RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 BCL11AQ9H165 835 aa17.77■□□□□ 0.44
PNKP-218ENST00000625299 SH2D4AQ9H788 454 aa17.77■□□□□ 0.44
PNKP-218ENST00000625299 ZNF532Q9HCE3 1301 aa17.76■□□□□ 0.43
PNKP-218ENST00000625299 A0A1W2PQ45 241 aaPredicted RBP17.76■□□□□ 0.43
PNKP-218ENST00000625299 A0A1W2PQY0 241 aa17.76■□□□□ 0.43
PNKP-218ENST00000625299 RAD21O60216 631 aa17.76■□□□□ 0.43
PNKP-218ENST00000625299 FPGSQ05932 587 aa17.76■□□□□ 0.43
PNKP-218ENST00000625299 TMEM132BQ14DG7 1078 aa17.76■□□□□ 0.43
PNKP-218ENST00000625299 TTF1Q15361 905 aaPredicted RBP17.76■□□□□ 0.43
PNKP-218ENST00000625299 SYMPKQ92797 1274 aaKnown RBP17.76■□□□□ 0.43
PNKP-218ENST00000625299 DNAJC2Q99543 621 aaKnown RBP17.76■□□□□ 0.43
PNKP-218ENST00000625299 VCPKMTQ9H867 229 aa17.76■□□□□ 0.43
PNKP-218ENST00000625299 IL1RAPL2Q9NP60 686 aa17.76■□□□□ 0.43
PNKP-218ENST00000625299 DCP1AQ9NPI6 582 aaPredicted RBP17.76■□□□□ 0.43
PNKP-218ENST00000625299 TMEM39AQ9NV64 488 aa17.76■□□□□ 0.43
PNKP-218ENST00000625299 SWAP70Q9UH65 585 aa17.76■□□□□ 0.43
PNKP-218ENST00000625299 BAZ2AQ9UIF9 1905 aaKnown RBP17.76■□□□□ 0.43
PNKP-218ENST00000625299 TMEM265A0A087WTH1 108 aa17.75■□□□□ 0.43
PNKP-218ENST00000625299 GOLIM4O00461 696 aa17.75■□□□□ 0.43
PNKP-218ENST00000625299 SLC25A27O95847 323 aa17.75■□□□□ 0.43
PNKP-218ENST00000625299 TAL1P17542 331 aaPredicted RBP17.75■□□□□ 0.43
PNKP-218ENST00000625299 KCTD2Q14681 263 aa17.75■□□□□ 0.43
PNKP-218ENST00000625299 ERC1Q8IUD2 1116 aa17.75■□□□□ 0.43
PNKP-218ENST00000625299 TINF2Q9BSI4 451 aa17.75■□□□□ 0.43
PNKP-218ENST00000625299 ARMT1Q9H993 441 aa17.75■□□□□ 0.43
PNKP-218ENST00000625299 TMX2Q9Y320 296 aa17.75■□□□□ 0.43
PNKP-218ENST00000625299 TTC28Q96AY4 2481 aa17.75■□□□□ 0.43
PNKP-218ENST00000625299 KIAA0355O15063 1070 aa17.74■□□□□ 0.43
PNKP-218ENST00000625299 WDR46O15213 610 aaKnown RBP17.74■□□□□ 0.43
PNKP-218ENST00000625299 DNAJB2P25686 324 aa17.74■□□□□ 0.43
PNKP-218ENST00000625299 GRIN2CQ14957 1233 aa17.74■□□□□ 0.43
PNKP-218ENST00000625299 CEP85Q6P2H3 762 aa17.74■□□□□ 0.43
PNKP-218ENST00000625299 SIAH1Q8IUQ4 282 aa17.74■□□□□ 0.43
PNKP-218ENST00000625299 USP38Q8NB14 1042 aa17.74■□□□□ 0.43
PNKP-218ENST00000625299 FBXO28Q9NVF7 368 aa17.74■□□□□ 0.43
PNKP-218ENST00000625299 NRBP1Q9UHY1 535 aa17.74■□□□□ 0.43
PNKP-218ENST00000625299 APBB1O00213 710 aa17.73■□□□□ 0.43
PNKP-218ENST00000625299 AKR1A1P14550 325 aa17.73■□□□□ 0.43
PNKP-218ENST00000625299 STARD7Q9NQZ5 370 aa17.73■□□□□ 0.43
PNKP-218ENST00000625299 CNPY2Q9Y2B0 182 aa17.73■□□□□ 0.43
PNKP-218ENST00000625299 CYP2D7A0A087X1C5 515 aa17.72■□□□□ 0.43
PNKP-218ENST00000625299 PRKAB2O43741 272 aa17.72■□□□□ 0.43
PNKP-218ENST00000625299 RLBP1P12271 317 aa17.72■□□□□ 0.43
PNKP-218ENST00000625299 ZNF792Q3KQV3 632 aa17.72■□□□□ 0.43
PNKP-218ENST00000625299 RIOX2Q8IUF8 465 aa17.72■□□□□ 0.43
PNKP-218ENST00000625299 PPM1EQ8WY54 764 aa17.72■□□□□ 0.43
PNKP-218ENST00000625299 ROBO3Q96MS0 1386 aa17.71■□□□□ 0.43
PNKP-218ENST00000625299 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.71■□□□□ 0.43
PNKP-218ENST00000625299 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.71■□□□□ 0.43
PNKP-218ENST00000625299 TCRBV5S4A2TA0A5A2 114 aa17.71■□□□□ 0.43
PNKP-218ENST00000625299 DCDC2CA8MYV0 355 aa17.71■□□□□ 0.43
PNKP-218ENST00000625299 SMIM22K7EJ46 135 aa17.71■□□□□ 0.43
PNKP-218ENST00000625299 MBD4O95243 580 aa17.71■□□□□ 0.43
PNKP-218ENST00000625299 ZNF865P0CJ78 1059 aaPredicted RBP17.71■□□□□ 0.43
PNKP-218ENST00000625299 EEF2P13639 858 aaKnown RBP17.71■□□□□ 0.43
PNKP-218ENST00000625299 STAT3P40763 770 aa17.71■□□□□ 0.43
PNKP-218ENST00000625299 ACLYP53396 1101 aa17.71■□□□□ 0.43
PNKP-218ENST00000625299 FAAP100Q0VG06 881 aa17.71■□□□□ 0.43
PNKP-218ENST00000625299 SLFNL1Q499Z3 407 aa17.71■□□□□ 0.43
PNKP-218ENST00000625299 TJAP1Q5JTD0 557 aa17.71■□□□□ 0.43
PNKP-218ENST00000625299 AMOTL1Q8IY63 956 aa17.71■□□□□ 0.43
PNKP-218ENST00000625299 TIFAQ96CG3 184 aa17.71■□□□□ 0.43
PNKP-218ENST00000625299 ZNF576Q9H609 170 aa17.71■□□□□ 0.43
PNKP-218ENST00000625299 SYNRGQ9UMZ2 1314 aa17.71■□□□□ 0.42
PNKP-218ENST00000625299 VWA5AO00534 786 aa17.7■□□□□ 0.42
PNKP-218ENST00000625299 ADAMTS4O75173 837 aa17.7■□□□□ 0.42
PNKP-218ENST00000625299 CDK8P49336 464 aa17.7■□□□□ 0.42
PNKP-218ENST00000625299 FAM83BQ5T0W9 1011 aa17.7■□□□□ 0.42
PNKP-218ENST00000625299 RHPN1Q8TCX5 695 aa17.7■□□□□ 0.42
PNKP-218ENST00000625299 NUP133Q8WUM0 1156 aa17.7■□□□□ 0.42
PNKP-218ENST00000625299 GOPCQ9HD26 462 aa17.7■□□□□ 0.42
PNKP-218ENST00000625299 ZHX1Q9UKY1 873 aaPredicted RBP17.7■□□□□ 0.42
PNKP-218ENST00000625299 PPP1R9AQ9ULJ8 1098 aa17.7■□□□□ 0.42
PNKP-218ENST00000625299 DIS3Q9Y2L1 958 aaKnown RBP17.7■□□□□ 0.42
PNKP-218ENST00000625299 MUC3AQ02505 3323 aa17.69■□□□□ 0.42
PNKP-218ENST00000625299 SLC4A3P48751 1232 aa17.69■□□□□ 0.42
PNKP-218ENST00000625299 CCDC129Q6ZRS4 1044 aa17.69■□□□□ 0.42
PNKP-218ENST00000625299 CLASRPQ8N2M8 674 aaKnown RBP17.69■□□□□ 0.42
PNKP-218ENST00000625299 CCDC17Q96LX7 622 aa17.69■□□□□ 0.42
PNKP-218ENST00000625299 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.69■□□□□ 0.422e-8■□□□□ 10.9
PNKP-218ENST00000625299 ADAMTS5Q9UNA0 930 aa17.69■□□□□ 0.42
PNKP-218ENST00000625299 TIMP1P01033 207 aa17.68■□□□□ 0.42
PNKP-218ENST00000625299 IFIT2P09913 472 aaKnown RBP17.68■□□□□ 0.42
PNKP-218ENST00000625299 COPB2P35606 906 aa17.68■□□□□ 0.42
PNKP-218ENST00000625299 KCNA10Q16322 511 aa17.68■□□□□ 0.42
PNKP-218ENST00000625299 HSP90AB4PQ58FF6 505 aa17.68■□□□□ 0.42
PNKP-218ENST00000625299 C12orf60Q5U649 245 aa17.68■□□□□ 0.42
PNKP-218ENST00000625299 ANKRD33Q7Z3H0 272 aa17.68■□□□□ 0.42
PNKP-218ENST00000625299 TOX2Q96NM4 488 aa17.68■□□□□ 0.42
PNKP-218ENST00000625299 TSEN34Q9BSV6 310 aaKnown RBP17.68■□□□□ 0.42
PNKP-218ENST00000625299 ATP8A2Q9NTI2 1148 aa17.68■□□□□ 0.42
PNKP-218ENST00000625299 ZNF214Q9UL59 606 aaPredicted RBP17.68■□□□□ 0.42
PNKP-218ENST00000625299 FAM184BQ9ULE4 1060 aa17.68■□□□□ 0.42
PNKP-218ENST00000625299 MYADML2A6NDP7 307 aa17.67■□□□□ 0.42
PNKP-218ENST00000625299 MOXD2PA6NHM9 499 aa17.67■□□□□ 0.42
PNKP-218ENST00000625299 USP17L12C9JPN9 530 aa17.67■□□□□ 0.42
PNKP-218ENST00000625299 USP17L21D6R901 530 aa17.67■□□□□ 0.42
PNKP-218ENST00000625299 TNFRSF10AO00220 468 aa17.67■□□□□ 0.42
PNKP-218ENST00000625299 SNRNP48Q6IEG0 339 aaKnown RBP17.67■□□□□ 0.42
PNKP-218ENST00000625299 C16orf86Q6ZW13 317 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms