RNA–Protein interactions for RNA: ENST00000594399.1

USE1-204, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 2

Gene USE1, Length 613 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-204ENST00000594399 WNK4Q96J92 1243 aa12.65□□□□□ -0.38
USE1-204ENST00000594399 TMX3Q96JJ7 454 aa12.65□□□□□ -0.38
USE1-204ENST00000594399 C12orf42Q96LP6 360 aa12.65□□□□□ -0.38
USE1-204ENST00000594399 HPS5Q9UPZ3 1129 aa12.65□□□□□ -0.38
USE1-204ENST00000594399 CCDC196A0A1B0GTZ2 297 aa12.64□□□□□ -0.39
USE1-204ENST00000594399 CXCL11O14625 94 aa12.64□□□□□ -0.39
USE1-204ENST00000594399 IRF6O14896 467 aa12.64□□□□□ -0.39
USE1-204ENST00000594399 PARP1P09874 1014 aaKnown RBP12.64□□□□□ -0.39
USE1-204ENST00000594399 ZBTB48P10074 688 aaPredicted RBP12.64□□□□□ -0.39
USE1-204ENST00000594399 GJA5P36382 358 aa12.64□□□□□ -0.39
USE1-204ENST00000594399 SLC1A4P43007 532 aa12.64□□□□□ -0.39
USE1-204ENST00000594399 CTCFP49711 727 aaPredicted RBP12.64□□□□□ -0.39
USE1-204ENST00000594399 HMGCS2P54868 508 aa12.64□□□□□ -0.39
USE1-204ENST00000594399 PPP2R5BQ15173 497 aa12.64□□□□□ -0.39
USE1-204ENST00000594399 ASPRV1Q53RT3 343 aa12.64□□□□□ -0.39
USE1-204ENST00000594399 GPATCH4Q5T3I0 446 aaKnown RBP12.64□□□□□ -0.39
USE1-204ENST00000594399 COL13A1Q5TAT6 717 aaPredicted RBP12.64□□□□□ -0.39
USE1-204ENST00000594399 RASAL3Q86YV0 1011 aa12.64□□□□□ -0.39
USE1-204ENST00000594399 SPICE1Q8N0Z3 855 aa12.64□□□□□ -0.39
USE1-204ENST00000594399 FANCBQ8NB91 859 aa12.64□□□□□ -0.39
USE1-204ENST00000594399 RBM28Q9NW13 759 aaKnown RBP12.64□□□□□ -0.39
USE1-204ENST00000594399 TMOD4Q9NZQ9 345 aa12.64□□□□□ -0.39
USE1-204ENST00000594399 ISY1Q9ULR0 285 aaKnown RBP12.64□□□□□ -0.39
USE1-204ENST00000594399 KCNH4Q9UQ05 1017 aa12.64□□□□□ -0.39
USE1-204ENST00000594399 A0A0G2JLL6 359 aaPredicted RBP12.63□□□□□ -0.39
USE1-204ENST00000594399 WDR46O15213 610 aaKnown RBP12.63□□□□□ -0.39
USE1-204ENST00000594399 FOXN1O15353 648 aa12.63□□□□□ -0.39
USE1-204ENST00000594399 VCAM1P19320 739 aa12.63□□□□□ -0.39
USE1-204ENST00000594399 ZNF157P51786 506 aaPredicted RBP12.63□□□□□ -0.39
USE1-204ENST00000594399 CCT2P78371 535 aaKnown RBP12.63□□□□□ -0.39
USE1-204ENST00000594399 SCRN1Q12765 414 aa12.63□□□□□ -0.39
USE1-204ENST00000594399 NOGQ13253 232 aa12.63□□□□□ -0.39
USE1-204ENST00000594399 SNAPC2Q13487 334 aa12.63□□□□□ -0.39
USE1-204ENST00000594399 DGKZQ13574 1117 aa12.63□□□□□ -0.39
USE1-204ENST00000594399 SH3D19Q5HYK7 790 aa12.63□□□□□ -0.39
USE1-204ENST00000594399 SPRYD7Q5W111 196 aa12.63□□□□□ -0.39
USE1-204ENST00000594399 RGMBQ6NW40 437 aa12.63□□□□□ -0.39
USE1-204ENST00000594399 PRRT2Q7Z6L0 340 aaPredicted RBP12.63□□□□□ -0.39
USE1-204ENST00000594399 CCDC83Q8IWF9 413 aa12.63□□□□□ -0.39
USE1-204ENST00000594399 NECAB1Q8N987 351 aa12.63□□□□□ -0.39
USE1-204ENST00000594399 CCDC102AQ96A19 550 aa12.63□□□□□ -0.39
USE1-204ENST00000594399 CHMP4CQ96CF2 233 aa12.63□□□□□ -0.39
USE1-204ENST00000594399 NCOA5Q9HCD5 579 aaKnown RBP12.63□□□□□ -0.39
USE1-204ENST00000594399 MAD2L2Q9UI95 211 aa12.63□□□□□ -0.39
USE1-204ENST00000594399 FRMPD2Q68DX3 1309 aaPredicted RBP12.62□□□□□ -0.39
USE1-204ENST00000594399 PALM3A6NDB9 673 aaPredicted RBP12.62□□□□□ -0.39
USE1-204ENST00000594399 CPLX1O14810 134 aa12.62□□□□□ -0.39
USE1-204ENST00000594399 DHX16O60231 1041 aaKnown RBP12.62□□□□□ -0.39
USE1-204ENST00000594399 CDKL5O76039 1030 aa12.62□□□□□ -0.39
USE1-204ENST00000594399 SLC10A3P09131 477 aa12.62□□□□□ -0.39
USE1-204ENST00000594399 GOLGA8HP0CJ92 632 aa12.62□□□□□ -0.39
USE1-204ENST00000594399 BMP3P12645 472 aa12.62□□□□□ -0.39
USE1-204ENST00000594399 CDC27P30260 824 aa12.62□□□□□ -0.39
USE1-204ENST00000594399 GNAQP50148 359 aa12.62□□□□□ -0.39
USE1-204ENST00000594399 ZNF543Q08ER8 600 aa12.62□□□□□ -0.39
USE1-204ENST00000594399 ST3GAL1Q11201 340 aa12.62□□□□□ -0.39
USE1-204ENST00000594399 KIAA1755Q5JYT7 1200 aa12.62□□□□□ -0.39
USE1-204ENST00000594399 FAM83BQ5T0W9 1011 aa12.62□□□□□ -0.39
USE1-204ENST00000594399 CPLX2Q6PUV4 134 aaKnown RBP12.62□□□□□ -0.39
USE1-204ENST00000594399 GADL1Q6ZQY3 521 aa12.62□□□□□ -0.39
USE1-204ENST00000594399 TMTC3Q6ZXV5 915 aa12.62□□□□□ -0.39
USE1-204ENST00000594399 KCTD1Q719H9 257 aa12.62□□□□□ -0.39
USE1-204ENST00000594399 PROCA1Q8NCQ7 364 aaPredicted RBP12.62□□□□□ -0.39
USE1-204ENST00000594399 NUP88Q99567 741 aaPredicted RBP12.62□□□□□ -0.39
USE1-204ENST00000594399 EMILIN3Q9NT22 766 aa12.62□□□□□ -0.39
USE1-204ENST00000594399 KLRF2D3W0D1 207 aa12.61□□□□□ -0.39
USE1-204ENST00000594399 CA12O43570 354 aa12.61□□□□□ -0.39
USE1-204ENST00000594399 AOC2O75106 756 aa12.61□□□□□ -0.39
USE1-204ENST00000594399 PLEKHA8P1O95397 391 aa12.61□□□□□ -0.39
USE1-204ENST00000594399 CETPP11597 493 aa12.61□□□□□ -0.39
USE1-204ENST00000594399 STAT2P52630 851 aa12.61□□□□□ -0.39
USE1-204ENST00000594399 GTF2A2P52657 109 aa12.61□□□□□ -0.39
USE1-204ENST00000594399 MKRN3Q13064 507 aaKnown RBP12.61□□□□□ -0.39
USE1-204ENST00000594399 CUL4AQ13619 759 aa12.61□□□□□ -0.39
USE1-204ENST00000594399 FASTKD5Q7L8L6 764 aaKnown RBP12.61□□□□□ -0.39
USE1-204ENST00000594399 STAG2Q8N3U4 1231 aa12.61□□□□□ -0.39
USE1-204ENST00000594399 LZTS2Q9BRK4 669 aa12.61□□□□□ -0.39
USE1-204ENST00000594399 TANGO6Q9C0B7 1094 aa12.61□□□□□ -0.39
USE1-204ENST00000594399 RPAP3Q9H6T3 665 aaPredicted RBP12.61□□□□□ -0.39
USE1-204ENST00000594399 GPCPD1Q9NPB8 672 aa12.61□□□□□ -0.39
USE1-204ENST00000594399 PRDM10Q9NQV6 1147 aa12.61□□□□□ -0.39
USE1-204ENST00000594399 FAM217BQ9NTX9 383 aaPredicted RBP12.61□□□□□ -0.39
USE1-204ENST00000594399 THSD7BQ9C0I4 1608 aa12.6□□□□□ -0.39
USE1-204ENST00000594399 TMEM232C9JQI7 657 aa12.6□□□□□ -0.39
USE1-204ENST00000594399 HSP90AA1P07900 732 aaKnown RBP12.6□□□□□ -0.39
USE1-204ENST00000594399 IFNAR1P17181 557 aa12.6□□□□□ -0.39
USE1-204ENST00000594399 ADD1P35611 737 aaKnown RBP12.6□□□□□ -0.39
USE1-204ENST00000594399 IKQ13123 557 aaPredicted RBP12.6□□□□□ -0.39
USE1-204ENST00000594399 TNS4Q8IZW8 715 aa12.6□□□□□ -0.39
USE1-204ENST00000594399 LLPHQ9BRT6 129 aaKnown RBP12.6□□□□□ -0.39
USE1-204ENST00000594399 SPZ1Q9BXG8 430 aa12.6□□□□□ -0.39
USE1-204ENST00000594399 AGTPBP1Q9UPW5 1226 aa12.6□□□□□ -0.39
USE1-204ENST00000594399 PARP14Q460N5 1801 aa12.6□□□□□ -0.39
USE1-204ENST00000594399 CNTNAP5Q8WYK1 1306 aa12.6□□□□□ -0.39
USE1-204ENST00000594399 CCL15-CCL14A0A0B4J2E2 113 aa12.59□□□□□ -0.39
USE1-204ENST00000594399 PTPDC1A2A3K4 754 aa12.59□□□□□ -0.39
USE1-204ENST00000594399 FAM155AB1AL88 458 aaPredicted RBP12.59□□□□□ -0.39
USE1-204ENST00000594399 PLA2G6O60733 806 aa12.59□□□□□ -0.39
USE1-204ENST00000594399 PABPC4Q13310 644 aaKnown RBP eCLIP12.59□□□□□ -0.39
USE1-204ENST00000594399 MOGSQ13724 837 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms