RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 GRK4P32298 578 aa22.82■■□□□ 1.24
UPF1-212ENST00000601689 FLT3LGP49771 235 aa22.82■■□□□ 1.24
UPF1-212ENST00000601689 IRF5Q13568 498 aa22.82■■□□□ 1.24
UPF1-212ENST00000601689 PLS1Q14651 629 aa22.82■■□□□ 1.24
UPF1-212ENST00000601689 LRRC47Q8N1G4 583 aaKnown RBP22.82■■□□□ 1.24
UPF1-212ENST00000601689 FEM1BQ9UK73 627 aa22.82■■□□□ 1.24
UPF1-212ENST00000601689 SLC1A4P43007 532 aa22.81■■□□□ 1.24
UPF1-212ENST00000601689 CAP1Q01518 475 aa22.81■■□□□ 1.24
UPF1-212ENST00000601689 IKQ13123 557 aaPredicted RBP22.81■■□□□ 1.24
UPF1-212ENST00000601689 KIAA1755Q5JYT7 1200 aa22.81■■□□□ 1.24
UPF1-212ENST00000601689 PLEKHH3Q7Z736 793 aa22.81■■□□□ 1.24
UPF1-212ENST00000601689 PRPF38AQ8NAV1 312 aaKnown RBP22.81■■□□□ 1.24
UPF1-212ENST00000601689 ARMC5Q96C12 935 aa22.81■■□□□ 1.24
UPF1-212ENST00000601689 TOP1P11387 765 aaKnown RBP22.8■■□□□ 1.24
UPF1-212ENST00000601689 BMP3P12645 472 aa22.8■■□□□ 1.24
UPF1-212ENST00000601689 COPB2P35606 906 aa22.8■■□□□ 1.24
UPF1-212ENST00000601689 Q3C1V9 767 aa22.8■■□□□ 1.24
UPF1-212ENST00000601689 PXYLP1Q8TE99 480 aa22.8■■□□□ 1.24
UPF1-212ENST00000601689 CHURC1Q8WUH1 139 aa22.8■■□□□ 1.24
UPF1-212ENST00000601689 SLF1Q9BQI6 1058 aa22.8■■□□□ 1.24
UPF1-212ENST00000601689 PPP1R9AQ9ULJ8 1098 aa22.8■■□□□ 1.24
UPF1-212ENST00000601689 ADCY3O60266 1144 aa22.79■■□□□ 1.24
UPF1-212ENST00000601689 ZBED4O75132 1171 aa22.79■■□□□ 1.24
UPF1-212ENST00000601689 SLC25A27O95847 323 aa22.79■■□□□ 1.24
UPF1-212ENST00000601689 FDX1P10109 184 aa22.79■■□□□ 1.24
UPF1-212ENST00000601689 TBC1D10CQ8IV04 446 aa22.79■■□□□ 1.24
UPF1-212ENST00000601689 TRMT44Q8IYL2 757 aaKnown RBP22.79■■□□□ 1.24
UPF1-212ENST00000601689 ATG4CQ96DT6 458 aa22.79■■□□□ 1.24
UPF1-212ENST00000601689 SPATC1LQ9H0A9 340 aa22.79■■□□□ 1.24
UPF1-212ENST00000601689 IL17RBQ9NRM6 502 aa22.79■■□□□ 1.24
UPF1-212ENST00000601689 GABRQQ9UN88 632 aa22.79■■□□□ 1.24
UPF1-212ENST00000601689 CDC45O75419 566 aa22.78■■□□□ 1.24
UPF1-212ENST00000601689 STAT2P52630 851 aa22.78■■□□□ 1.24
UPF1-212ENST00000601689 GPR142Q7Z601 462 aa22.78■■□□□ 1.24
UPF1-212ENST00000601689 RALYLQ86SE5 291 aaKnown RBP22.78■■□□□ 1.24
UPF1-212ENST00000601689 FAM160B2Q86V87 743 aa22.78■■□□□ 1.24
UPF1-212ENST00000601689 GMCL1Q96IK5 515 aa22.78■■□□□ 1.24
UPF1-212ENST00000601689 UBAC1Q9BSL1 405 aa22.78■■□□□ 1.24
UPF1-212ENST00000601689 MROH8Q9H579 483 aa22.78■■□□□ 1.24
UPF1-212ENST00000601689 SLC5A4Q9NY91 659 aa22.78■■□□□ 1.24
UPF1-212ENST00000601689 BTBD7Q9P203 1132 aa22.78■■□□□ 1.24
UPF1-212ENST00000601689 STRNO43815 780 aa22.77■■□□□ 1.24
UPF1-212ENST00000601689 NMT2O60551 498 aa22.77■■□□□ 1.24
UPF1-212ENST00000601689 KDM4AO75164 1064 aa22.77■■□□□ 1.24
UPF1-212ENST00000601689 RGS2P41220 211 aa22.77■■□□□ 1.24
UPF1-212ENST00000601689 NCAPG2Q86XI2 1143 aa22.77■■□□□ 1.24
UPF1-212ENST00000601689 DGKHQ86XP1 1220 aa22.77■■□□□ 1.24
UPF1-212ENST00000601689 SHCBP1Q8NEM2 672 aa22.77■■□□□ 1.24
UPF1-212ENST00000601689 SH3TC2Q8TF17 1288 aa22.77■■□□□ 1.24
UPF1-212ENST00000601689 KIFC2Q96AC6 838 aa22.77■■□□□ 1.24
UPF1-212ENST00000601689 ZNF333Q96JL9 665 aa22.77■■□□□ 1.24
UPF1-212ENST00000601689 NUP88Q99567 741 aaPredicted RBP22.77■■□□□ 1.24
UPF1-212ENST00000601689 ESYT1Q9BSJ8 1104 aa22.77■■□□□ 1.24
UPF1-212ENST00000601689 ERICH2A1L162 156 aa22.76■■□□□ 1.23
UPF1-212ENST00000601689 B4E1Z4 1266 aa22.76■■□□□ 1.23
UPF1-212ENST00000601689 VWA5AO00534 786 aa22.76■■□□□ 1.23
UPF1-212ENST00000601689 CNMDO75829 334 aa22.76■■□□□ 1.23
UPF1-212ENST00000601689 MCCP23508 829 aa22.76■■□□□ 1.23
UPF1-212ENST00000601689 DCAF4Q8WV16 495 aa22.76■■□□□ 1.23
UPF1-212ENST00000601689 MAP4K1Q92918 833 aa22.76■■□□□ 1.23
UPF1-212ENST00000601689 PORCNQ9H237 461 aa22.76■■□□□ 1.23
UPF1-212ENST00000601689 IL25Q9H293 177 aa22.76■■□□□ 1.23
UPF1-212ENST00000601689 ANO2Q9NQ90 1003 aa22.76■■□□□ 1.23
UPF1-212ENST00000601689 FBXO28Q9NVF7 368 aa22.76■■□□□ 1.23
UPF1-212ENST00000601689 MTMR7Q9Y216 660 aa22.76■■□□□ 1.23
UPF1-212ENST00000601689 NEDD4P46934 1319 aa22.76■■□□□ 1.23
UPF1-212ENST00000601689 PARP14Q460N5 1801 aa22.75■■□□□ 1.23
UPF1-212ENST00000601689 RLFQ13129 1914 aa22.75■■□□□ 1.23
UPF1-212ENST00000601689 TMEM232C9JQI7 657 aa22.75■■□□□ 1.23
UPF1-212ENST00000601689 STAT3P40763 770 aa22.75■■□□□ 1.23
UPF1-212ENST00000601689 NOVP48745 357 aa22.75■■□□□ 1.23
UPF1-212ENST00000601689 PTH1RQ03431 593 aa22.75■■□□□ 1.23
UPF1-212ENST00000601689 SART3Q15020 963 aaKnown RBP22.75■■□□□ 1.23
UPF1-212ENST00000601689 CCDC96Q2M329 555 aa22.75■■□□□ 1.23
UPF1-212ENST00000601689 RCSD1Q6JBY9 416 aa22.75■■□□□ 1.23
UPF1-212ENST00000601689 NCOA7Q8NI08 942 aa22.75■■□□□ 1.23
UPF1-212ENST00000601689 MOV10L1Q9BXT6 1211 aaKnown RBP22.75■■□□□ 1.23
UPF1-212ENST00000601689 NBPF3Q9H094 633 aa22.75■■□□□ 1.23
UPF1-212ENST00000601689 ADAMTS5Q9UNA0 930 aa22.75■■□□□ 1.23
UPF1-212ENST00000601689 TACC3Q9Y6A5 838 aa22.75■■□□□ 1.23
UPF1-212ENST00000601689 SLC15A5A6NIM6 579 aa22.74■■□□□ 1.23
UPF1-212ENST00000601689 PEX10O60683 326 aa22.74■■□□□ 1.23
UPF1-212ENST00000601689 XRCC5P13010 732 aaKnown RBP22.74■■□□□ 1.23
UPF1-212ENST00000601689 CYP2B6P20813 491 aa22.74■■□□□ 1.23
UPF1-212ENST00000601689 SOX10P56693 466 aa22.74■■□□□ 1.23
UPF1-212ENST00000601689 RNF20Q5VTR2 975 aa22.74■■□□□ 1.23
UPF1-212ENST00000601689 TMEM47Q9BQJ4 181 aa22.74■■□□□ 1.23
UPF1-212ENST00000601689 KAT14Q9H8E8 782 aa22.74■■□□□ 1.23
UPF1-212ENST00000601689 GJD2Q9UKL4 321 aa22.74■■□□□ 1.23
UPF1-212ENST00000601689 RBM8AQ9Y5S9 174 aaKnown RBP22.74■■□□□ 1.23
UPF1-212ENST00000601689 COL11A1P12107 1806 aaPredicted RBP22.73■■□□□ 1.23
UPF1-212ENST00000601689 PLA2G6O60733 806 aa22.73■■□□□ 1.23
UPF1-212ENST00000601689 ERCC3P19447 782 aa22.73■■□□□ 1.23
UPF1-212ENST00000601689 PTPREP23469 700 aa22.73■■□□□ 1.23
UPF1-212ENST00000601689 MAP2K5Q13163 448 aa22.73■■□□□ 1.23
UPF1-212ENST00000601689 TMEM132BQ14DG7 1078 aa22.73■■□□□ 1.23
UPF1-212ENST00000601689 DPP9Q86TI2 863 aa22.73■■□□□ 1.23
UPF1-212ENST00000601689 SKAP1Q86WV1 359 aa22.73■■□□□ 1.23
UPF1-212ENST00000601689 NKX2-3Q8TAU0 364 aa22.73■■□□□ 1.23
UPF1-212ENST00000601689 ZSCAN10Q96SZ4 725 aaPredicted RBP22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms