RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 ZNF165P49910 485 aa19.56■□□□□ 0.72
SHKBP1-216ENST00000598201 NLRP5P59047 1200 aa19.56■□□□□ 0.72
SHKBP1-216ENST00000598201 ZNRF3Q9ULT6 936 aa19.56■□□□□ 0.72
SHKBP1-216ENST00000598201 PLIN4Q96Q06 1357 aa19.55■□□□□ 0.72
SHKBP1-216ENST00000598201 SHMT1P34896 483 aa19.55■□□□□ 0.72
SHKBP1-216ENST00000598201 SYKP43405 635 aa19.55■□□□□ 0.72
SHKBP1-216ENST00000598201 TYW1BQ6NUM6 668 aa19.55■□□□□ 0.72
SHKBP1-216ENST00000598201 USP17L2Q6R6M4 530 aa19.55■□□□□ 0.72
SHKBP1-216ENST00000598201 CLEC10AQ8IUN9 316 aa19.55■□□□□ 0.72
SHKBP1-216ENST00000598201 BRMS1Q9HCU9 246 aa19.55■□□□□ 0.72
SHKBP1-216ENST00000598201 KLRF2D3W0D1 207 aa19.55■□□□□ 0.72
SHKBP1-216ENST00000598201 RBM5P52756 815 aaKnown RBP eCLIP19.55■□□□□ 0.72
SHKBP1-216ENST00000598201 PLCB2Q00722 1185 aa19.55■□□□□ 0.72
SHKBP1-216ENST00000598201 STX1AQ16623 288 aa19.55■□□□□ 0.72
SHKBP1-216ENST00000598201 MTMR4Q9NYA4 1195 aa19.55■□□□□ 0.72
SHKBP1-216ENST00000598201 IGKV6D-41A0A0C4DH26 115 aa19.54■□□□□ 0.72
SHKBP1-216ENST00000598201 TRIM75PA6NK02 468 aa19.54■□□□□ 0.72
SHKBP1-216ENST00000598201 HDLBPQ00341 1268 aaKnown RBP19.54■□□□□ 0.72
SHKBP1-216ENST00000598201 KIAA1468Q9P260 1216 aa19.54■□□□□ 0.72
SHKBP1-216ENST00000598201 FZD9O00144 591 aa19.53■□□□□ 0.72
SHKBP1-216ENST00000598201 TCP10Q12799 353 aa19.53■□□□□ 0.72
SHKBP1-216ENST00000598201 WWC2Q6AWC2 1192 aa19.53■□□□□ 0.72
SHKBP1-216ENST00000598201 FAM198AQ9UFP1 575 aa19.53■□□□□ 0.72
SHKBP1-216ENST00000598201 SWAP70Q9UH65 585 aa19.53■□□□□ 0.72
SHKBP1-216ENST00000598201 DICER1Q9UPY3 1922 aaKnown RBP19.53■□□□□ 0.72
SHKBP1-216ENST00000598201 USP17L5A8MUK1 530 aa19.53■□□□□ 0.72
SHKBP1-216ENST00000598201 PARP1P09874 1014 aaKnown RBP19.53■□□□□ 0.72
SHKBP1-216ENST00000598201 EIF6P56537 245 aaKnown RBP19.53■□□□□ 0.72
SHKBP1-216ENST00000598201 HS1BP3Q53T59 392 aa19.53■□□□□ 0.72
SHKBP1-216ENST00000598201 TIGD1Q96MW7 591 aa19.53■□□□□ 0.72
SHKBP1-216ENST00000598201 SH3GLB2Q9NR46 395 aa19.53■□□□□ 0.72
SHKBP1-216ENST00000598201 KCNH3Q9ULD8 1083 aa19.53■□□□□ 0.72
SHKBP1-216ENST00000598201 CEP131Q9UPN4 1083 aa19.53■□□□□ 0.72
SHKBP1-216ENST00000598201 SRPRBQ9Y5M8 271 aaKnown RBP19.53■□□□□ 0.72
SHKBP1-216ENST00000598201 IQCB1Q15051 598 aa19.52■□□□□ 0.72
SHKBP1-216ENST00000598201 PIK3AP1Q6ZUJ8 805 aa19.52■□□□□ 0.72
SHKBP1-216ENST00000598201 LZTS2Q9BRK4 669 aa19.52■□□□□ 0.72
SHKBP1-216ENST00000598201 SPZ1Q9BXG8 430 aa19.52■□□□□ 0.72
SHKBP1-216ENST00000598201 DNAJC18Q9H819 358 aa19.52■□□□□ 0.72
SHKBP1-216ENST00000598201 SERPINA10Q9UK55 444 aa19.52■□□□□ 0.72
SHKBP1-216ENST00000598201 DDTLA6NHG4 134 aaPredicted RBP19.52■□□□□ 0.71
SHKBP1-216ENST00000598201 HLA-DOAP06340 250 aa19.52■□□□□ 0.71
SHKBP1-216ENST00000598201 ZNF174Q15697 407 aa19.52■□□□□ 0.71
SHKBP1-216ENST00000598201 SH3BP5LQ7L8J4 393 aa19.52■□□□□ 0.71
SHKBP1-216ENST00000598201 LRRC47Q8N1G4 583 aaKnown RBP19.52■□□□□ 0.71
SHKBP1-216ENST00000598201 IDI2Q9BXS1 227 aa19.52■□□□□ 0.71
SHKBP1-216ENST00000598201 STXBP3O00186 592 aa19.51■□□□□ 0.71
SHKBP1-216ENST00000598201 RAD17O75943 681 aa19.51■□□□□ 0.71
SHKBP1-216ENST00000598201 CAVIN2O95810 425 aa19.51■□□□□ 0.71
SHKBP1-216ENST00000598201 LONRF3Q496Y0 759 aa19.51■□□□□ 0.71
SHKBP1-216ENST00000598201 TTC38Q5R3I4 469 aa19.51■□□□□ 0.71
SHKBP1-216ENST00000598201 HEATR3Q7Z4Q2 680 aa19.51■□□□□ 0.71
SHKBP1-216ENST00000598201 BLIDQ8IZY5 108 aa19.51■□□□□ 0.71
SHKBP1-216ENST00000598201 ANO10Q9NW15 660 aa19.51■□□□□ 0.71
SHKBP1-216ENST00000598201 NOL7Q9UMY1 257 aaKnown RBP19.51■□□□□ 0.71
SHKBP1-216ENST00000598201 MYO3BQ8WXR4 1341 aa19.51■□□□□ 0.71
SHKBP1-216ENST00000598201 FAM196BA6NMK8 535 aa19.5■□□□□ 0.71
SHKBP1-216ENST00000598201 PDHBP11177 359 aa19.5■□□□□ 0.71
SHKBP1-216ENST00000598201 CALML3P27482 149 aa19.5■□□□□ 0.71
SHKBP1-216ENST00000598201 CXCL9Q07325 125 aa19.5■□□□□ 0.71
SHKBP1-216ENST00000598201 USP49Q70CQ1 688 aa19.5■□□□□ 0.71
SHKBP1-216ENST00000598201 ZNF579Q8NAF0 562 aaKnown RBP19.5■□□□□ 0.71
SHKBP1-216ENST00000598201 RASGRP4Q8TDF6 673 aa19.5■□□□□ 0.71
SHKBP1-216ENST00000598201 CSRNP2Q9H175 543 aa19.5■□□□□ 0.71
SHKBP1-216ENST00000598201 EHD4Q9H223 541 aa19.5■□□□□ 0.71
SHKBP1-216ENST00000598201 CLIP2Q9UDT6 1046 aa19.5■□□□□ 0.71
SHKBP1-216ENST00000598201 PCDHA4Q9UN74 947 aa19.5■□□□□ 0.71
SHKBP1-216ENST00000598201 ZSCAN30Q86W11 494 aa19.5■□□□□ 0.71
SHKBP1-216ENST00000598201 BARHL2Q9NY43 387 aa19.5■□□□□ 0.71
SHKBP1-216ENST00000598201 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.5■□□□□ 0.71
SHKBP1-216ENST00000598201 MORC2Q9Y6X9 1032 aaPredicted RBP19.5■□□□□ 0.71
SHKBP1-216ENST00000598201 MYH8P13535 1937 aa19.49■□□□□ 0.71
SHKBP1-216ENST00000598201 SIPA1L1O43166 1804 aa19.49■□□□□ 0.71
SHKBP1-216ENST00000598201 M0R2N6 131 aa19.49■□□□□ 0.71
SHKBP1-216ENST00000598201 BIN1O00499 593 aa19.49■□□□□ 0.71
SHKBP1-216ENST00000598201 KRBA2Q6ZNG9 492 aa19.49■□□□□ 0.71
SHKBP1-216ENST00000598201 UBA5Q9GZZ9 404 aa19.49■□□□□ 0.71
SHKBP1-216ENST00000598201 TDRD3Q9H7E2 651 aaKnown RBP19.49■□□□□ 0.71
SHKBP1-216ENST00000598201 CCDC39Q9UFE4 941 aa19.49■□□□□ 0.71
SHKBP1-216ENST00000598201 FRMPD2Q68DX3 1309 aaPredicted RBP19.49■□□□□ 0.71
SHKBP1-216ENST00000598201 ZC3H4Q9UPT8 1303 aaKnown RBP19.49■□□□□ 0.71
SHKBP1-216ENST00000598201 TTLL1O95922 423 aa19.48■□□□□ 0.71
SHKBP1-216ENST00000598201 SHROOM1Q2M3G4 852 aaPredicted RBP19.48■□□□□ 0.71
SHKBP1-216ENST00000598201 DPCR1Q3MIW9 517 aa19.48■□□□□ 0.71
SHKBP1-216ENST00000598201 CFAP100Q494V2 611 aa19.48■□□□□ 0.71
SHKBP1-216ENST00000598201 CIAPIN1Q6FI81 312 aa19.48■□□□□ 0.71
SHKBP1-216ENST00000598201 METTL16Q86W50 562 aaKnown RBP19.48■□□□□ 0.71
SHKBP1-216ENST00000598201 HOMER1Q86YM7 354 aa19.48■□□□□ 0.71
SHKBP1-216ENST00000598201 PRMT6Q96LA8 375 aaPredicted RBP19.48■□□□□ 0.71
SHKBP1-216ENST00000598201 VAT1LQ9HCJ6 419 aa19.48■□□□□ 0.71
SHKBP1-216ENST00000598201 ZNF541Q9H0D2 1346 aa19.48■□□□□ 0.71
SHKBP1-216ENST00000598201 MPHOSPH10O00566 681 aaKnown RBP19.48■□□□□ 0.71
SHKBP1-216ENST00000598201 PNOCQ13519 176 aa19.48■□□□□ 0.71
SHKBP1-216ENST00000598201 TNIP1Q15025 636 aa19.48■□□□□ 0.71
SHKBP1-216ENST00000598201 DHX40Q8IX18 779 aaKnown RBP19.48■□□□□ 0.71
SHKBP1-216ENST00000598201 DHX36Q9H2U1 1008 aaKnown RBP19.48■□□□□ 0.71
SHKBP1-216ENST00000598201 FAM13BQ9NYF5 915 aa19.48■□□□□ 0.71
SHKBP1-216ENST00000598201 PSMD14O00487 310 aa19.47■□□□□ 0.71
SHKBP1-216ENST00000598201 FOXN1O15353 648 aa19.47■□□□□ 0.71
SHKBP1-216ENST00000598201 PTMAP06454 111 aaKnown RBP19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms