RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 GPBP1L1Q9HC44 474 aaPredicted RBP17.01■□□□□ 0.31
VRK3-212ENST00000596814 SNCAIPQ9Y6H5 919 aa17.01■□□□□ 0.31
VRK3-212ENST00000596814 AKAP17AQ02040 695 aaKnown RBP17.01■□□□□ 0.31
VRK3-212ENST00000596814 CHADLQ6NUI6 762 aa17.01■□□□□ 0.31
VRK3-212ENST00000596814 ANKRD13AQ8IZ07 590 aa17.01■□□□□ 0.31
VRK3-212ENST00000596814 WDR18Q9BV38 432 aa17.01■□□□□ 0.31
VRK3-212ENST00000596814 ISY1Q9ULR0 285 aaKnown RBP17.01■□□□□ 0.31
VRK3-212ENST00000596814 BAZ2BQ9UIF8 2168 aaKnown RBP17.01■□□□□ 0.31
VRK3-212ENST00000596814 DEXIO95424 95 aa17■□□□□ 0.31
VRK3-212ENST00000596814 SYT1P21579 422 aa17■□□□□ 0.31
VRK3-212ENST00000596814 NUCB2P80303 420 aa17■□□□□ 0.31
VRK3-212ENST00000596814 FMR1Q06787 632 aaKnown RBP eCLIP17■□□□□ 0.31
VRK3-212ENST00000596814 ZYXQ15942 572 aaKnown RBP17■□□□□ 0.31
VRK3-212ENST00000596814 LARP1BQ659C4 914 aaKnown RBP17■□□□□ 0.31
VRK3-212ENST00000596814 MOB2Q70IA6 237 aa17■□□□□ 0.31
VRK3-212ENST00000596814 KCTD1Q719H9 257 aa17■□□□□ 0.31
VRK3-212ENST00000596814 SPZ1Q9BXG8 430 aa17■□□□□ 0.31
VRK3-212ENST00000596814 KIAA1683Q9H0B3 1180 aa17■□□□□ 0.31
VRK3-212ENST00000596814 GPCPD1Q9NPB8 672 aa17■□□□□ 0.31
VRK3-212ENST00000596814 TRPM7Q96QT4 1865 aa17■□□□□ 0.31
VRK3-212ENST00000596814 SPICE1Q8N0Z3 855 aa16.99■□□□□ 0.31
VRK3-212ENST00000596814 ZNF280CQ8ND82 737 aa16.99■□□□□ 0.31
VRK3-212ENST00000596814 WASF1Q92558 559 aa16.99■□□□□ 0.31
VRK3-212ENST00000596814 RBM27Q9P2N5 1060 aaKnown RBP16.99■□□□□ 0.31
VRK3-212ENST00000596814 ZHX2Q9Y6X8 837 aa16.99■□□□□ 0.31
VRK3-212ENST00000596814 USP17L10C9JJH3 530 aa16.99■□□□□ 0.31
VRK3-212ENST00000596814 PRPF3O43395 683 aaKnown RBP16.99■□□□□ 0.31
VRK3-212ENST00000596814 STX6O43752 255 aa16.99■□□□□ 0.31
VRK3-212ENST00000596814 BMP3P12645 472 aa16.99■□□□□ 0.31
VRK3-212ENST00000596814 PDIA4P13667 645 aaKnown RBP16.99■□□□□ 0.31
VRK3-212ENST00000596814 SMARCA1P28370 1054 aa16.99■□□□□ 0.31
VRK3-212ENST00000596814 SPP2Q13103 211 aa16.99■□□□□ 0.31
VRK3-212ENST00000596814 MTMR2Q13614 643 aa16.99■□□□□ 0.31
VRK3-212ENST00000596814 PKP1Q13835 747 aa16.99■□□□□ 0.31
VRK3-212ENST00000596814 NUP88Q99567 741 aaPredicted RBP16.99■□□□□ 0.31
VRK3-212ENST00000596814 ALG1Q9BT22 464 aa16.99■□□□□ 0.31
VRK3-212ENST00000596814 CYTH3O43739 400 aa16.98■□□□□ 0.31
VRK3-212ENST00000596814 FOSBP53539 338 aa16.98■□□□□ 0.31
VRK3-212ENST00000596814 USP14P54578 494 aa16.98■□□□□ 0.31
VRK3-212ENST00000596814 SLC35G1Q2M3R5 365 aa16.98■□□□□ 0.31
VRK3-212ENST00000596814 KIAA1755Q5JYT7 1200 aa16.98■□□□□ 0.31
VRK3-212ENST00000596814 LPAR1Q92633 364 aa16.98■□□□□ 0.31
VRK3-212ENST00000596814 CPVLQ9H3G5 476 aa16.98■□□□□ 0.31
VRK3-212ENST00000596814 ELP3Q9H9T3 547 aa16.98■□□□□ 0.31
VRK3-212ENST00000596814 V9GY48 417 aaPredicted RBP16.98■□□□□ 0.31
VRK3-212ENST00000596814 PTPRFP10586 1907 aa16.98■□□□□ 0.31
VRK3-212ENST00000596814 WDR33Q9C0J8 1336 aaKnown RBP16.98■□□□□ 0.31
VRK3-212ENST00000596814 VPS37CA5D8V6 355 aaPredicted RBP16.97■□□□□ 0.31
VRK3-212ENST00000596814 TRIM75PA6NK02 468 aa16.97■□□□□ 0.31
VRK3-212ENST00000596814 UBE2Q2LH0YL09 131 aa16.97■□□□□ 0.31
VRK3-212ENST00000596814 CELF2O95319 508 aaKnown RBP16.97■□□□□ 0.31
VRK3-212ENST00000596814 BACE1P56817 501 aa16.97■□□□□ 0.31
VRK3-212ENST00000596814 FKBP1BP68106 108 aa16.97■□□□□ 0.31
VRK3-212ENST00000596814 TTBK2Q6IQ55 1244 aa16.97■□□□□ 0.31
VRK3-212ENST00000596814 CLMNQ96JQ2 1002 aa16.97■□□□□ 0.31
VRK3-212ENST00000596814 C8orf76Q96K31 380 aa16.97■□□□□ 0.31
VRK3-212ENST00000596814 UBA5Q9GZZ9 404 aa16.97■□□□□ 0.31
VRK3-212ENST00000596814 RIOX1Q9H6W3 641 aa16.97■□□□□ 0.31
VRK3-212ENST00000596814 GBA2Q9HCG7 927 aaPredicted RBP16.97■□□□□ 0.31
VRK3-212ENST00000596814 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.97■□□□□ 0.31
VRK3-212ENST00000596814 hCG_1642624A0A1W2PR95 340 aa16.96■□□□□ 0.31
VRK3-212ENST00000596814 H3BQV1 296 aa16.96■□□□□ 0.31
VRK3-212ENST00000596814 BRD1O95696 1058 aa16.96■□□□□ 0.31
VRK3-212ENST00000596814 ITGBL1O95965 494 aaPredicted RBP16.96■□□□□ 0.31
VRK3-212ENST00000596814 FAM83BQ5T0W9 1011 aa16.96■□□□□ 0.31
VRK3-212ENST00000596814 IFFO2Q5TF58 517 aa16.96■□□□□ 0.31
VRK3-212ENST00000596814 PIBF1Q8WXW3 757 aa16.96■□□□□ 0.31
VRK3-212ENST00000596814 AIFM3Q96NN9 605 aa16.96■□□□□ 0.31
VRK3-212ENST00000596814 AFG3L2Q9Y4W6 797 aa16.96■□□□□ 0.31
VRK3-212ENST00000596814 SPDYE5A6NIY4 337 aa16.96■□□□□ 0.3
VRK3-212ENST00000596814 UNCXA6NJT0 531 aa16.96■□□□□ 0.3
VRK3-212ENST00000596814 WDR46O15213 610 aaKnown RBP16.96■□□□□ 0.3
VRK3-212ENST00000596814 IKQ13123 557 aaPredicted RBP16.96■□□□□ 0.3
VRK3-212ENST00000596814 PKN1Q16512 942 aa16.96■□□□□ 0.3
VRK3-212ENST00000596814 LDLRAD1Q5T700 205 aa16.96■□□□□ 0.3
VRK3-212ENST00000596814 ERO1BQ86YB8 467 aa16.96■□□□□ 0.3
VRK3-212ENST00000596814 RRP36Q96EU6 259 aaKnown RBP16.96■□□□□ 0.3
VRK3-212ENST00000596814 MTMR6Q9Y217 621 aa16.96■□□□□ 0.3
VRK3-212ENST00000596814 C19orf81C9J6K1 198 aa16.95■□□□□ 0.3
VRK3-212ENST00000596814 TMEM232C9JQI7 657 aa16.95■□□□□ 0.3
VRK3-212ENST00000596814 KIF3CO14782 793 aa16.95■□□□□ 0.3
VRK3-212ENST00000596814 SCG2P13521 617 aa16.95■□□□□ 0.3
VRK3-212ENST00000596814 SLC16A2P36021 539 aa16.95■□□□□ 0.3
VRK3-212ENST00000596814 STAT2P52630 851 aa16.95■□□□□ 0.3
VRK3-212ENST00000596814 PPATQ06203 517 aa16.95■□□□□ 0.3
VRK3-212ENST00000596814 TRIM29Q14134 588 aa16.95■□□□□ 0.3
VRK3-212ENST00000596814 PFKFB3Q16875 520 aaPredicted RBP16.95■□□□□ 0.3
VRK3-212ENST00000596814 HOMER1Q86YM7 354 aa16.95■□□□□ 0.3
VRK3-212ENST00000596814 ADGRF4Q8IZF3 695 aa16.95■□□□□ 0.3
VRK3-212ENST00000596814 C2orf69Q8N8R5 385 aa16.95■□□□□ 0.3
VRK3-212ENST00000596814 CNKSR2Q8WXI2 1034 aa16.95■□□□□ 0.3
VRK3-212ENST00000596814 VAT1LQ9HCJ6 419 aa16.95■□□□□ 0.3
VRK3-212ENST00000596814 SEC63Q9UGP8 760 aaKnown RBP16.95■□□□□ 0.3
VRK3-212ENST00000596814 ZDHHC9Q9Y397 364 aa16.95■□□□□ 0.3
VRK3-212ENST00000596814 ZSCAN22P10073 491 aaPredicted RBP16.94■□□□□ 0.3
VRK3-212ENST00000596814 VCAM1P19320 739 aa16.94■□□□□ 0.3
VRK3-212ENST00000596814 GUCY1B3Q02153 619 aa16.94■□□□□ 0.3
VRK3-212ENST00000596814 DGKZQ13574 1117 aa16.94■□□□□ 0.3
VRK3-212ENST00000596814 SYDE2Q5VT97 1194 aa16.94■□□□□ 0.3
VRK3-212ENST00000596814 FOXD4L5Q5VV16 416 aaPredicted RBP16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms