RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 SEC23AQ15436 765 aa17.89■□□□□ 0.45
CPSF1-213ENST00000620219 ZNF408Q9H9D4 720 aa17.89■□□□□ 0.45
CPSF1-213ENST00000620219 C4BP0C0L5 1744 aa17.89■□□□□ 0.45
CPSF1-213ENST00000620219 TMEM266Q2M3C6 531 aa17.89■□□□□ 0.45
CPSF1-213ENST00000620219 C16orf86Q6ZW13 317 aa17.89■□□□□ 0.45
CPSF1-213ENST00000620219 PCMTD1Q96MG8 357 aaPredicted RBP17.89■□□□□ 0.45
CPSF1-213ENST00000620219 LZTS2Q9BRK4 669 aa17.89■□□□□ 0.45
CPSF1-213ENST00000620219 CBX8Q9HC52 389 aa17.89■□□□□ 0.45
CPSF1-213ENST00000620219 STAT6P42226 847 aa17.89■□□□□ 0.45
CPSF1-213ENST00000620219 ADCY7P51828 1080 aa17.89■□□□□ 0.45
CPSF1-213ENST00000620219 RASSF7Q02833 373 aa17.89■□□□□ 0.45
CPSF1-213ENST00000620219 TTBK2Q6IQ55 1244 aa17.89■□□□□ 0.45
CPSF1-213ENST00000620219 SAMD7Q7Z3H4 446 aa17.89■□□□□ 0.45
CPSF1-213ENST00000620219 DDTLA6NHG4 134 aaPredicted RBP17.88■□□□□ 0.45
CPSF1-213ENST00000620219 SPDYE3A6NKU9 549 aa17.88■□□□□ 0.45
CPSF1-213ENST00000620219 WDHD1O75717 1129 aaPredicted RBP17.88■□□□□ 0.45
CPSF1-213ENST00000620219 MRPL12P52815 198 aaKnown RBP17.88■□□□□ 0.45
CPSF1-213ENST00000620219 PLS1Q14651 629 aa17.88■□□□□ 0.45
CPSF1-213ENST00000620219 NONOQ15233 471 aaKnown RBP eCLIP17.88■□□□□ 0.45
CPSF1-213ENST00000620219 DACT2Q5SW24 774 aa17.88■□□□□ 0.45
CPSF1-213ENST00000620219 CFBP00751 764 aa17.88■□□□□ 0.45
CPSF1-213ENST00000620219 RHBDL3P58872 404 aa17.88■□□□□ 0.45
CPSF1-213ENST00000620219 TMED8Q6PL24 325 aaPredicted RBP17.88■□□□□ 0.45
CPSF1-213ENST00000620219 FOXP4Q8IVH2 680 aaPredicted RBP17.88■□□□□ 0.45
CPSF1-213ENST00000620219 TMEM39BQ9GZU3 492 aa17.88■□□□□ 0.45
CPSF1-213ENST00000620219 FOXP1Q9H334 677 aaPredicted RBP17.88■□□□□ 0.45
CPSF1-213ENST00000620219 POLR3EQ9NVU0 708 aa17.88■□□□□ 0.45
CPSF1-213ENST00000620219 PDS5AQ29RF7 1337 aaKnown RBP17.88■□□□□ 0.45
CPSF1-213ENST00000620219 CUTAO60888 179 aa17.88■□□□□ 0.45
CPSF1-213ENST00000620219 BMP15O95972 392 aa17.88■□□□□ 0.45
CPSF1-213ENST00000620219 APOBEC3HQ6NTF7 200 aaKnown RBP17.88■□□□□ 0.45
CPSF1-213ENST00000620219 NBPF11Q86T75 865 aa17.88■□□□□ 0.45
CPSF1-213ENST00000620219 TUBGCP6Q96RT7 1819 aa17.87■□□□□ 0.45
CPSF1-213ENST00000620219 CXCL9Q07325 125 aa17.87■□□□□ 0.45
CPSF1-213ENST00000620219 EAPPQ56P03 285 aaPredicted RBP17.87■□□□□ 0.45
CPSF1-213ENST00000620219 IL17RBQ9NRM6 502 aa17.87■□□□□ 0.45
CPSF1-213ENST00000620219 MTMR4Q9NYA4 1195 aa17.87■□□□□ 0.45
CPSF1-213ENST00000620219 PCDHA1Q9Y5I3 950 aa17.87■□□□□ 0.45
CPSF1-213ENST00000620219 SPEF2Q9C093 1822 aa17.87■□□□□ 0.45
CPSF1-213ENST00000620219 PNOCQ13519 176 aa17.87■□□□□ 0.45
CPSF1-213ENST00000620219 TNFAIP1Q13829 316 aa17.87■□□□□ 0.45
CPSF1-213ENST00000620219 ILDR1Q86SU0 546 aaPredicted RBP17.87■□□□□ 0.45
CPSF1-213ENST00000620219 FAM217BQ9NTX9 383 aaPredicted RBP17.87■□□□□ 0.45
CPSF1-213ENST00000620219 PKD2L1Q9P0L9 805 aa17.87■□□□□ 0.45
CPSF1-213ENST00000620219 C15orf52Q6ZUT6 534 aaKnown RBP17.87■□□□□ 0.45
CPSF1-213ENST00000620219 SPON1Q9HCB6 807 aa17.87■□□□□ 0.45
CPSF1-213ENST00000620219 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.87■□□□□ 0.45
CPSF1-213ENST00000620219 STX17P56962 302 aa17.86■□□□□ 0.45
CPSF1-213ENST00000620219 NTRK3Q16288 839 aa17.86■□□□□ 0.45
CPSF1-213ENST00000620219 NOC3LQ8WTT2 800 aaKnown RBP17.86■□□□□ 0.45
CPSF1-213ENST00000620219 MTA3Q9BTC8 594 aa17.86■□□□□ 0.45
CPSF1-213ENST00000620219 SERTAD1Q9UHV2 236 aa17.86■□□□□ 0.45
CPSF1-213ENST00000620219 UBE2SQ16763 222 aa17.86■□□□□ 0.45
CPSF1-213ENST00000620219 C17orf53Q8N3J3 647 aaPredicted RBP17.86■□□□□ 0.45
CPSF1-213ENST00000620219 PICK1Q9NRD5 415 aa17.86■□□□□ 0.45
CPSF1-213ENST00000620219 TPM3P06753 285 aa17.86■□□□□ 0.45
CPSF1-213ENST00000620219 MICALL2Q8IY33 904 aa17.86■□□□□ 0.45
CPSF1-213ENST00000620219 MYO5AQ9Y4I1 1855 aaKnown RBP17.86■□□□□ 0.45
CPSF1-213ENST00000620219 RAB34Q9BZG1 259 aa17.85■□□□□ 0.45
CPSF1-213ENST00000620219 CSRNP2Q9H175 543 aa17.85■□□□□ 0.45
CPSF1-213ENST00000620219 PSTPIP2Q9H939 334 aa17.85■□□□□ 0.45
CPSF1-213ENST00000620219 MAPK8IP1Q9UQF2 711 aa17.85■□□□□ 0.45
CPSF1-213ENST00000620219 ANKRD20A12PQ8NF67 263 aa17.85■□□□□ 0.45
CPSF1-213ENST00000620219 CALML4Q96GE6 196 aa17.85■□□□□ 0.45
CPSF1-213ENST00000620219 MYO3BQ8WXR4 1341 aa17.85■□□□□ 0.45
CPSF1-213ENST00000620219 USP17L10C9JJH3 530 aa17.85■□□□□ 0.45
CPSF1-213ENST00000620219 GRM4Q14833 912 aa17.85■□□□□ 0.45
CPSF1-213ENST00000620219 PFKFB3Q16875 520 aaPredicted RBP17.85■□□□□ 0.45
CPSF1-213ENST00000620219 NBPF9Q3BBW0 867 aa17.85■□□□□ 0.45
CPSF1-213ENST00000620219 ASPRV1Q53RT3 343 aa17.85■□□□□ 0.45
CPSF1-213ENST00000620219 RRAGBQ5VZM2 374 aa17.85■□□□□ 0.45
CPSF1-213ENST00000620219 ZDHHC15Q96MV8 337 aa17.85■□□□□ 0.45
CPSF1-213ENST00000620219 ZNF70Q9UC06 446 aaPredicted RBP17.85■□□□□ 0.45
CPSF1-213ENST00000620219 EVCP57679 992 aa17.84■□□□□ 0.45
CPSF1-213ENST00000620219 SERPINA10Q9UK55 444 aa17.84■□□□□ 0.45
CPSF1-213ENST00000620219 PCDHA4Q9UN74 947 aa17.84■□□□□ 0.45
CPSF1-213ENST00000620219 RASA3Q14644 834 aa17.84■□□□□ 0.45
CPSF1-213ENST00000620219 WWC2Q6AWC2 1192 aa17.84■□□□□ 0.45
CPSF1-213ENST00000620219 C11orf57Q6ZUT1 292 aaPredicted RBP17.84■□□□□ 0.45
CPSF1-213ENST00000620219 GRAMD1CQ8IYS0 662 aa17.84■□□□□ 0.45
CPSF1-213ENST00000620219 CNOT7Q9UIV1 285 aaKnown RBP17.84■□□□□ 0.45
CPSF1-213ENST00000620219 STK36Q9NRP7 1315 aa17.84■□□□□ 0.45
CPSF1-213ENST00000620219 CMA1P23946 247 aa17.84■□□□□ 0.45
CPSF1-213ENST00000620219 R3HCC1Q9Y3T6 440 aaKnown RBP17.84■□□□□ 0.45
CPSF1-213ENST00000620219 GPATCH4Q5T3I0 446 aaKnown RBP17.84■□□□□ 0.45
CPSF1-213ENST00000620219 TMEM179Q6ZVK1 233 aa17.84■□□□□ 0.45
CPSF1-213ENST00000620219 KRT25Q7Z3Z0 450 aa17.84■□□□□ 0.45
CPSF1-213ENST00000620219 BLZF1Q9H2G9 400 aa17.84■□□□□ 0.45
CPSF1-213ENST00000620219 F5H6K3 240 aa17.83■□□□□ 0.45
CPSF1-213ENST00000620219 KLRC3Q07444 240 aa17.83■□□□□ 0.45
CPSF1-213ENST00000620219 VEGFAP15692 232 aaPredicted RBP17.83■□□□□ 0.44
CPSF1-213ENST00000620219 GMPSP49915 693 aaPredicted RBP17.83■□□□□ 0.44
CPSF1-213ENST00000620219 EPSTI1Q96J88 318 aa17.83■□□□□ 0.44
CPSF1-213ENST00000620219 ZFP91Q96JP5 570 aaPredicted RBP17.83■□□□□ 0.44
CPSF1-213ENST00000620219 DACH1Q9UI36 760 aa17.83■□□□□ 0.44
CPSF1-213ENST00000620219 SMTNL1A8MU46 457 aa17.83■□□□□ 0.44
CPSF1-213ENST00000620219 BMP3P12645 472 aa17.83■□□□□ 0.44
CPSF1-213ENST00000620219 UBXN2AP68543 259 aa17.83■□□□□ 0.44
CPSF1-213ENST00000620219 ZNF592Q92610 1267 aa17.83■□□□□ 0.44
CPSF1-213ENST00000620219 SH2D4AQ9H788 454 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms