RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 ANAPC15P60006 121 aa22.4■■□□□ 1.18
SQSTM1-216ENST00000626660 PNMA1Q8ND90 353 aa22.4■■□□□ 1.18
SQSTM1-216ENST00000626660 GTF3C2Q8WUA4 911 aaPredicted RBP22.4■■□□□ 1.18
SQSTM1-216ENST00000626660 DCAF4Q8WV16 495 aa22.4■■□□□ 1.18
SQSTM1-216ENST00000626660 CCDC85CA6NKD9 419 aa22.39■■□□□ 1.17
SQSTM1-216ENST00000626660 TLR2O60603 784 aa22.39■■□□□ 1.17
SQSTM1-216ENST00000626660 FLOT1O75955 427 aa22.39■■□□□ 1.17
SQSTM1-216ENST00000626660 BMP3P12645 472 aa22.39■■□□□ 1.17
SQSTM1-216ENST00000626660 CCDC96Q2M329 555 aa22.39■■□□□ 1.17
SQSTM1-216ENST00000626660 TMTC2Q8N394 836 aa22.39■■□□□ 1.17
SQSTM1-216ENST00000626660 IGDCC4Q8TDY8 1250 aa22.39■■□□□ 1.17
SQSTM1-216ENST00000626660 NUP88Q99567 741 aaPredicted RBP22.39■■□□□ 1.17
SQSTM1-216ENST00000626660 P2RX7Q99572 595 aaKnown RBP22.39■■□□□ 1.17
SQSTM1-216ENST00000626660 TSKSQ9UJT2 592 aa22.39■■□□□ 1.17
SQSTM1-216ENST00000626660 CASTP20810 708 aaKnown RBP22.38■■□□□ 1.17
SQSTM1-216ENST00000626660 GCLCP48506 637 aaPredicted RBP22.38■■□□□ 1.17
SQSTM1-216ENST00000626660 HERVK_113P62684 666 aa22.38■■□□□ 1.17
SQSTM1-216ENST00000626660 FGD1P98174 961 aa22.38■■□□□ 1.17
SQSTM1-216ENST00000626660 COG2Q14746 738 aa22.38■■□□□ 1.17
SQSTM1-216ENST00000626660 CHMP4CQ96CF2 233 aa22.38■■□□□ 1.17
SQSTM1-216ENST00000626660 TM6SF1Q9BZW5 370 aa22.38■■□□□ 1.17
SQSTM1-216ENST00000626660 HOXC10Q9NYD6 342 aa22.38■■□□□ 1.17
SQSTM1-216ENST00000626660 SH2B2O14492 632 aaPredicted RBP22.37■■□□□ 1.17
SQSTM1-216ENST00000626660 EXOSC10Q01780 885 aaKnown RBP22.37■■□□□ 1.17
SQSTM1-216ENST00000626660 IKQ13123 557 aaPredicted RBP22.37■■□□□ 1.17
SQSTM1-216ENST00000626660 SAMD1Q6SPF0 538 aaPredicted RBP22.37■■□□□ 1.17
SQSTM1-216ENST00000626660 NFXL1Q6ZNB6 911 aa22.37■■□□□ 1.17
SQSTM1-216ENST00000626660 R3HDMLQ9H3Y0 253 aa22.37■■□□□ 1.17
SQSTM1-216ENST00000626660 LY9Q9HBG7 655 aa22.37■■□□□ 1.17
SQSTM1-216ENST00000626660 FEM1BQ9UK73 627 aa22.37■■□□□ 1.17
SQSTM1-216ENST00000626660 MYPNQ86TC9 1320 aa22.36■■□□□ 1.17
SQSTM1-216ENST00000626660 ADGRA2Q96PE1 1338 aa22.36■■□□□ 1.17
SQSTM1-216ENST00000626660 CCDC69A6NI79 296 aa22.36■■□□□ 1.17
SQSTM1-216ENST00000626660 RPS6KB1P23443 525 aa22.36■■□□□ 1.17
SQSTM1-216ENST00000626660 LIFRP42702 1097 aa22.36■■□□□ 1.17
SQSTM1-216ENST00000626660 COL9A3Q14050 684 aaPredicted RBP22.36■■□□□ 1.17
SQSTM1-216ENST00000626660 CATIPQ7Z7H3 387 aa22.36■■□□□ 1.17
SQSTM1-216ENST00000626660 SLF1Q9BQI6 1058 aa22.36■■□□□ 1.17
SQSTM1-216ENST00000626660 LRRC2Q9BYS8 371 aa22.36■■□□□ 1.17
SQSTM1-216ENST00000626660 CPA4Q9UI42 421 aa22.36■■□□□ 1.17
SQSTM1-216ENST00000626660 CYP46A1Q9Y6A2 500 aa22.36■■□□□ 1.17
SQSTM1-216ENST00000626660 PARP14Q460N5 1801 aa22.36■■□□□ 1.17
SQSTM1-216ENST00000626660 SPDYE16A6NNV3 312 aaPredicted RBP22.35■■□□□ 1.17
SQSTM1-216ENST00000626660 TMEM232C9JQI7 657 aa22.35■■□□□ 1.17
SQSTM1-216ENST00000626660 GPR25O00155 361 aa22.35■■□□□ 1.17
SQSTM1-216ENST00000626660 PDHBP11177 359 aa22.35■■□□□ 1.17
SQSTM1-216ENST00000626660 DSG3P32926 999 aa22.35■■□□□ 1.17
SQSTM1-216ENST00000626660 NOM1Q5C9Z4 860 aaKnown RBP22.35■■□□□ 1.17
SQSTM1-216ENST00000626660 KCTD1Q719H9 257 aa22.35■■□□□ 1.17
SQSTM1-216ENST00000626660 FAM160B2Q86V87 743 aa22.35■■□□□ 1.17
SQSTM1-216ENST00000626660 CHURC1Q8WUH1 139 aa22.35■■□□□ 1.17
SQSTM1-216ENST00000626660 TCEANC2Q96MN5 208 aa22.35■■□□□ 1.17
SQSTM1-216ENST00000626660 ZSWIM6Q9HCJ5 1215 aa22.35■■□□□ 1.17
SQSTM1-216ENST00000626660 GPHNQ9NQX3 736 aaPredicted RBP22.35■■□□□ 1.17
SQSTM1-216ENST00000626660 RLFQ13129 1914 aa22.35■■□□□ 1.17
SQSTM1-216ENST00000626660 CPA1P15085 419 aa22.34■■□□□ 1.17
SQSTM1-216ENST00000626660 STAT2P52630 851 aa22.34■■□□□ 1.17
SQSTM1-216ENST00000626660 GPATCH4Q5T3I0 446 aaKnown RBP22.34■■□□□ 1.17
SQSTM1-216ENST00000626660 C17orf99Q6UX52 265 aa22.34■■□□□ 1.17
SQSTM1-216ENST00000626660 LBX2Q6XYB7 198 aa22.34■■□□□ 1.17
SQSTM1-216ENST00000626660 RUFY3Q7L099 469 aa22.34■■□□□ 1.17
SQSTM1-216ENST00000626660 SENP2Q9HC62 589 aa22.34■■□□□ 1.17
SQSTM1-216ENST00000626660 FBXO28Q9NVF7 368 aa22.34■■□□□ 1.17
SQSTM1-216ENST00000626660 PPP1R9AQ9ULJ8 1098 aa22.34■■□□□ 1.17
SQSTM1-216ENST00000626660 FKTNO75072 461 aa22.33■■□□□ 1.17
SQSTM1-216ENST00000626660 SNHG28P0DPA3 235 aa22.33■■□□□ 1.17
SQSTM1-216ENST00000626660 MLLT1Q03111 559 aaPredicted RBP22.33■■□□□ 1.17
SQSTM1-216ENST00000626660 ZNF543Q08ER8 600 aa22.33■■□□□ 1.17
SQSTM1-216ENST00000626660 ASPRV1Q53RT3 343 aa22.33■■□□□ 1.17
SQSTM1-216ENST00000626660 SYNE3Q6ZMZ3 975 aa22.33■■□□□ 1.17
SQSTM1-216ENST00000626660 RASGRP2Q7LDG7 609 aa22.33■■□□□ 1.17
SQSTM1-216ENST00000626660 MB21D1Q8N884 522 aa22.33■■□□□ 1.17
SQSTM1-216ENST00000626660 PRPF38AQ8NAV1 312 aaKnown RBP22.33■■□□□ 1.17
SQSTM1-216ENST00000626660 ATG4CQ96DT6 458 aa22.33■■□□□ 1.17
SQSTM1-216ENST00000626660 PAGR1Q9BTK6 254 aa22.33■■□□□ 1.17
SQSTM1-216ENST00000626660 BACH2Q9BYV9 841 aa22.33■■□□□ 1.17
SQSTM1-216ENST00000626660 C22orf23Q9BZE7 217 aa22.33■■□□□ 1.17
SQSTM1-216ENST00000626660 GPCPD1Q9NPB8 672 aa22.33■■□□□ 1.17
SQSTM1-216ENST00000626660 RABGAP1Q9Y3P9 1069 aa22.33■■□□□ 1.17
SQSTM1-216ENST00000626660 CTDP1Q9Y5B0 961 aaPredicted RBP22.33■■□□□ 1.17
SQSTM1-216ENST00000626660 FRMPD2Q68DX3 1309 aaPredicted RBP22.32■■□□□ 1.16
SQSTM1-216ENST00000626660 PLA2G6O60733 806 aa22.32■■□□□ 1.16
SQSTM1-216ENST00000626660 DDAH1O94760 285 aa22.32■■□□□ 1.16
SQSTM1-216ENST00000626660 PARP1P09874 1014 aaKnown RBP22.32■■□□□ 1.16
SQSTM1-216ENST00000626660 BCRP11274 1271 aa22.32■■□□□ 1.16
SQSTM1-216ENST00000626660 SP3Q02447 781 aa22.32■■□□□ 1.16
SQSTM1-216ENST00000626660 FAM110CQ1W6H9 321 aa22.32■■□□□ 1.16
SQSTM1-216ENST00000626660 ZNF654Q8IZM8 581 aa22.32■■□□□ 1.16
SQSTM1-216ENST00000626660 ANKRD13CQ8N6S4 541 aa22.32■■□□□ 1.16
SQSTM1-216ENST00000626660 KIFC2Q96AC6 838 aa22.32■■□□□ 1.16
SQSTM1-216ENST00000626660 UPF3BQ9BZI7 483 aaKnown RBP22.32■■□□□ 1.16
SQSTM1-216ENST00000626660 SLC12A7Q9Y666 1083 aa22.32■■□□□ 1.16
SQSTM1-216ENST00000626660 CASP8AP2Q9UKL3 1982 aa22.31■■□□□ 1.16
SQSTM1-216ENST00000626660 Q6ZUG5 572 aa22.31■■□□□ 1.16
SQSTM1-216ENST00000626660 SGMS1Q86VZ5 419 aa22.31■■□□□ 1.16
SQSTM1-216ENST00000626660 IL17RAQ96F46 866 aa22.31■■□□□ 1.16
SQSTM1-216ENST00000626660 MORF4L1Q9UBU8 362 aa22.31■■□□□ 1.16
SQSTM1-216ENST00000626660 ZBED4O75132 1171 aa22.3■■□□□ 1.16
SQSTM1-216ENST00000626660 CALM1P0DP23 149 aa22.3■■□□□ 1.16
SQSTM1-216ENST00000626660 CALM2P0DP24 149 aa22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms