RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 C12orf42Q96LP6 360 aa6.25□□□□□ -1.41
VRK3-226ENST00000602029 EHD4Q9H223 541 aa6.25□□□□□ -1.41
VRK3-226ENST00000602029 SEMA6BQ9H3T3 888 aa6.25□□□□□ -1.41
VRK3-226ENST00000602029 MROH8Q9H579 483 aa6.25□□□□□ -1.41
VRK3-226ENST00000602029 ANTXR1Q9H6X2 564 aa6.25□□□□□ -1.41
VRK3-226ENST00000602029 TMEM39AQ9NV64 488 aa6.25□□□□□ -1.41
VRK3-226ENST00000602029 ZHX1Q9UKY1 873 aaPredicted RBP6.25□□□□□ -1.41
VRK3-226ENST00000602029 WDFY4Q6ZS81 3184 aa6.25□□□□□ -1.41
VRK3-226ENST00000602029 PHIPQ8WWQ0 1821 aa6.25□□□□□ -1.41
VRK3-226ENST00000602029 ATAD5Q96QE3 1844 aa6.25□□□□□ -1.41
VRK3-226ENST00000602029 ZNF532Q9HCE3 1301 aa6.25□□□□□ -1.41
VRK3-226ENST00000602029 XIRP2A4UGR9 3374 aa6.24□□□□□ -1.41
VRK3-226ENST00000602029 DCDC2CA8MYV0 355 aa6.24□□□□□ -1.41
VRK3-226ENST00000602029 PGK2P07205 417 aa6.24□□□□□ -1.41
VRK3-226ENST00000602029 CLTBP09497 229 aa6.24□□□□□ -1.41
VRK3-226ENST00000602029 ATXN8OSP0DMR3 200 aa6.24□□□□□ -1.41
VRK3-226ENST00000602029 CYP2D6P10635 497 aa6.24□□□□□ -1.41
VRK3-226ENST00000602029 PDE6AP16499 860 aa6.24□□□□□ -1.41
VRK3-226ENST00000602029 SHMT1P34896 483 aa6.24□□□□□ -1.41
VRK3-226ENST00000602029 TLE2Q04725 743 aa6.24□□□□□ -1.41
VRK3-226ENST00000602029 FPGSQ05932 587 aa6.24□□□□□ -1.41
VRK3-226ENST00000602029 IKQ13123 557 aaPredicted RBP6.24□□□□□ -1.41
VRK3-226ENST00000602029 LRRC41Q15345 812 aa6.24□□□□□ -1.41
VRK3-226ENST00000602029 OLFML2BQ68BL8 750 aa6.24□□□□□ -1.41
VRK3-226ENST00000602029 TATDN1Q6P1N9 297 aa6.24□□□□□ -1.41
VRK3-226ENST00000602029 LBX2Q6XYB7 198 aa6.24□□□□□ -1.41
VRK3-226ENST00000602029 SH3RF1Q7Z6J0 888 aa6.24□□□□□ -1.41
VRK3-226ENST00000602029 CLASRPQ8N2M8 674 aaKnown RBP6.24□□□□□ -1.41
VRK3-226ENST00000602029 MICALL1Q8N3F8 863 aa6.24□□□□□ -1.41
VRK3-226ENST00000602029 MB21D1Q8N884 522 aa6.24□□□□□ -1.41
VRK3-226ENST00000602029 TRPV1Q8NER1 839 aa6.24□□□□□ -1.41
VRK3-226ENST00000602029 SSH3Q8TE77 659 aa6.24□□□□□ -1.41
VRK3-226ENST00000602029 EAF2Q96CJ1 260 aaPredicted RBP6.24□□□□□ -1.41
VRK3-226ENST00000602029 DDX11Q96FC9 970 aa6.24□□□□□ -1.41
VRK3-226ENST00000602029 ANP32EQ9BTT0 268 aa6.24□□□□□ -1.41
VRK3-226ENST00000602029 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.24□□□□□ -1.41
VRK3-226ENST00000602029 ARMT1Q9H993 441 aa6.24□□□□□ -1.41
VRK3-226ENST00000602029 SPC25Q9HBM1 224 aa6.24□□□□□ -1.41
VRK3-226ENST00000602029 GOPCQ9HD26 462 aa6.24□□□□□ -1.41
VRK3-226ENST00000602029 RBM19Q9Y4C8 960 aaKnown RBP6.24□□□□□ -1.41
VRK3-226ENST00000602029 TACC3Q9Y6A5 838 aa6.24□□□□□ -1.41
VRK3-226ENST00000602029 PLXNA1Q9UIW2 1896 aa6.24□□□□□ -1.41
VRK3-226ENST00000602029 WDR46O15213 610 aaKnown RBP6.23□□□□□ -1.41
VRK3-226ENST00000602029 COBLO75128 1261 aa6.23□□□□□ -1.41
VRK3-226ENST00000602029 HMMRO75330 724 aa6.23□□□□□ -1.41
VRK3-226ENST00000602029 MBD4O95243 580 aa6.23□□□□□ -1.41
VRK3-226ENST00000602029 SLC25A27O95847 323 aa6.23□□□□□ -1.41
VRK3-226ENST00000602029 HOXC6P09630 235 aa6.23□□□□□ -1.41
VRK3-226ENST00000602029 IGFBP4P22692 258 aa6.23□□□□□ -1.41
VRK3-226ENST00000602029 DSG3P32926 999 aa6.23□□□□□ -1.41
VRK3-226ENST00000602029 POLA2Q14181 598 aa6.23□□□□□ -1.41
VRK3-226ENST00000602029 CCDC174Q6PII3 467 aa6.23□□□□□ -1.41
VRK3-226ENST00000602029 METTL16Q86W50 562 aaKnown RBP6.23□□□□□ -1.41
VRK3-226ENST00000602029 TRMT2AQ8IZ69 625 aaKnown RBP6.23□□□□□ -1.41
VRK3-226ENST00000602029 CPXCR1Q8N123 301 aa6.23□□□□□ -1.41
VRK3-226ENST00000602029 LCORLQ8N3X6 602 aa6.23□□□□□ -1.41
VRK3-226ENST00000602029 SHCBP1Q8NEM2 672 aa6.23□□□□□ -1.41
VRK3-226ENST00000602029 NUP133Q8WUM0 1156 aa6.23□□□□□ -1.41
VRK3-226ENST00000602029 LENG1Q96BZ8 264 aaPredicted RBP6.23□□□□□ -1.41
VRK3-226ENST00000602029 CHMP4CQ96CF2 233 aa6.23□□□□□ -1.41
VRK3-226ENST00000602029 MAML3Q96JK9 1138 aa6.23□□□□□ -1.41
VRK3-226ENST00000602029 ZNF512BQ96KM6 892 aaPredicted RBP6.23□□□□□ -1.41
VRK3-226ENST00000602029 NECAB3Q96P71 396 aaPredicted RBP6.23□□□□□ -1.41
VRK3-226ENST00000602029 GAS2L1Q99501 681 aaPredicted RBP6.23□□□□□ -1.41
VRK3-226ENST00000602029 STARD7Q9NQZ5 370 aa6.23□□□□□ -1.41
VRK3-226ENST00000602029 PDLIM7Q9NR12 457 aa6.23□□□□□ -1.41
VRK3-226ENST00000602029 SWAP70Q9UH65 585 aa6.23□□□□□ -1.41
VRK3-226ENST00000602029 GBF1Q92538 1859 aa6.23□□□□□ -1.41
VRK3-226ENST00000602029 CYP2D7A0A087X1C5 515 aa6.22□□□□□ -1.41
VRK3-226ENST00000602029 A0A1W2PQ45 241 aaPredicted RBP6.22□□□□□ -1.41
VRK3-226ENST00000602029 A0A1W2PQY0 241 aa6.22□□□□□ -1.41
VRK3-226ENST00000602029 A0A1W2PRG0 241 aa6.22□□□□□ -1.41
VRK3-226ENST00000602029 TRIM43BA6NCK2 446 aa6.22□□□□□ -1.41
VRK3-226ENST00000602029 MINDY4BA8MYZ0 360 aa6.22□□□□□ -1.41
VRK3-226ENST00000602029 TLR3O15455 904 aaKnown RBP6.22□□□□□ -1.41
VRK3-226ENST00000602029 IGSF3O75054 1194 aa6.22□□□□□ -1.41
VRK3-226ENST00000602029 APPP05067 770 aa6.22□□□□□ -1.41
VRK3-226ENST00000602029 C6orf222P0C671 652 aaPredicted RBP6.22□□□□□ -1.41
VRK3-226ENST00000602029 EEF2P13639 858 aaKnown RBP6.22□□□□□ -1.41
VRK3-226ENST00000602029 AKR1A1P14550 325 aa6.22□□□□□ -1.41
VRK3-226ENST00000602029 AKR1B1P15121 316 aa6.22□□□□□ -1.41
VRK3-226ENST00000602029 DNAJB2P25686 324 aa6.22□□□□□ -1.41
VRK3-226ENST00000602029 STAT3P40763 770 aa6.22□□□□□ -1.41
VRK3-226ENST00000602029 SMAD3P84022 425 aaKnown RBP6.22□□□□□ -1.41
VRK3-226ENST00000602029 SKIV2LQ15477 1246 aaKnown RBP6.22□□□□□ -1.41
VRK3-226ENST00000602029 CCDC85BQ15834 202 aaPredicted RBP6.22□□□□□ -1.41
VRK3-226ENST00000602029 FAM83BQ5T0W9 1011 aa6.22□□□□□ -1.41
VRK3-226ENST00000602029 SNRNP48Q6IEG0 339 aaKnown RBP6.22□□□□□ -1.41
VRK3-226ENST00000602029 POTEEQ6S8J3 1075 aa6.22□□□□□ -1.41
VRK3-226ENST00000602029 PANK1Q8TE04 598 aa6.22□□□□□ -1.41
VRK3-226ENST00000602029 TRIM43Q96BQ3 446 aaPredicted RBP6.22□□□□□ -1.41
VRK3-226ENST00000602029 CCDC17Q96LX7 622 aa6.22□□□□□ -1.41
VRK3-226ENST00000602029 RIOK1Q9BRS2 568 aaKnown RBP6.22□□□□□ -1.41
VRK3-226ENST00000602029 TINF2Q9BSI4 451 aa6.22□□□□□ -1.41
VRK3-226ENST00000602029 PPP1R12CQ9BZL4 782 aa6.22□□□□□ -1.41
VRK3-226ENST00000602029 BOLA2Q9H3K6 86 aa6.22□□□□□ -1.41
VRK3-226ENST00000602029 VCPKMTQ9H867 229 aa6.22□□□□□ -1.41
VRK3-226ENST00000602029 MKNK2Q9HBH9 465 aa6.22□□□□□ -1.41
VRK3-226ENST00000602029 DCP1AQ9NPI6 582 aaPredicted RBP6.22□□□□□ -1.41
VRK3-226ENST00000602029 HOMER2Q9NSB8 354 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms