RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 MTMR4Q9NYA4 1195 aa18.14■□□□□ 0.49
TRIM28-203ENST00000593582 SDSP20132 328 aa18.13■□□□□ 0.49
TRIM28-203ENST00000593582 MFAP1P55081 439 aaKnown RBP18.13■□□□□ 0.49
TRIM28-203ENST00000593582 CTDSPL2Q05D32 466 aa18.13■□□□□ 0.49
TRIM28-203ENST00000593582 TRIM32Q13049 653 aa18.13■□□□□ 0.49
TRIM28-203ENST00000593582 GRB14Q14449 540 aa18.13■□□□□ 0.49
TRIM28-203ENST00000593582 FAM47AQ5JRC9 791 aa18.13■□□□□ 0.49
TRIM28-203ENST00000593582 SHCBP1Q8NEM2 672 aa18.13■□□□□ 0.49
TRIM28-203ENST00000593582 MKL1Q969V6 931 aa18.13■□□□□ 0.49
TRIM28-203ENST00000593582 MROH8Q9H579 483 aa18.13■□□□□ 0.49
TRIM28-203ENST00000593582 FBXO28Q9NVF7 368 aa18.13■□□□□ 0.49
TRIM28-203ENST00000593582 ANAPC4Q9UJX5 808 aa18.13■□□□□ 0.49
TRIM28-203ENST00000593582 SYNPO2Q9UMS6 1093 aa18.13■□□□□ 0.49
TRIM28-203ENST00000593582 PLIN4Q96Q06 1357 aa18.13■□□□□ 0.49
TRIM28-203ENST00000593582 GREB1LQ9C091 1923 aaPredicted RBP18.13■□□□□ 0.49
TRIM28-203ENST00000593582 PLXNB2O15031 1838 aa18.12■□□□□ 0.49
TRIM28-203ENST00000593582 STRNO43815 780 aa18.12■□□□□ 0.49
TRIM28-203ENST00000593582 NDUFB10O96000 172 aa18.12■□□□□ 0.49
TRIM28-203ENST00000593582 FGAP02671 866 aa18.12■□□□□ 0.49
TRIM28-203ENST00000593582 HSPD1P10809 573 aaKnown RBP18.12■□□□□ 0.49
TRIM28-203ENST00000593582 PRKAR2AP13861 404 aaKnown RBP18.12■□□□□ 0.49
TRIM28-203ENST00000593582 ERCC3P19447 782 aa18.12■□□□□ 0.49
TRIM28-203ENST00000593582 PPP4R3BQ5MIZ7 849 aa18.12■□□□□ 0.49
TRIM28-203ENST00000593582 MAP3K21Q5TCX8 1036 aa18.12■□□□□ 0.49
TRIM28-203ENST00000593582 ZNF589Q86UQ0 364 aaPredicted RBP18.12■□□□□ 0.49
TRIM28-203ENST00000593582 PPP1R9AQ9ULJ8 1098 aa18.12■□□□□ 0.49
TRIM28-203ENST00000593582 ADAMTS5Q9UNA0 930 aa18.12■□□□□ 0.49
TRIM28-203ENST00000593582 CCDC171Q6TFL3 1326 aa18.12■□□□□ 0.49
TRIM28-203ENST00000593582 TSPY2A6NKD2 308 aa18.11■□□□□ 0.49
TRIM28-203ENST00000593582 HIP1O00291 1037 aa18.11■□□□□ 0.49
TRIM28-203ENST00000593582 VWA5AO00534 786 aa18.11■□□□□ 0.49
TRIM28-203ENST00000593582 FARP2O94887 1054 aaPredicted RBP18.11■□□□□ 0.49
TRIM28-203ENST00000593582 HOXC6P09630 235 aa18.11■□□□□ 0.49
TRIM28-203ENST00000593582 TMEM132BQ14DG7 1078 aa18.11■□□□□ 0.49
TRIM28-203ENST00000593582 CCL14Q16627 93 aa18.11■□□□□ 0.49
TRIM28-203ENST00000593582 DPP9Q86TI2 863 aa18.11■□□□□ 0.49
TRIM28-203ENST00000593582 NCAPG2Q86XI2 1143 aa18.11■□□□□ 0.49
TRIM28-203ENST00000593582 NUP88Q99567 741 aaPredicted RBP18.11■□□□□ 0.49
TRIM28-203ENST00000593582 SLF1Q9BQI6 1058 aa18.11■□□□□ 0.49
TRIM28-203ENST00000593582 DIAPH3Q9NSV4 1193 aa18.11■□□□□ 0.49
TRIM28-203ENST00000593582 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.11■□□□□ 0.498e-9■□□□□ 9.2
TRIM28-203ENST00000593582 ZMYM6O95789 1325 aa18.1■□□□□ 0.49
TRIM28-203ENST00000593582 SLC25A27O95847 323 aa18.1■□□□□ 0.49
TRIM28-203ENST00000593582 MFSD14CQ5VZR4 134 aa18.1■□□□□ 0.49
TRIM28-203ENST00000593582 UBE2Q1Q7Z7E8 422 aa18.1■□□□□ 0.49
TRIM28-203ENST00000593582 LRRC47Q8N1G4 583 aaKnown RBP18.1■□□□□ 0.49
TRIM28-203ENST00000593582 PRPF38AQ8NAV1 312 aaKnown RBP18.1■□□□□ 0.49
TRIM28-203ENST00000593582 GMCL1P1Q8NEA9 526 aa18.1■□□□□ 0.49
TRIM28-203ENST00000593582 CRISPLD2Q9H0B8 497 aa18.1■□□□□ 0.49
TRIM28-203ENST00000593582 INCENPQ9NQS7 918 aa18.1■□□□□ 0.49
TRIM28-203ENST00000593582 RLFQ13129 1914 aa18.1■□□□□ 0.49
TRIM28-203ENST00000593582 A0A0G2JMZ2 1700 aa18.09■□□□□ 0.49
TRIM28-203ENST00000593582 RANBP6O60518 1105 aaKnown RBP18.09■□□□□ 0.49
TRIM28-203ENST00000593582 ADORA2AP29274 412 aa18.09■□□□□ 0.49
TRIM28-203ENST00000593582 CACNB2Q08289 660 aaPredicted RBP18.09■□□□□ 0.49
TRIM28-203ENST00000593582 CWC27Q6UX04 472 aaKnown RBP18.09■□□□□ 0.49
TRIM28-203ENST00000593582 ABRAQ8N0Z2 381 aa18.09■□□□□ 0.49
TRIM28-203ENST00000593582 HTATIP2Q9BUP3 242 aa18.09■□□□□ 0.49
TRIM28-203ENST00000593582 TOMM22Q9NS69 142 aa18.09■□□□□ 0.49
TRIM28-203ENST00000593582 SLC5A4Q9NY91 659 aa18.09■□□□□ 0.49
TRIM28-203ENST00000593582 STX8Q9UNK0 236 aa18.09■□□□□ 0.49
TRIM28-203ENST00000593582 ORC4O43929 436 aa18.08■□□□□ 0.48
TRIM28-203ENST00000593582 FGRP09769 529 aa18.08■□□□□ 0.48
TRIM28-203ENST00000593582 FCER1AP12319 257 aa18.08■□□□□ 0.48
TRIM28-203ENST00000593582 STAT3P40763 770 aa18.08■□□□□ 0.48
TRIM28-203ENST00000593582 SLFN13Q68D06 897 aa18.08■□□□□ 0.48
TRIM28-203ENST00000593582 RIOX2Q8IUF8 465 aa18.08■□□□□ 0.48
TRIM28-203ENST00000593582 FEM1BQ9UK73 627 aa18.08■□□□□ 0.48
TRIM28-203ENST00000593582 CTDP1Q9Y5B0 961 aaPredicted RBP18.08■□□□□ 0.48
TRIM28-203ENST00000593582 PDE4AP27815 886 aa18.07■□□□□ 0.48
TRIM28-203ENST00000593582 COPB2P35606 906 aa18.07■□□□□ 0.48
TRIM28-203ENST00000593582 RRP12Q5JTH9 1297 aaKnown RBP18.07■□□□□ 0.48
TRIM28-203ENST00000593582 ANKLE1Q8NAG6 615 aa18.07■□□□□ 0.48
TRIM28-203ENST00000593582 REPS2Q8NFH8 660 aa18.07■□□□□ 0.48
TRIM28-203ENST00000593582 NPLOC4Q8TAT6 608 aa18.07■□□□□ 0.48
TRIM28-203ENST00000593582 DPF3Q92784 378 aa18.07■□□□□ 0.48
TRIM28-203ENST00000593582 IL17RBQ9NRM6 502 aa18.07■□□□□ 0.48
TRIM28-203ENST00000593582 FLRT1Q9NZU1 646 aa18.07■□□□□ 0.48
TRIM28-203ENST00000593582 ZNF214Q9UL59 606 aaPredicted RBP18.07■□□□□ 0.48
TRIM28-203ENST00000593582 ISY1Q9ULR0 285 aaKnown RBP18.07■□□□□ 0.48
TRIM28-203ENST00000593582 ZBED4O75132 1171 aa18.06■□□□□ 0.48
TRIM28-203ENST00000593582 PCP11498 1178 aaKnown RBP18.06■□□□□ 0.48
TRIM28-203ENST00000593582 BMP3P12645 472 aa18.06■□□□□ 0.48
TRIM28-203ENST00000593582 SLC1A4P43007 532 aa18.06■□□□□ 0.48
TRIM28-203ENST00000593582 HAND2P61296 217 aa18.06■□□□□ 0.48
TRIM28-203ENST00000593582 KIFC2Q96AC6 838 aa18.06■□□□□ 0.48
TRIM28-203ENST00000593582 TEX13BQ9BXU2 312 aa18.06■□□□□ 0.48
TRIM28-203ENST00000593582 TACC3Q9Y6A5 838 aa18.06■□□□□ 0.48
TRIM28-203ENST00000593582 NMT2O60551 498 aa18.05■□□□□ 0.48
TRIM28-203ENST00000593582 CCND3P30281 292 aaPredicted RBP18.05■□□□□ 0.48
TRIM28-203ENST00000593582 KCTD2Q14681 263 aa18.05■□□□□ 0.48
TRIM28-203ENST00000593582 TTC22Q5TAA0 569 aa18.05■□□□□ 0.48
TRIM28-203ENST00000593582 OLFML2BQ68BL8 750 aa18.05■□□□□ 0.48
TRIM28-203ENST00000593582 MFSD6Q6ZSS7 791 aa18.05■□□□□ 0.48
TRIM28-203ENST00000593582 NECAB2Q7Z6G3 386 aa18.05■□□□□ 0.48
TRIM28-203ENST00000593582 GMCL1Q96IK5 515 aa18.05■□□□□ 0.48
TRIM28-203ENST00000593582 PAWRQ96IZ0 340 aaKnown RBP18.05■□□□□ 0.48
TRIM28-203ENST00000593582 MMP19Q99542 508 aa18.05■□□□□ 0.48
TRIM28-203ENST00000593582 RNF41Q9H4P4 317 aaPredicted RBP18.05■□□□□ 0.48
TRIM28-203ENST00000593582 OGDHLQ9ULD0 1010 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms