RNA–Protein interactions for RNA: ENST00000617641.4

PCDHGC3-205, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 1 (best) BASIC

Gene PCDHGC3, Length 2,346 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-205ENST00000617641 STXBP3O00186 592 aa19.85■□□□□ 0.77
PCDHGC3-205ENST00000617641 BIN1O00499 593 aa19.85■□□□□ 0.77
PCDHGC3-205ENST00000617641 KCNA3P22001 575 aa19.85■□□□□ 0.77
PCDHGC3-205ENST00000617641 ZNF579Q8NAF0 562 aaKnown RBP19.85■□□□□ 0.77
PCDHGC3-205ENST00000617641 RASGRP4Q8TDF6 673 aa19.85■□□□□ 0.77
PCDHGC3-205ENST00000617641 BARHL2Q9NY43 387 aa19.85■□□□□ 0.77
PCDHGC3-205ENST00000617641 FAM13BQ9NYF5 915 aa19.85■□□□□ 0.77
PCDHGC3-205ENST00000617641 CLIP2Q9UDT6 1046 aa19.85■□□□□ 0.77
PCDHGC3-205ENST00000617641 DDTLA6NHG4 134 aaPredicted RBP19.85■□□□□ 0.77
PCDHGC3-205ENST00000617641 PDHBP11177 359 aa19.85■□□□□ 0.77
PCDHGC3-205ENST00000617641 IDI2Q9BXS1 227 aa19.85■□□□□ 0.77
PCDHGC3-205ENST00000617641 EHD4Q9H223 541 aa19.85■□□□□ 0.77
PCDHGC3-205ENST00000617641 DNAJC18Q9H819 358 aa19.85■□□□□ 0.77
PCDHGC3-205ENST00000617641 SIPA1L1O43166 1804 aa19.85■□□□□ 0.77
PCDHGC3-205ENST00000617641 FRMPD2Q68DX3 1309 aaPredicted RBP19.84■□□□□ 0.77
PCDHGC3-205ENST00000617641 FAM196BA6NMK8 535 aa19.84■□□□□ 0.77
PCDHGC3-205ENST00000617641 MPHOSPH10O00566 681 aaKnown RBP19.84■□□□□ 0.77
PCDHGC3-205ENST00000617641 ZRSR1Q15695 479 aaKnown RBP19.84■□□□□ 0.77
PCDHGC3-205ENST00000617641 DPCR1Q3MIW9 517 aa19.84■□□□□ 0.77
PCDHGC3-205ENST00000617641 KRBA2Q6ZNG9 492 aa19.84■□□□□ 0.77
PCDHGC3-205ENST00000617641 USP49Q70CQ1 688 aa19.84■□□□□ 0.77
PCDHGC3-205ENST00000617641 HOMER1Q86YM7 354 aa19.84■□□□□ 0.77
PCDHGC3-205ENST00000617641 CEP57L1Q8IYX8 460 aa19.84■□□□□ 0.77
PCDHGC3-205ENST00000617641 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.84■□□□□ 0.77
PCDHGC3-205ENST00000617641 MORC2Q9Y6X9 1032 aaPredicted RBP19.84■□□□□ 0.77
PCDHGC3-205ENST00000617641 PNOCQ13519 176 aa19.84■□□□□ 0.77
PCDHGC3-205ENST00000617641 SH3BP5LQ7L8J4 393 aa19.84■□□□□ 0.77
PCDHGC3-205ENST00000617641 METTL16Q86W50 562 aaKnown RBP19.84■□□□□ 0.77
PCDHGC3-205ENST00000617641 CNNM3Q8NE01 707 aa19.84■□□□□ 0.77
PCDHGC3-205ENST00000617641 UBA5Q9GZZ9 404 aa19.84■□□□□ 0.77
PCDHGC3-205ENST00000617641 VAT1LQ9HCJ6 419 aa19.84■□□□□ 0.77
PCDHGC3-205ENST00000617641 TTLL1O95922 423 aa19.83■□□□□ 0.76
PCDHGC3-205ENST00000617641 BMP15O95972 392 aa19.83■□□□□ 0.76
PCDHGC3-205ENST00000617641 ZSCAN29Q8IWY8 852 aaPredicted RBP19.83■□□□□ 0.76
PCDHGC3-205ENST00000617641 DHX40Q8IX18 779 aaKnown RBP19.83■□□□□ 0.76
PCDHGC3-205ENST00000617641 RTKN2Q8IZC4 609 aa19.83■□□□□ 0.76
PCDHGC3-205ENST00000617641 CCDC148Q8NFR7 591 aa19.83■□□□□ 0.76
PCDHGC3-205ENST00000617641 SLC16A10Q8TF71 515 aa19.83■□□□□ 0.76
PCDHGC3-205ENST00000617641 TDRD3Q9H7E2 651 aaKnown RBP19.83■□□□□ 0.76
PCDHGC3-205ENST00000617641 POLR2DO15514 142 aaKnown RBP19.82■□□□□ 0.76
PCDHGC3-205ENST00000617641 PTGDRQ13258 359 aa19.82■□□□□ 0.76
PCDHGC3-205ENST00000617641 CFAP100Q494V2 611 aa19.82■□□□□ 0.76
PCDHGC3-205ENST00000617641 RRP36Q96EU6 259 aaKnown RBP19.82■□□□□ 0.76
PCDHGC3-205ENST00000617641 DHX36Q9H2U1 1008 aaKnown RBP19.82■□□□□ 0.76
PCDHGC3-205ENST00000617641 ZNF277Q9NRM2 450 aaPredicted RBP19.82■□□□□ 0.76
PCDHGC3-205ENST00000617641 GOLGA6L19H0YKK7 550 aa19.82■□□□□ 0.76
PCDHGC3-205ENST00000617641 M0R2N6 131 aa19.82■□□□□ 0.76
PCDHGC3-205ENST00000617641 CLCN1P35523 988 aa19.82■□□□□ 0.76
PCDHGC3-205ENST00000617641 TRAPPC10P48553 1259 aa19.82■□□□□ 0.76
PCDHGC3-205ENST00000617641 NLRP12P59046 1061 aa19.82■□□□□ 0.76
PCDHGC3-205ENST00000617641 ISM2Q6H9L7 571 aa19.82■□□□□ 0.76
PCDHGC3-205ENST00000617641 PKNOX2Q96KN3 472 aa19.82■□□□□ 0.76
PCDHGC3-205ENST00000617641 PIGSQ96S52 555 aa19.82■□□□□ 0.76
PCDHGC3-205ENST00000617641 GREB1LQ9C091 1923 aaPredicted RBP19.82■□□□□ 0.76
PCDHGC3-205ENST00000617641 FOXN1O15353 648 aa19.81■□□□□ 0.76
PCDHGC3-205ENST00000617641 MSNP26038 577 aaKnown RBP19.81■□□□□ 0.76
PCDHGC3-205ENST00000617641 MCM7P33993 719 aa19.81■□□□□ 0.76
PCDHGC3-205ENST00000617641 ATP2C1P98194 919 aaPredicted RBP19.81■□□□□ 0.76
PCDHGC3-205ENST00000617641 GRIPAP1Q4V328 841 aa19.81■□□□□ 0.76
PCDHGC3-205ENST00000617641 AOPEPQ8N6M6 819 aa19.81■□□□□ 0.76
PCDHGC3-205ENST00000617641 PDILTQ8N807 584 aa19.81■□□□□ 0.76
PCDHGC3-205ENST00000617641 DAGLBQ8NCG7 672 aa19.81■□□□□ 0.76
PCDHGC3-205ENST00000617641 PSMD1Q99460 953 aa19.81■□□□□ 0.76
PCDHGC3-205ENST00000617641 TUBE1Q9UJT0 475 aa19.81■□□□□ 0.76
PCDHGC3-205ENST00000617641 PCDHA6Q9UN73 950 aa19.81■□□□□ 0.76
PCDHGC3-205ENST00000617641 PCDHA8Q9Y5H6 950 aa19.81■□□□□ 0.76
PCDHGC3-205ENST00000617641 COL4A5P29400 1685 aa19.81■□□□□ 0.76
PCDHGC3-205ENST00000617641 BECN2A8MW95 431 aa19.81■□□□□ 0.76
PCDHGC3-205ENST00000617641 RAD17O75943 681 aa19.81■□□□□ 0.76
PCDHGC3-205ENST00000617641 NAPAP54920 295 aa19.81■□□□□ 0.76
PCDHGC3-205ENST00000617641 ATP2B2Q01814 1243 aa19.81■□□□□ 0.76
PCDHGC3-205ENST00000617641 SHROOM1Q2M3G4 852 aaPredicted RBP19.81■□□□□ 0.76
PCDHGC3-205ENST00000617641 LARGE2Q8N3Y3 721 aa19.81■□□□□ 0.76
PCDHGC3-205ENST00000617641 FERMT2Q96AC1 680 aa19.81■□□□□ 0.76
PCDHGC3-205ENST00000617641 PRMT6Q96LA8 375 aaPredicted RBP19.81■□□□□ 0.76
PCDHGC3-205ENST00000617641 NAT10Q9H0A0 1025 aaKnown RBP19.81■□□□□ 0.76
PCDHGC3-205ENST00000617641 PI4KBQ9UBF8 816 aa19.81■□□□□ 0.76
PCDHGC3-205ENST00000617641 SEC63Q9UGP8 760 aaKnown RBP19.81■□□□□ 0.76
PCDHGC3-205ENST00000617641 SERTAD1Q9UHV2 236 aa19.81■□□□□ 0.76
PCDHGC3-205ENST00000617641 ZKSCAN5Q9Y2L8 839 aa19.81■□□□□ 0.76
PCDHGC3-205ENST00000617641 PSME4Q14997 1843 aa19.81■□□□□ 0.76
PCDHGC3-205ENST00000617641 SNHG28P0DPA3 235 aa19.8■□□□□ 0.76
PCDHGC3-205ENST00000617641 SMARCA1P28370 1054 aa19.8■□□□□ 0.76
PCDHGC3-205ENST00000617641 ASPRV1Q53RT3 343 aa19.8■□□□□ 0.76
PCDHGC3-205ENST00000617641 EPSTI1Q96J88 318 aa19.8■□□□□ 0.76
PCDHGC3-205ENST00000617641 GPCPD1Q9NPB8 672 aa19.8■□□□□ 0.76
PCDHGC3-205ENST00000617641 CCDC194A0A1B0GVG4 234 aa19.8■□□□□ 0.76
PCDHGC3-205ENST00000617641 GALNT17Q6IS24 598 aa19.8■□□□□ 0.76
PCDHGC3-205ENST00000617641 SPC24Q8NBT2 197 aa19.8■□□□□ 0.76
PCDHGC3-205ENST00000617641 CCDC17Q96LX7 622 aa19.8■□□□□ 0.76
PCDHGC3-205ENST00000617641 TRIM5Q9C035 493 aa19.8■□□□□ 0.76
PCDHGC3-205ENST00000617641 RIOX1Q9H6W3 641 aa19.8■□□□□ 0.76
PCDHGC3-205ENST00000617641 MYH4Q9Y623 1939 aa19.79■□□□□ 0.76
PCDHGC3-205ENST00000617641 NPM3O75607 178 aaKnown RBP19.79■□□□□ 0.76
PCDHGC3-205ENST00000617641 ZBTB7AO95365 584 aa19.79■□□□□ 0.76
PCDHGC3-205ENST00000617641 MDM2Q00987 491 aaPredicted RBP19.79■□□□□ 0.76
PCDHGC3-205ENST00000617641 FOXP4Q8IVH2 680 aaPredicted RBP19.79■□□□□ 0.76
PCDHGC3-205ENST00000617641 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.79■□□□□ 0.76
PCDHGC3-205ENST00000617641 A0A087X0B3 334 aa19.79■□□□□ 0.76
PCDHGC3-205ENST00000617641 VWA3AA6NCI4 1184 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms