RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 NKX2-3Q8TAU0 364 aa19.1■□□□□ 0.65
TRIM28-213ENST00000598355 RAET1EQ8TD07 263 aa19.1■□□□□ 0.65
TRIM28-213ENST00000598355 SOCS4Q8WXH5 440 aa19.1■□□□□ 0.65
TRIM28-213ENST00000598355 USP6NLQ92738 828 aa19.1■□□□□ 0.65
TRIM28-213ENST00000598355 ATG4CQ96DT6 458 aa19.1■□□□□ 0.65
TRIM28-213ENST00000598355 RNF41Q9H4P4 317 aaPredicted RBP19.1■□□□□ 0.65
TRIM28-213ENST00000598355 FBXO28Q9NVF7 368 aa19.1■□□□□ 0.65
TRIM28-213ENST00000598355 PPP1R9AQ9ULJ8 1098 aa19.1■□□□□ 0.65
TRIM28-213ENST00000598355 ZNF213O14771 459 aa19.09■□□□□ 0.65
TRIM28-213ENST00000598355 RANBP6O60518 1105 aaKnown RBP19.09■□□□□ 0.65
TRIM28-213ENST00000598355 NMT2O60551 498 aa19.09■□□□□ 0.65
TRIM28-213ENST00000598355 NEFLP07196 543 aa19.09■□□□□ 0.65
TRIM28-213ENST00000598355 CCNA1P78396 465 aa19.09■□□□□ 0.65
TRIM28-213ENST00000598355 MORN1Q5T089 497 aa19.09■□□□□ 0.65
TRIM28-213ENST00000598355 GPR142Q7Z601 462 aa19.09■□□□□ 0.65
TRIM28-213ENST00000598355 NBPF11Q86T75 865 aa19.09■□□□□ 0.65
TRIM28-213ENST00000598355 LRRC47Q8N1G4 583 aaKnown RBP19.09■□□□□ 0.65
TRIM28-213ENST00000598355 REPS2Q8NFH8 660 aa19.09■□□□□ 0.65
TRIM28-213ENST00000598355 SH3TC2Q8TF17 1288 aa19.09■□□□□ 0.65
TRIM28-213ENST00000598355 CTNNA3Q9UI47 895 aa19.09■□□□□ 0.65
TRIM28-213ENST00000598355 TNRC18O15417 2968 aaPredicted RBP19.08■□□□□ 0.65
TRIM28-213ENST00000598355 SOX10P56693 466 aa19.08■□□□□ 0.64
TRIM28-213ENST00000598355 ERICH6BQ5W0A0 696 aa19.08■□□□□ 0.64
TRIM28-213ENST00000598355 MFSD6Q6ZSS7 791 aa19.08■□□□□ 0.64
TRIM28-213ENST00000598355 SHCBP1Q8NEM2 672 aa19.08■□□□□ 0.64
TRIM28-213ENST00000598355 GMCL1Q96IK5 515 aa19.08■□□□□ 0.64
TRIM28-213ENST00000598355 NUP88Q99567 741 aaPredicted RBP19.08■□□□□ 0.64
TRIM28-213ENST00000598355 SPATC1LQ9H0A9 340 aa19.08■□□□□ 0.64
TRIM28-213ENST00000598355 FRMPD3Q5JV73 1810 aa19.08■□□□□ 0.64
TRIM28-213ENST00000598355 ADCY3O60266 1144 aa19.07■□□□□ 0.64
TRIM28-213ENST00000598355 CENPBP07199 599 aaPredicted RBP19.07■□□□□ 0.64
TRIM28-213ENST00000598355 PTH1RQ03431 593 aa19.07■□□□□ 0.64
TRIM28-213ENST00000598355 IMMTQ16891 758 aaKnown RBP19.07■□□□□ 0.64
TRIM28-213ENST00000598355 RCSD1Q6JBY9 416 aa19.07■□□□□ 0.64
TRIM28-213ENST00000598355 MOV10L1Q9BXT6 1211 aaKnown RBP19.07■□□□□ 0.64
TRIM28-213ENST00000598355 ZNF214Q9UL59 606 aaPredicted RBP19.07■□□□□ 0.64
TRIM28-213ENST00000598355 PDE4DIPQ5VU43 2346 aa19.06■□□□□ 0.64
TRIM28-213ENST00000598355 VWA5AO00534 786 aa19.06■□□□□ 0.64
TRIM28-213ENST00000598355 XRCC5P13010 732 aaKnown RBP19.06■□□□□ 0.64
TRIM28-213ENST00000598355 GRB14Q14449 540 aa19.06■□□□□ 0.64
TRIM28-213ENST00000598355 TMEM132BQ14DG7 1078 aa19.06■□□□□ 0.64
TRIM28-213ENST00000598355 PLEKHH3Q7Z736 793 aa19.06■□□□□ 0.64
TRIM28-213ENST00000598355 ESR2Q92731 530 aa19.06■□□□□ 0.64
TRIM28-213ENST00000598355 NUDT12Q9BQG2 462 aa19.06■□□□□ 0.64
TRIM28-213ENST00000598355 SLF1Q9BQI6 1058 aa19.06■□□□□ 0.64
TRIM28-213ENST00000598355 STX8Q9UNK0 236 aa19.06■□□□□ 0.64
TRIM28-213ENST00000598355 POTEFA5A3E0 1075 aa19.05■□□□□ 0.64
TRIM28-213ENST00000598355 PLA2G6O60733 806 aa19.05■□□□□ 0.64
TRIM28-213ENST00000598355 RRP12Q5JTH9 1297 aaKnown RBP19.05■□□□□ 0.64
TRIM28-213ENST00000598355 SLFN13Q68D06 897 aa19.05■□□□□ 0.64
TRIM28-213ENST00000598355 TOMM22Q9NS69 142 aa19.05■□□□□ 0.64
TRIM28-213ENST00000598355 SMCHD1A6NHR9 2005 aa19.05■□□□□ 0.64
TRIM28-213ENST00000598355 SLC15A5A6NIM6 579 aa19.04■□□□□ 0.64
TRIM28-213ENST00000598355 ATP2A1O14983 1001 aa19.04■□□□□ 0.64
TRIM28-213ENST00000598355 IGHA2P01877 340 aa19.04■□□□□ 0.64
TRIM28-213ENST00000598355 HOXC6P09630 235 aa19.04■□□□□ 0.64
TRIM28-213ENST00000598355 BMP3P12645 472 aa19.04■□□□□ 0.64
TRIM28-213ENST00000598355 ELNP15502 786 aa19.04■□□□□ 0.64
TRIM28-213ENST00000598355 PTPREP23469 700 aa19.04■□□□□ 0.64
TRIM28-213ENST00000598355 MTFR1Q15390 333 aa19.04■□□□□ 0.64
TRIM28-213ENST00000598355 RIOX2Q8IUF8 465 aa19.04■□□□□ 0.64
TRIM28-213ENST00000598355 PRPF38AQ8NAV1 312 aaKnown RBP19.04■□□□□ 0.64
TRIM28-213ENST00000598355 MAP4K1Q92918 833 aa19.04■□□□□ 0.64
TRIM28-213ENST00000598355 TTC14Q96N46 770 aa19.04■□□□□ 0.64
TRIM28-213ENST00000598355 APBA2Q99767 749 aa19.04■□□□□ 0.64
TRIM28-213ENST00000598355 ESYT1Q9BSJ8 1104 aa19.04■□□□□ 0.64
TRIM28-213ENST00000598355 FEM1BQ9UK73 627 aa19.04■□□□□ 0.64
TRIM28-213ENST00000598355 RAD21O60216 631 aa19.03■□□□□ 0.64
TRIM28-213ENST00000598355 HMGCRP04035 888 aa19.03■□□□□ 0.64
TRIM28-213ENST00000598355 INHAP05111 366 aa19.03■□□□□ 0.64
TRIM28-213ENST00000598355 CYP21A2P08686 494 aa19.03■□□□□ 0.64
TRIM28-213ENST00000598355 TOP1P11387 765 aaKnown RBP19.03■□□□□ 0.64
TRIM28-213ENST00000598355 ERCC3P19447 782 aa19.03■□□□□ 0.64
TRIM28-213ENST00000598355 MAP2K5Q13163 448 aa19.03■□□□□ 0.64
TRIM28-213ENST00000598355 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.03■□□□□ 0.64
TRIM28-213ENST00000598355 RASGRP2Q7LDG7 609 aa19.03■□□□□ 0.64
TRIM28-213ENST00000598355 TRIB2Q92519 343 aa19.03■□□□□ 0.64
TRIM28-213ENST00000598355 TMEM47Q9BQJ4 181 aa19.03■□□□□ 0.64
TRIM28-213ENST00000598355 MROH8Q9H579 483 aa19.03■□□□□ 0.64
TRIM28-213ENST00000598355 CNNM2Q9H8M5 875 aa19.03■□□□□ 0.64
TRIM28-213ENST00000598355 U3KPZ7 1027 aaPredicted RBP19.03■□□□□ 0.64
TRIM28-213ENST00000598355 B4E1Z4 1266 aa19.02■□□□□ 0.64
TRIM28-213ENST00000598355 KDM4AO75164 1064 aa19.02■□□□□ 0.64
TRIM28-213ENST00000598355 SLC25A27O95847 323 aa19.02■□□□□ 0.64
TRIM28-213ENST00000598355 SNHG28P0DPA3 235 aa19.02■□□□□ 0.64
TRIM28-213ENST00000598355 RGS2P41220 211 aa19.02■□□□□ 0.64
TRIM28-213ENST00000598355 STAT2P52630 851 aa19.02■□□□□ 0.64
TRIM28-213ENST00000598355 UBXN2AP68543 259 aa19.02■□□□□ 0.64
TRIM28-213ENST00000598355 MAP3K21Q5TCX8 1036 aa19.02■□□□□ 0.64
TRIM28-213ENST00000598355 DGKHQ86XP1 1220 aa19.02■□□□□ 0.64
TRIM28-213ENST00000598355 ABRAQ8N0Z2 381 aa19.02■□□□□ 0.64
TRIM28-213ENST00000598355 DCAF4Q8WV16 495 aa19.02■□□□□ 0.64
TRIM28-213ENST00000598355 ANKS1AQ92625 1134 aa19.02■□□□□ 0.64
TRIM28-213ENST00000598355 LSG1Q9H089 658 aaKnown RBP19.02■□□□□ 0.64
TRIM28-213ENST00000598355 SLC38A10Q9HBR0 1119 aa19.02■□□□□ 0.64
TRIM28-213ENST00000598355 LCTP09848 1927 aa19.02■□□□□ 0.63
TRIM28-213ENST00000598355 STRNO43815 780 aa19.01■□□□□ 0.63
TRIM28-213ENST00000598355 FDX1P10109 184 aa19.01■□□□□ 0.63
TRIM28-213ENST00000598355 COPB2P35606 906 aa19.01■□□□□ 0.63
TRIM28-213ENST00000598355 SLC1A4P43007 532 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms