RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 COPB1P53618 953 aaKnown RBP20.66■□□□□ 0.9
UPF1-210ENST00000600689 INTS5Q6P9B9 1019 aaKnown RBP20.66■□□□□ 0.9
UPF1-210ENST00000600689 CYP26C1Q6V0L0 522 aa20.66■□□□□ 0.9
UPF1-210ENST00000600689 MARCH10Q8NA82 808 aaPredicted RBP20.66■□□□□ 0.9
UPF1-210ENST00000600689 PCMTD1Q96MG8 357 aaPredicted RBP20.66■□□□□ 0.9
UPF1-210ENST00000600689 EPN1Q9Y6I3 576 aaPredicted RBP20.66■□□□□ 0.9
UPF1-210ENST00000600689 SLC4A4Q9Y6R1 1079 aa20.66■□□□□ 0.9
UPF1-210ENST00000600689 BAZ2BQ9UIF8 2168 aaKnown RBP20.66■□□□□ 0.9
UPF1-210ENST00000600689 SYF2O95926 243 aaKnown RBP20.66■□□□□ 0.9
UPF1-210ENST00000600689 ZNF34Q8IZ26 560 aa20.66■□□□□ 0.9
UPF1-210ENST00000600689 JADE2Q9NQC1 790 aa20.66■□□□□ 0.9
UPF1-210ENST00000600689 DUSP10Q9Y6W6 482 aa20.66■□□□□ 0.9
UPF1-210ENST00000600689 PDE8BO95263 885 aa20.65■□□□□ 0.9
UPF1-210ENST00000600689 PPARAQ07869 468 aa20.65■□□□□ 0.9
UPF1-210ENST00000600689 AKNAD1Q5T1N1 836 aa20.65■□□□□ 0.9
UPF1-210ENST00000600689 SHISA4Q96DD7 197 aa20.65■□□□□ 0.9
UPF1-210ENST00000600689 CTAGE1Q96RT6 745 aa20.65■□□□□ 0.9
UPF1-210ENST00000600689 UBAC1Q9BSL1 405 aa20.65■□□□□ 0.9
UPF1-210ENST00000600689 CEP131Q9UPN4 1083 aa20.65■□□□□ 0.9
UPF1-210ENST00000600689 MYO5AQ9Y4I1 1855 aaKnown RBP20.65■□□□□ 0.9
UPF1-210ENST00000600689 DEXIO95424 95 aa20.65■□□□□ 0.9
UPF1-210ENST00000600689 PBX1P40424 430 aa20.65■□□□□ 0.9
UPF1-210ENST00000600689 CRKLP46109 303 aaKnown RBP20.65■□□□□ 0.9
UPF1-210ENST00000600689 CYP27A1Q02318 531 aa20.65■□□□□ 0.9
UPF1-210ENST00000600689 C2orf54Q08AI8 447 aa20.65■□□□□ 0.9
UPF1-210ENST00000600689 STIM1Q13586 685 aa20.65■□□□□ 0.9
UPF1-210ENST00000600689 SLC4A8Q2Y0W8 1093 aa20.65■□□□□ 0.9
UPF1-210ENST00000600689 ICE2Q659A1 982 aa20.65■□□□□ 0.9
UPF1-210ENST00000600689 FANCBQ8NB91 859 aa20.65■□□□□ 0.9
UPF1-210ENST00000600689 NELFBQ8WX92 580 aa20.65■□□□□ 0.9
UPF1-210ENST00000600689 FOXP1Q9H334 677 aaPredicted RBP20.65■□□□□ 0.9
UPF1-210ENST00000600689 EFCC1Q9HA90 598 aa20.65■□□□□ 0.9
UPF1-210ENST00000600689 REXO2Q9Y3B8 237 aaKnown RBP20.65■□□□□ 0.9
UPF1-210ENST00000600689 MYH3P11055 1940 aa20.65■□□□□ 0.9
UPF1-210ENST00000600689 KCNJ18B7U540 433 aa20.64■□□□□ 0.9
UPF1-210ENST00000600689 ERCC3P19447 782 aa20.64■□□□□ 0.9
UPF1-210ENST00000600689 MCM7P33993 719 aa20.64■□□□□ 0.9
UPF1-210ENST00000600689 KCNJ12Q14500 433 aa20.64■□□□□ 0.9
UPF1-210ENST00000600689 CDKAL1Q5VV42 579 aa20.64■□□□□ 0.9
UPF1-210ENST00000600689 SGMS1Q86VZ5 419 aa20.64■□□□□ 0.9
UPF1-210ENST00000600689 ZNF654Q8IZM8 581 aa20.64■□□□□ 0.9
UPF1-210ENST00000600689 SDR42E1Q8WUS8 393 aa20.64■□□□□ 0.9
UPF1-210ENST00000600689 SPATA31A1Q5TZJ5 1347 aa20.64■□□□□ 0.9
UPF1-210ENST00000600689 TTC26A0AVF1 554 aa20.64■□□□□ 0.89
UPF1-210ENST00000600689 EIF5P55010 431 aaKnown RBP20.64■□□□□ 0.89
UPF1-210ENST00000600689 ITPK1Q13572 414 aa20.64■□□□□ 0.89
UPF1-210ENST00000600689 LCORLQ8N3X6 602 aa20.64■□□□□ 0.89
UPF1-210ENST00000600689 ANKRD36CQ5JPF3 1778 aa20.64■□□□□ 0.89
UPF1-210ENST00000600689 SPEF2Q9C093 1822 aa20.64■□□□□ 0.89
UPF1-210ENST00000600689 AKAP11Q9UKA4 1901 aa20.64■□□□□ 0.89
UPF1-210ENST00000600689 ERVV-1B6SEH8 477 aa20.64■□□□□ 0.89
UPF1-210ENST00000600689 NDUFA10O95299 355 aa20.64■□□□□ 0.89
UPF1-210ENST00000600689 DNA2P51530 1060 aa20.64■□□□□ 0.89
UPF1-210ENST00000600689 IQUBQ8NA54 791 aa20.64■□□□□ 0.89
UPF1-210ENST00000600689 SMARCAL1Q9NZC9 954 aa20.64■□□□□ 0.89
UPF1-210ENST00000600689 MTMR7Q9Y216 660 aa20.64■□□□□ 0.89
UPF1-210ENST00000600689 CYP2D7A0A087X1C5 515 aa20.63■□□□□ 0.89
UPF1-210ENST00000600689 KCNQ2O43526 872 aa20.63■□□□□ 0.89
UPF1-210ENST00000600689 SMCR8Q8TEV9 937 aaPredicted RBP20.63■□□□□ 0.89
UPF1-210ENST00000600689 SAMM50Q9Y512 469 aa20.63■□□□□ 0.89
UPF1-210ENST00000600689 PLEKHA8P1O95397 391 aa20.63■□□□□ 0.89
UPF1-210ENST00000600689 KCNQ4P56696 695 aa20.63■□□□□ 0.89
UPF1-210ENST00000600689 PTGDRQ13258 359 aa20.63■□□□□ 0.89
UPF1-210ENST00000600689 EZH2Q15910 746 aaKnown RBP20.63■□□□□ 0.89
UPF1-210ENST00000600689 HPCAL4Q9UM19 191 aa20.63■□□□□ 0.89
UPF1-210ENST00000600689 SAR1BQ9Y6B6 198 aa20.63■□□□□ 0.89
UPF1-210ENST00000600689 ANKRD20A12PQ8NF67 263 aa20.62■□□□□ 0.89
UPF1-210ENST00000600689 WDR19Q8NEZ3 1342 aa20.62■□□□□ 0.89
UPF1-210ENST00000600689 LOC102724428A0A0B4J2F2 783 aa20.62■□□□□ 0.89
UPF1-210ENST00000600689 PATL2C9JE40 543 aaKnown RBP20.62■□□□□ 0.89
UPF1-210ENST00000600689 LIFRP42702 1097 aa20.62■□□□□ 0.89
UPF1-210ENST00000600689 USP14P54578 494 aa20.62■□□□□ 0.89
UPF1-210ENST00000600689 SIK1P57059 783 aa20.62■□□□□ 0.89
UPF1-210ENST00000600689 SLC7A5Q01650 507 aa20.62■□□□□ 0.89
UPF1-210ENST00000600689 TTF1Q15361 905 aaPredicted RBP20.62■□□□□ 0.89
UPF1-210ENST00000600689 TSR1Q2NL82 804 aaKnown RBP20.62■□□□□ 0.89
UPF1-210ENST00000600689 CCDC87Q9NVE4 849 aa20.62■□□□□ 0.89
UPF1-210ENST00000600689 KLK7P49862 253 aa20.62■□□□□ 0.89
UPF1-210ENST00000600689 AMPD2Q01433 879 aa20.62■□□□□ 0.89
UPF1-210ENST00000600689 KAT14Q9H8E8 782 aa20.62■□□□□ 0.89
UPF1-210ENST00000600689 PLCH1Q4KWH8 1693 aa20.61■□□□□ 0.89
UPF1-210ENST00000600689 XDHP47989 1333 aa20.61■□□□□ 0.89
UPF1-210ENST00000600689 IBSPP21815 317 aaPredicted RBP20.61■□□□□ 0.89
UPF1-210ENST00000600689 PAK1Q13153 545 aa20.61■□□□□ 0.89
UPF1-210ENST00000600689 JAKMIP2Q96AA8 810 aa20.61■□□□□ 0.89
UPF1-210ENST00000600689 MKRN1Q9UHC7 482 aaKnown RBP20.61■□□□□ 0.89
UPF1-210ENST00000600689 GSG1L2A8MUP6 293 aa20.61■□□□□ 0.89
UPF1-210ENST00000600689 CORO7P57737 925 aa20.61■□□□□ 0.89
UPF1-210ENST00000600689 PIK3AP1Q6ZUJ8 805 aa20.61■□□□□ 0.89
UPF1-210ENST00000600689 SMIM5Q71RC9 77 aa20.61■□□□□ 0.89
UPF1-210ENST00000600689 SPATA20Q8TB22 786 aa20.61■□□□□ 0.89
UPF1-210ENST00000600689 LACRTQ9GZZ8 138 aa20.61■□□□□ 0.89
UPF1-210ENST00000600689 MED4Q9NPJ6 270 aa20.61■□□□□ 0.89
UPF1-210ENST00000600689 ABCF2Q9UG63 623 aa20.61■□□□□ 0.89
UPF1-210ENST00000600689 CXCR5P32302 372 aa20.6■□□□□ 0.89
UPF1-210ENST00000600689 UBE3CQ15386 1083 aa20.6■□□□□ 0.89
UPF1-210ENST00000600689 KCTD19Q17RG1 926 aaPredicted RBP20.6■□□□□ 0.89
UPF1-210ENST00000600689 SND1Q7KZF4 910 aaKnown RBP eCLIP20.6■□□□□ 0.89
UPF1-210ENST00000600689 RRP36Q96EU6 259 aaKnown RBP20.6■□□□□ 0.89
UPF1-210ENST00000600689 PDE2AO00408 941 aaPredicted RBP20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms