RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 SPATC1LQ9H0A9 340 aa21.04■□□□□ 0.96
SHKBP1-204ENST00000594862 MROH8Q9H579 483 aa21.04■□□□□ 0.96
SHKBP1-204ENST00000594862 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.04■□□□□ 0.96
SHKBP1-204ENST00000594862 TSPY2A6NKD2 308 aa21.03■□□□□ 0.96
SHKBP1-204ENST00000594862 F5H6K3 240 aa21.03■□□□□ 0.96
SHKBP1-204ENST00000594862 ORC4O43929 436 aa21.03■□□□□ 0.96
SHKBP1-204ENST00000594862 PEX10O60683 326 aa21.03■□□□□ 0.96
SHKBP1-204ENST00000594862 HSPD1P10809 573 aaKnown RBP21.03■□□□□ 0.96
SHKBP1-204ENST00000594862 CYP2B6P20813 491 aa21.03■□□□□ 0.96
SHKBP1-204ENST00000594862 PTPREP23469 700 aa21.03■□□□□ 0.96
SHKBP1-204ENST00000594862 TFAP4Q01664 338 aa21.03■□□□□ 0.96
SHKBP1-204ENST00000594862 KLRC3Q07444 240 aa21.03■□□□□ 0.96
SHKBP1-204ENST00000594862 MAP2K5Q13163 448 aa21.03■□□□□ 0.96
SHKBP1-204ENST00000594862 GMCL1P1Q8NEA9 526 aa21.03■□□□□ 0.96
SHKBP1-204ENST00000594862 USP6NLQ92738 828 aa21.03■□□□□ 0.96
SHKBP1-204ENST00000594862 UNC93B1Q9H1C4 597 aa21.03■□□□□ 0.96
SHKBP1-204ENST00000594862 CLIP2Q9UDT6 1046 aa21.03■□□□□ 0.96
SHKBP1-204ENST00000594862 PPP1R9AQ9ULJ8 1098 aa21.03■□□□□ 0.96
SHKBP1-204ENST00000594862 SLC25A27O95847 323 aa21.02■□□□□ 0.96
SHKBP1-204ENST00000594862 FAM83BQ5T0W9 1011 aa21.02■□□□□ 0.96
SHKBP1-204ENST00000594862 U2AF1L4Q8WU68 220 aaKnown RBP21.02■□□□□ 0.96
SHKBP1-204ENST00000594862 ATG4CQ96DT6 458 aa21.02■□□□□ 0.96
SHKBP1-204ENST00000594862 MOV10L1Q9BXT6 1211 aaKnown RBP21.02■□□□□ 0.96
SHKBP1-204ENST00000594862 PAK6Q9NQU5 681 aaPredicted RBP21.02■□□□□ 0.96
SHKBP1-204ENST00000594862 ADAMTS5Q9UNA0 930 aa21.02■□□□□ 0.96
SHKBP1-204ENST00000594862 RPTORQ8N122 1335 aa21.02■□□□□ 0.95
SHKBP1-204ENST00000594862 NDUFB10O96000 172 aa21.01■□□□□ 0.95
SHKBP1-204ENST00000594862 FGAP02671 866 aa21.01■□□□□ 0.95
SHKBP1-204ENST00000594862 HOXC6P09630 235 aa21.01■□□□□ 0.95
SHKBP1-204ENST00000594862 FGRP09769 529 aa21.01■□□□□ 0.95
SHKBP1-204ENST00000594862 GRB14Q14449 540 aa21.01■□□□□ 0.95
SHKBP1-204ENST00000594862 TTC22Q5TAA0 569 aa21.01■□□□□ 0.95
SHKBP1-204ENST00000594862 ZNF589Q86UQ0 364 aaPredicted RBP21.01■□□□□ 0.95
SHKBP1-204ENST00000594862 ABRAQ8N0Z2 381 aa21.01■□□□□ 0.95
SHKBP1-204ENST00000594862 TRIB2Q92519 343 aa21.01■□□□□ 0.95
SHKBP1-204ENST00000594862 SLF1Q9BQI6 1058 aa21.01■□□□□ 0.95
SHKBP1-204ENST00000594862 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.01■□□□□ 0.95
SHKBP1-204ENST00000594862 RNF41Q9H4P4 317 aaPredicted RBP21.01■□□□□ 0.95
SHKBP1-204ENST00000594862 HMX1Q9NP08 348 aaPredicted RBP21.01■□□□□ 0.95
SHKBP1-204ENST00000594862 SLC5A4Q9NY91 659 aa21.01■□□□□ 0.95
SHKBP1-204ENST00000594862 SGPL1O95470 568 aa21■□□□□ 0.95
SHKBP1-204ENST00000594862 CTDSPL2Q05D32 466 aa21■□□□□ 0.95
SHKBP1-204ENST00000594862 PLS1Q14651 629 aa21■□□□□ 0.95
SHKBP1-204ENST00000594862 CWC27Q6UX04 472 aaKnown RBP21■□□□□ 0.95
SHKBP1-204ENST00000594862 RAD50Q92878 1312 aa21■□□□□ 0.95
SHKBP1-204ENST00000594862 LAMA4Q16363 1823 aa20.99■□□□□ 0.95
SHKBP1-204ENST00000594862 VWA5AO00534 786 aa20.99■□□□□ 0.95
SHKBP1-204ENST00000594862 RANBP6O60518 1105 aaKnown RBP20.99■□□□□ 0.95
SHKBP1-204ENST00000594862 FAM47AQ5JRC9 791 aa20.99■□□□□ 0.95
SHKBP1-204ENST00000594862 MAP3K21Q5TCX8 1036 aa20.99■□□□□ 0.95
SHKBP1-204ENST00000594862 PRPF38AQ8NAV1 312 aaKnown RBP20.99■□□□□ 0.95
SHKBP1-204ENST00000594862 SHISA4Q96DD7 197 aa20.99■□□□□ 0.95
SHKBP1-204ENST00000594862 FEM1BQ9UK73 627 aa20.99■□□□□ 0.95
SHKBP1-204ENST00000594862 STX8Q9UNK0 236 aa20.99■□□□□ 0.95
SHKBP1-204ENST00000594862 FDX1P10109 184 aa20.98■□□□□ 0.95
SHKBP1-204ENST00000594862 ERCC3P19447 782 aa20.98■□□□□ 0.95
SHKBP1-204ENST00000594862 PDE4AP27815 886 aa20.98■□□□□ 0.95
SHKBP1-204ENST00000594862 MFSD14CQ5VZR4 134 aa20.98■□□□□ 0.95
SHKBP1-204ENST00000594862 SAMD1Q6SPF0 538 aaPredicted RBP20.98■□□□□ 0.95
SHKBP1-204ENST00000594862 NCAPG2Q86XI2 1143 aa20.98■□□□□ 0.95
SHKBP1-204ENST00000594862 RIOX2Q8IUF8 465 aa20.98■□□□□ 0.95
SHKBP1-204ENST00000594862 LRRC47Q8N1G4 583 aaKnown RBP20.98■□□□□ 0.95
SHKBP1-204ENST00000594862 GMCL1Q96IK5 515 aa20.98■□□□□ 0.95
SHKBP1-204ENST00000594862 DEFB118Q96PH6 123 aa20.98■□□□□ 0.95
SHKBP1-204ENST00000594862 TOMM22Q9NS69 142 aa20.98■□□□□ 0.95
SHKBP1-204ENST00000594862 FBXO28Q9NVF7 368 aa20.98■□□□□ 0.95
SHKBP1-204ENST00000594862 CTDP1Q9Y5B0 961 aaPredicted RBP20.98■□□□□ 0.95
SHKBP1-204ENST00000594862 CEP290O15078 2479 aa20.98■□□□□ 0.95
SHKBP1-204ENST00000594862 COL11A1P12107 1806 aaPredicted RBP20.97■□□□□ 0.95
SHKBP1-204ENST00000594862 PRKAR2AP13861 404 aaKnown RBP20.97■□□□□ 0.95
SHKBP1-204ENST00000594862 TMEM132BQ14DG7 1078 aa20.97■□□□□ 0.95
SHKBP1-204ENST00000594862 SLFN13Q68D06 897 aa20.97■□□□□ 0.95
SHKBP1-204ENST00000594862 MFSD6Q6ZSS7 791 aa20.97■□□□□ 0.95
SHKBP1-204ENST00000594862 DPP9Q86TI2 863 aa20.97■□□□□ 0.95
SHKBP1-204ENST00000594862 ANKLE1Q8NAG6 615 aa20.97■□□□□ 0.95
SHKBP1-204ENST00000594862 RUFY2Q8WXA3 655 aa20.97■□□□□ 0.95
SHKBP1-204ENST00000594862 DSCC1Q9BVC3 393 aa20.97■□□□□ 0.95
SHKBP1-204ENST00000594862 TEX13BQ9BXU2 312 aa20.97■□□□□ 0.95
SHKBP1-204ENST00000594862 CRISPLD2Q9H0B8 497 aa20.97■□□□□ 0.95
SHKBP1-204ENST00000594862 CTNNA3Q9UI47 895 aa20.97■□□□□ 0.95
SHKBP1-204ENST00000594862 ZNF213O14771 459 aa20.96■□□□□ 0.95
SHKBP1-204ENST00000594862 FARP2O94887 1054 aaPredicted RBP20.96■□□□□ 0.95
SHKBP1-204ENST00000594862 FCER1AP12319 257 aa20.96■□□□□ 0.95
SHKBP1-204ENST00000594862 BMP3P12645 472 aa20.96■□□□□ 0.95
SHKBP1-204ENST00000594862 STAT3P40763 770 aa20.96■□□□□ 0.95
SHKBP1-204ENST00000594862 AKNAD1Q5T1N1 836 aa20.96■□□□□ 0.95
SHKBP1-204ENST00000594862 STAG1Q8WVM7 1258 aa20.96■□□□□ 0.95
SHKBP1-204ENST00000594862 NUP88Q99567 741 aaPredicted RBP20.96■□□□□ 0.95
SHKBP1-204ENST00000594862 HTATIP2Q9BUP3 242 aa20.96■□□□□ 0.95
SHKBP1-204ENST00000594862 TCP11L1Q9NUJ3 509 aa20.96■□□□□ 0.95
SHKBP1-204ENST00000594862 ATP2A1O14983 1001 aa20.95■□□□□ 0.94
SHKBP1-204ENST00000594862 ZBED4O75132 1171 aa20.95■□□□□ 0.94
SHKBP1-204ENST00000594862 TFRCP02786 760 aaKnown RBP20.95■□□□□ 0.94
SHKBP1-204ENST00000594862 ADORA2AP29274 412 aa20.95■□□□□ 0.94
SHKBP1-204ENST00000594862 NOVP48745 357 aa20.95■□□□□ 0.94
SHKBP1-204ENST00000594862 OAZ1P54368 228 aa20.95■□□□□ 0.94
SHKBP1-204ENST00000594862 OLFML2BQ68BL8 750 aa20.95■□□□□ 0.94
SHKBP1-204ENST00000594862 FAM160B2Q86V87 743 aa20.95■□□□□ 0.94
SHKBP1-204ENST00000594862 ZNF214Q9UL59 606 aaPredicted RBP20.95■□□□□ 0.94
SHKBP1-204ENST00000594862 GSPT1P15170 499 aaKnown RBP20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 103.4 ms