06
SMARCB1-209ENST00000635578 FFAR3O14843 346 aa2.21□□□□□ -2.06
SMARCB1-209ENST00000635578 MATN3O15232 486 aa2.21□□□□□ -2.06
SMARCB1-209ENST00000635578 PNLIPP16233 465 aa2.21□□□□□ -2.06
SMARCB1-209ENST00000635578 YBX1P67809 324 aaKnown RBP2.21□□□□□ -2.06
SMARCB1-209ENST00000635578 PDE4BQ07343 736 aa2.21□□□□□ -2.06
SMARCB1-209ENST00000635578 RAB3GAP1Q15042 981 aa2.21□□□□□ -2.06
SMARCB1-209ENST00000635578 CCDC85BQ15834 202 aaPredicted RBP2.21□□□□□ -2.06
SMARCB1-209ENST00000635578 NT5DC1Q5TFE4 455 aa2.21□□□□□ -2.06
SMARCB1-209ENST00000635578 ZPBP2Q6X784 338 aa2.21□□□□□ -2.06
SMARCB1-209ENST00000635578 LDHDQ86WU2 507 aa2.21□□□□□ -2.06
SMARCB1-209ENST00000635578 MCATQ8IVS2 390 aaKnown RBP2.21□□□□□ -2.06
SMARCB1-209ENST00000635578 FAM13CQ8NE31 585 aa2.21□□□□□ -2.06
SMARCB1-209ENST00000635578 RNF141Q8WVD5 230 aa2.21□□□□□ -2.06
SMARCB1-209ENST00000635578 DDX1Q92499 740 aaKnown RBP2.21□□□□□ -2.06
SMARCB1-209ENST00000635578 MAP6Q96JE9 813 aa2.21□□□□□ -2.06
SMARCB1-209ENST00000635578 HHIPL1Q96JK4 782 aa2.21□□□□□ -2.06
SMARCB1-209ENST00000635578 FOXP3Q9BZS1 431 aa2.21□□□□□ -2.06
SMARCB1-209ENST00000635578 SRCIN1Q9C0H9 1055 aa2.21□□□□□ -2.06
SMARCB1-209ENST00000635578 CRTAC1Q9NQ79 661 aa2.21□□□□□ -2.06
SMARCB1-209ENST00000635578 CORINQ9Y5Q5 1042 aa2.21□□□□□ -2.06
SMARCB1-209ENST00000635578 RBM47A0AV96 593 aaKnown RBP2.2□□□□□ -2.06
SMARCB1-209ENST00000635578 ABLIM1O14639 778 aa2.2□□□□□ -2.06
SMARCB1-209ENST00000635578 TREHO43280 583 aa2.2□□□□□ -2.06
SMARCB1-209ENST00000635578 NRDCO43847 1150 aa2.2□□□□□ -2.06
SMARCB1-209ENST00000635578 BUB1BO60566 1050 aaPredicted RBP2.2□□□□□ -2.06
SMARCB1-209ENST00000635578 MPOP05164 745 aa2.2□□□□□ -2.06
SMARCB1-209ENST00000635578 MAPK1P28482 360 aa2.2□□□□□ -2.06
SMARCB1-209ENST00000635578 CNR2P34972 360 aa2.2□□□□□ -2.06
SMARCB1-209ENST00000635578 MAGEA10P43363 369 aaPredicted RBP2.2□□□□□ -2.06
SMARCB1-209ENST00000635578 RTP1P59025 263 aa2.2□□□□□ -2.06
SMARCB1-209ENST00000635578 CHMP4BP1P59074 171 aa2.2□□□□□ -2.06
SMARCB1-209ENST00000635578 NMIQ13287 307 aaPredicted RBP2.2□□□□□ -2.06
SMARCB1-209ENST00000635578 DSC3Q14574 896 aa2.2□□□□□ -2.06
SMARCB1-209ENST00000635578 RNF111Q6ZNA4 994 aa2.2□□□□□ -2.06
SMARCB1-209ENST00000635578 SV2BQ7L1I2 683 aa2.2□□□□□ -2.06
SMARCB1-209ENST00000635578 C14orf37Q86TY3 774 aa2.2□□□□□ -2.06
SMARCB1-209ENST00000635578 JARID2Q92833 1246 aaPredicted RBP2.2□□□□□ -2.06
SMARCB1-209ENST00000635578 KREMEN1Q96MU8 473 aa2.2□□□□□ -2.06
SMARCB1-209ENST00000635578 SPATA25Q9BR10 227 aa2.2□□□□□ -2.06
SMARCB1-209ENST00000635578 SCAND2PQ9GZW5 306 aaPredicted RBP2.2□□□□□ -2.06
SMARCB1-209ENST00000635578 ASCC2Q9H1I8 757 aaPredicted RBP2.2□□□□□ -2.06
SMARCB1-209ENST00000635578 MIR1-1HGQ9H1L0 117 aa2.2□□□□□ -2.06
SMARCB1-209ENST00000635578 SMPD4Q9NXE4 827 aa2.2□□□□□ -2.06
SMARCB1-209ENST00000635578 KLHL14Q9P2G3 628 aa2.2□□□□□ -2.06
SMARCB1-209ENST00000635578 KLHL3Q9UH77 587 aa2.2□□□□□ -2.06
SMARCB1-209ENST00000635578 WWC3Q9ULE0 1092 aa2.2□□□□□ -2.06
SMARCB1-209ENST00000635578 TACC3Q9Y6A5 838 aa2.2□□□□□ -2.06
SMARCB1-209ENST00000635578 TAF6LQ9Y6J9 622 aa2.2□□□□□ -2.06
SMARCB1-209ENST00000635578 TMEM82A0PJX8 343 aa2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 SYPP08247 313 aa2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 PRKCAP17252 672 aa2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 PLCG1P19174 1290 aa2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 ARL4AP40617 200 aa2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 KIR2DL1P43626 348 aaPredicted RBP2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 KIR2DL2P43627 348 aaPredicted RBP2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 HMGA2P52926 109 aa2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 YARSP54577 528 aaKnown RBP2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 PCBP3P57721 371 aaKnown RBP2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 ERVFRD-1P60508 538 aa2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 ADAM17P78536 824 aa2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 ZNF200P98182 395 aaPredicted RBP2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 ZFPM1Q8IX07 1006 aa2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 RETREG2Q8NC44 543 aa2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 FBF1Q8TES7 1133 aa2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 TCTN2Q96GX1 697 aa2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 SORCS2Q96PQ0 1159 aa2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 ASPNQ9BXN1 380 aa2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 C12orf49Q9H741 205 aa2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 FAM8A1Q9UBU6 413 aa2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 SUSD2Q9UGT4 822 aa2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 DCTN4Q9UJW0 460 aa2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 ADAM30Q9UKF2 790 aa2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 TCFL5Q9UL49 500 aa2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 SPG7Q9UQ90 795 aa2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 GPR55Q9Y2T6 319 aaPredicted RBP2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 ZNF281Q9Y2X9 895 aa2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 PCDHA5Q9Y5H7 936 aa2.19□□□□□ -2.06
SMARCB1-209ENST00000635578 GIPC1O14908 333 aa2.18□□□□□ -2.06
SMARCB1-209ENST00000635578 C6P13671 934 aa2.18□□□□□ -2.06
SMARCB1-209ENST00000635578 TFE3P19532 575 aaPredicted RBP2.18□□□□□ -2.06
SMARCB1-209ENST00000635578 CYP4F8P98187 520 aa2.18□□□□□ -2.06
SMARCB1-209ENST00000635578 ATP2B2Q01814 1243 aa2.18□□□□□ -2.06
SMARCB1-209ENST00000635578 RPL6Q02878 288 aaKnown RBP2.18□□□□□ -2.06
SMARCB1-209ENST00000635578 TMEM62Q0P6H9 643 aa2.18□□□□□ -2.06
SMARCB1-209ENST00000635578 TSNAXIP1Q2TAA8 658 aa2.18□□□□□ -2.06
SMARCB1-209ENST00000635578 BBS9Q3SYG4 887 aa2.18□□□□□ -2.06
SMARCB1-209ENST00000635578 PLEKHN1Q494U1 663 aaPredicted RBP2.18□□□□□ -2.06
SMARCB1-209ENST00000635578 HSF5Q4G112 596 aaPredicted RBP2.18□□□□□ -2.06
SMARCB1-209ENST00000635578 ZFYVE27Q5T4F4 411 aa2.18□□□□□ -2.06
SMARCB1-209ENST00000635578 GALNT18Q6P9A2 607 aa2.18□□□□□ -2.06
SMARCB1-209ENST00000635578 RPTNQ6XPR3 784 aa2.18□□□□□ -2.06
SMARCB1-209ENST00000635578 LIPIQ6XZB0 460 aa2.18□□□□□ -2.06
SMARCB1-209ENST00000635578 TMC3Q7Z5M5 1100 aa2.18□□□□□ -2.06
SMARCB1-209ENST00000635578 TXNDC2Q86VQ3 553 aa2.18□□□□□ -2.06
SMARCB1-209ENST00000635578 PHACTR4Q8IZ21 702 aa2.18□□□□□ -2.06
SMARCB1-209ENST00000635578 USHBP1Q8N6Y0 703 aa2.18□□□□□ -2.06
SMARCB1-209ENST00000635578 NUP43Q8NFH3 380 aa2.18□□□□□ -2.06
SMARCB1-209ENST00000635578 ANKRD24Q8TF21 1146 aa2.18□□□□□ -2.06
SMARCB1-209ENST00000635578 LOXL4Q96JB6 756 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms