RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 HEATR3Q7Z4Q2 680 aa16.55■□□□□ 0.24
VRK3-217ENST00000599538 PODNQ7Z5L7 613 aa16.55■□□□□ 0.24
VRK3-217ENST00000599538 TEKT1Q969V4 418 aa16.55■□□□□ 0.24
VRK3-217ENST00000599538 CLIP2Q9UDT6 1046 aa16.55■□□□□ 0.24
VRK3-217ENST00000599538 USP17L5A8MUK1 530 aa16.54■□□□□ 0.24
VRK3-217ENST00000599538 STXBP3O00186 592 aa16.54■□□□□ 0.24
VRK3-217ENST00000599538 ECE2O60344 883 aa16.54■□□□□ 0.24
VRK3-217ENST00000599538 OFD1O75665 1012 aa16.54■□□□□ 0.24
VRK3-217ENST00000599538 MCM7P33993 719 aa16.54■□□□□ 0.24
VRK3-217ENST00000599538 KIAA2012Q0VF49 1180 aa16.54■□□□□ 0.24
VRK3-217ENST00000599538 LRMPQ12912 555 aa16.54■□□□□ 0.24
VRK3-217ENST00000599538 IL17AQ16552 155 aa16.54■□□□□ 0.24
VRK3-217ENST00000599538 HHIPL2Q6UWX4 724 aa16.54■□□□□ 0.24
VRK3-217ENST00000599538 C7orf43Q8WVR3 580 aa16.54■□□□□ 0.24
VRK3-217ENST00000599538 BPIFA3Q9BQP9 254 aa16.54■□□□□ 0.24
VRK3-217ENST00000599538 UBA5Q9GZZ9 404 aa16.54■□□□□ 0.24
VRK3-217ENST00000599538 OSBPL5Q9H0X9 879 aaPredicted RBP16.54■□□□□ 0.24
VRK3-217ENST00000599538 HSD3B7Q9H2F3 369 aa16.54■□□□□ 0.24
VRK3-217ENST00000599538 VWA3AA6NCI4 1184 aa16.54■□□□□ 0.24
VRK3-217ENST00000599538 TOP1P11387 765 aaKnown RBP16.54■□□□□ 0.24
VRK3-217ENST00000599538 ATP2C1P98194 919 aaPredicted RBP16.54■□□□□ 0.24
VRK3-217ENST00000599538 AOC3Q16853 763 aa16.54■□□□□ 0.24
VRK3-217ENST00000599538 HOMER1Q86YM7 354 aa16.54■□□□□ 0.24
VRK3-217ENST00000599538 LRRC47Q8N1G4 583 aaKnown RBP16.54■□□□□ 0.24
VRK3-217ENST00000599538 SYMPKQ92797 1274 aaKnown RBP16.54■□□□□ 0.24
VRK3-217ENST00000599538 VAT1LQ9HCJ6 419 aa16.54■□□□□ 0.24
VRK3-217ENST00000599538 MTMR4Q9NYA4 1195 aa16.54■□□□□ 0.24
VRK3-217ENST00000599538 PCDHA4Q9UN74 947 aa16.54■□□□□ 0.24
VRK3-217ENST00000599538 PARP1P09874 1014 aaKnown RBP16.53■□□□□ 0.24
VRK3-217ENST00000599538 ARID5BQ14865 1188 aa16.53■□□□□ 0.24
VRK3-217ENST00000599538 POSTNQ15063 836 aa16.53■□□□□ 0.24
VRK3-217ENST00000599538 DACT2Q5SW24 774 aa16.53■□□□□ 0.24
VRK3-217ENST00000599538 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.53■□□□□ 0.24
VRK3-217ENST00000599538 DHX58Q96C10 678 aa16.53■□□□□ 0.24
VRK3-217ENST00000599538 SH3GLB2Q9NR46 395 aa16.53■□□□□ 0.24
VRK3-217ENST00000599538 BARHL2Q9NY43 387 aa16.53■□□□□ 0.24
VRK3-217ENST00000599538 SERPINB13Q9UIV8 391 aa16.53■□□□□ 0.24
VRK3-217ENST00000599538 FRMPD2Q68DX3 1309 aaPredicted RBP16.53■□□□□ 0.24
VRK3-217ENST00000599538 FAM196BA6NMK8 535 aa16.52■□□□□ 0.24
VRK3-217ENST00000599538 GOLGA6L6A8MZA4 724 aa16.52■□□□□ 0.24
VRK3-217ENST00000599538 CALML3P27482 149 aa16.52■□□□□ 0.24
VRK3-217ENST00000599538 CASP1P29466 404 aa16.52■□□□□ 0.24
VRK3-217ENST00000599538 SHMT1P34896 483 aa16.52■□□□□ 0.24
VRK3-217ENST00000599538 TCP10Q12799 353 aa16.52■□□□□ 0.24
VRK3-217ENST00000599538 SHROOM1Q2M3G4 852 aaPredicted RBP16.52■□□□□ 0.24
VRK3-217ENST00000599538 PCDHA6Q9UN73 950 aa16.52■□□□□ 0.24
VRK3-217ENST00000599538 PCDHA8Q9Y5H6 950 aa16.52■□□□□ 0.24
VRK3-217ENST00000599538 MORC2Q9Y6X9 1032 aaPredicted RBP16.52■□□□□ 0.24
VRK3-217ENST00000599538 RGPD3A6NKT7 1758 aaPredicted RBP16.52■□□□□ 0.24
VRK3-217ENST00000599538 RGPD4Q7Z3J3 1758 aa16.52■□□□□ 0.24
VRK3-217ENST00000599538 IGKV6D-41A0A0C4DH26 115 aa16.52■□□□□ 0.23
VRK3-217ENST00000599538 PDHBP11177 359 aa16.52■□□□□ 0.23
VRK3-217ENST00000599538 MRFAP1L1Q96HT8 127 aa16.52■□□□□ 0.23
VRK3-217ENST00000599538 NAP1L5Q96NT1 182 aaPredicted RBP16.52■□□□□ 0.23
VRK3-217ENST00000599538 SPZ1Q9BXG8 430 aa16.52■□□□□ 0.23
VRK3-217ENST00000599538 DNAJC18Q9H819 358 aa16.52■□□□□ 0.23
VRK3-217ENST00000599538 MAN1B1Q9UKM7 699 aa16.52■□□□□ 0.23
VRK3-217ENST00000599538 MYH8P13535 1937 aa16.52■□□□□ 0.23
VRK3-217ENST00000599538 ZNF646O15015 1829 aaPredicted RBP16.52■□□□□ 0.23
VRK3-217ENST00000599538 PLIN4Q96Q06 1357 aa16.51■□□□□ 0.23
VRK3-217ENST00000599538 LMOD1P29536 600 aaPredicted RBP16.51■□□□□ 0.23
VRK3-217ENST00000599538 CDC25BP30305 580 aa16.51■□□□□ 0.23
VRK3-217ENST00000599538 STRIP1Q5VSL9 837 aa16.51■□□□□ 0.23
VRK3-217ENST00000599538 C4orf32Q8N8J7 132 aa16.51■□□□□ 0.23
VRK3-217ENST00000599538 ZDHHC15Q96MV8 337 aa16.51■□□□□ 0.23
VRK3-217ENST00000599538 PIGSQ96S52 555 aa16.51■□□□□ 0.23
VRK3-217ENST00000599538 STK32BQ9NY57 414 aa16.51■□□□□ 0.23
VRK3-217ENST00000599538 ATP1A3P13637 1013 aa16.51■□□□□ 0.23
VRK3-217ENST00000599538 SARSP49591 514 aaKnown RBP16.51■□□□□ 0.23
VRK3-217ENST00000599538 NOLC1Q14978 699 aaKnown RBP eCLIP16.51■□□□□ 0.23
VRK3-217ENST00000599538 INF2Q27J81 1249 aa16.51■□□□□ 0.23
VRK3-217ENST00000599538 ELOA2Q8IYF1 753 aaPredicted RBP16.51■□□□□ 0.23
VRK3-217ENST00000599538 KIAA1524Q8TCG1 905 aa16.51■□□□□ 0.23
VRK3-217ENST00000599538 CACTINQ8WUQ7 758 aaKnown RBP16.51■□□□□ 0.23
VRK3-217ENST00000599538 FERMT2Q96AC1 680 aa16.51■□□□□ 0.23
VRK3-217ENST00000599538 DDTLA6NHG4 134 aaPredicted RBP16.5■□□□□ 0.23
VRK3-217ENST00000599538 CDC25AP30304 524 aa16.5■□□□□ 0.23
VRK3-217ENST00000599538 AFMP43652 599 aa16.5■□□□□ 0.23
VRK3-217ENST00000599538 TRAPPC10P48553 1259 aa16.5■□□□□ 0.23
VRK3-217ENST00000599538 RBM5P52756 815 aaKnown RBP eCLIP16.5■□□□□ 0.23
VRK3-217ENST00000599538 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.5■□□□□ 0.23
VRK3-217ENST00000599538 C21orf2O43822 256 aa16.49■□□□□ 0.23
VRK3-217ENST00000599538 BMP15O95972 392 aa16.49■□□□□ 0.23
VRK3-217ENST00000599538 NT5DC1Q5TFE4 455 aa16.49■□□□□ 0.23
VRK3-217ENST00000599538 SH3BP5LQ7L8J4 393 aa16.49■□□□□ 0.23
VRK3-217ENST00000599538 DEFB132Q7Z7B7 95 aa16.49■□□□□ 0.23
VRK3-217ENST00000599538 STAMQ92783 540 aa16.49■□□□□ 0.23
VRK3-217ENST00000599538 CNKSR1Q969H4 720 aa16.49■□□□□ 0.23
VRK3-217ENST00000599538 LZTS2Q9BRK4 669 aa16.49■□□□□ 0.23
VRK3-217ENST00000599538 XPO4Q9C0E2 1151 aaKnown RBP16.49■□□□□ 0.23
VRK3-217ENST00000599538 TMEM60Q9H2L4 133 aa16.49■□□□□ 0.23
VRK3-217ENST00000599538 FAM198AQ9UFP1 575 aa16.49■□□□□ 0.23
VRK3-217ENST00000599538 YDJCA8MPS7 323 aa16.49■□□□□ 0.23
VRK3-217ENST00000599538 NAPAP54920 295 aa16.49■□□□□ 0.23
VRK3-217ENST00000599538 DAGLBQ8NCG7 672 aa16.49■□□□□ 0.23
VRK3-217ENST00000599538 IFNKQ9P0W0 207 aa16.49■□□□□ 0.23
VRK3-217ENST00000599538 SIPA1L1O43166 1804 aa16.49■□□□□ 0.23
VRK3-217ENST00000599538 CCDC194A0A1B0GVG4 234 aa16.48■□□□□ 0.23
VRK3-217ENST00000599538 IKBKBO14920 756 aa16.48■□□□□ 0.23
VRK3-217ENST00000599538 TPM3P06753 285 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms