RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 SPRED2Q7Z698 418 aa7.62□□□□□ -1.19
SMAD4-216ENST00000593223 SMARCC1Q92922 1105 aaPredicted RBP7.62□□□□□ -1.19
SMAD4-216ENST00000593223 GPR62Q9BZJ7 368 aa7.62□□□□□ -1.19
SMAD4-216ENST00000593223 DUSP15Q9H1R2 295 aaPredicted RBP7.62□□□□□ -1.19
SMAD4-216ENST00000593223 ZNF214Q9UL59 606 aaPredicted RBP7.62□□□□□ -1.19
SMAD4-216ENST00000593223 PCDHB12Q9Y5F1 795 aa7.62□□□□□ -1.19
SMAD4-216ENST00000593223 SNW1Q13573 536 aaKnown RBP7.61□□□□□ -1.19
SMAD4-216ENST00000593223 AUHQ13825 339 aaKnown RBP7.61□□□□□ -1.19
SMAD4-216ENST00000593223 PLCL1Q15111 1095 aa7.61□□□□□ -1.19
SMAD4-216ENST00000593223 PPFIBP1Q86W92 1011 aa7.61□□□□□ -1.19
SMAD4-216ENST00000593223 AGBL5Q8NDL9 886 aa7.61□□□□□ -1.19
SMAD4-216ENST00000593223 PRDM14Q9GZV8 571 aa7.61□□□□□ -1.19
SMAD4-216ENST00000593223 PAK6Q9NQU5 681 aaPredicted RBP7.61□□□□□ -1.19
SMAD4-216ENST00000593223 CUX2O14529 1486 aa7.61□□□□□ -1.19
SMAD4-216ENST00000593223 SHISA3A0PJX4 238 aa7.6□□□□□ -1.19
SMAD4-216ENST00000593223 WASH4PA8MWX3 477 aa7.6□□□□□ -1.19
SMAD4-216ENST00000593223 GTF2F1P35269 517 aaKnown RBP eCLIP7.6□□□□□ -1.19
SMAD4-216ENST00000593223 GP2P55259 537 aaKnown RBP7.6□□□□□ -1.19
SMAD4-216ENST00000593223 ZP2Q05996 745 aa7.6□□□□□ -1.19
SMAD4-216ENST00000593223 SF3A1Q15459 793 aaKnown RBP7.6□□□□□ -1.19
SMAD4-216ENST00000593223 NOL9Q5SY16 702 aaKnown RBP7.6□□□□□ -1.19
SMAD4-216ENST00000593223 AXDND1Q5T1B0 1012 aaPredicted RBP7.6□□□□□ -1.19
SMAD4-216ENST00000593223 DCAF15Q66K64 600 aa7.6□□□□□ -1.19
SMAD4-216ENST00000593223 VHLLQ6RSH7 139 aa7.6□□□□□ -1.19
SMAD4-216ENST00000593223 ANKS3Q6ZW76 656 aa7.6□□□□□ -1.19
SMAD4-216ENST00000593223 TMPRSS7Q7RTY8 843 aa7.6□□□□□ -1.19
SMAD4-216ENST00000593223 TMC3Q7Z5M5 1100 aa7.6□□□□□ -1.19
SMAD4-216ENST00000593223 TSPYL5Q86VY4 417 aaPredicted RBP7.6□□□□□ -1.19
SMAD4-216ENST00000593223 CREG2Q8IUH2 290 aa7.6□□□□□ -1.19
SMAD4-216ENST00000593223 C7orf61Q8IZ16 206 aa7.6□□□□□ -1.19
SMAD4-216ENST00000593223 DUSP13Q9UII6 198 aa7.6□□□□□ -1.19
SMAD4-216ENST00000593223 MEIS1O00470 390 aa7.59□□□□□ -1.19
SMAD4-216ENST00000593223 LTKP29376 864 aa7.59□□□□□ -1.19
SMAD4-216ENST00000593223 TCEAL1Q15170 157 aa7.59□□□□□ -1.19
SMAD4-216ENST00000593223 KIAA1211LQ6NV74 962 aa7.59□□□□□ -1.19
SMAD4-216ENST00000593223 ENOX1Q8TC92 643 aaKnown RBP7.59□□□□□ -1.19
SMAD4-216ENST00000593223 HNRNPLLQ8WVV9 542 aaKnown RBP7.59□□□□□ -1.19
SMAD4-216ENST00000593223 DSCC1Q9BVC3 393 aa7.59□□□□□ -1.19
SMAD4-216ENST00000593223 KRTAP9-9Q9BYP9 154 aa7.59□□□□□ -1.19
SMAD4-216ENST00000593223 KRTAP9-4Q9BYQ2 154 aa7.59□□□□□ -1.19
SMAD4-216ENST00000593223 CARS2Q9HA77 564 aaKnown RBP7.59□□□□□ -1.19
SMAD4-216ENST00000593223 GFOD1Q9NXC2 390 aa7.59□□□□□ -1.19
SMAD4-216ENST00000593223 SSU72P8A0A1W2PR75 194 aa7.58□□□□□ -1.2
SMAD4-216ENST00000593223 SRFP11831 508 aa7.58□□□□□ -1.2
SMAD4-216ENST00000593223 FXNQ16595 210 aa7.58□□□□□ -1.2
SMAD4-216ENST00000593223 HEATR6Q6AI08 1181 aaKnown RBP7.58□□□□□ -1.2
SMAD4-216ENST00000593223 PI4K2BQ8TCG2 481 aa7.58□□□□□ -1.2
SMAD4-216ENST00000593223 CHST7Q9NS84 486 aa7.58□□□□□ -1.2
SMAD4-216ENST00000593223 CCDC180Q9P1Z9 1646 aa7.57□□□□□ -1.2
SMAD4-216ENST00000593223 SIGLEC6O43699 453 aa7.57□□□□□ -1.2
SMAD4-216ENST00000593223 DDAH1O94760 285 aa7.57□□□□□ -1.2
SMAD4-216ENST00000593223 PRAMEF1O95521 474 aa7.57□□□□□ -1.2
SMAD4-216ENST00000593223 FUT4P22083 530 aa7.57□□□□□ -1.2
SMAD4-216ENST00000593223 NFXL1Q6ZNB6 911 aa7.57□□□□□ -1.2
SMAD4-216ENST00000593223 ADAT2Q7Z6V5 191 aaKnown RBP7.57□□□□□ -1.2
SMAD4-216ENST00000593223 CKAP2LQ8IYA6 745 aa7.57□□□□□ -1.2
SMAD4-216ENST00000593223 SYTL5Q8TDW5 730 aaPredicted RBP7.57□□□□□ -1.2
SMAD4-216ENST00000593223 SREK1Q8WXA9 508 aaKnown RBP7.57□□□□□ -1.2
SMAD4-216ENST00000593223 SYTL4Q96C24 671 aaPredicted RBP7.57□□□□□ -1.2
SMAD4-216ENST00000593223 HAUS7Q99871 368 aa7.57□□□□□ -1.2
SMAD4-216ENST00000593223 TRIM55Q9BYV6 548 aa7.57□□□□□ -1.2
SMAD4-216ENST00000593223 LMCD1Q9NZU5 365 aa7.57□□□□□ -1.2
SMAD4-216ENST00000593223 ITGA4P13612 1032 aa7.56□□□□□ -1.2
SMAD4-216ENST00000593223 CD247P20963 164 aa7.56□□□□□ -1.2
SMAD4-216ENST00000593223 EGR3Q06889 387 aa7.56□□□□□ -1.2
SMAD4-216ENST00000593223 NCAPHQ15003 741 aa7.56□□□□□ -1.2
SMAD4-216ENST00000593223 ANKRD39Q53RE8 183 aa7.56□□□□□ -1.2
SMAD4-216ENST00000593223 C6orf15Q6UXA7 325 aaPredicted RBP7.56□□□□□ -1.2
SMAD4-216ENST00000593223 WFDC3Q8IUB2 231 aa7.56□□□□□ -1.2
SMAD4-216ENST00000593223 ABI1Q8IZP0 508 aa7.56□□□□□ -1.2
SMAD4-216ENST00000593223 ZNF655Q8N720 491 aaPredicted RBP7.56□□□□□ -1.2
SMAD4-216ENST00000593223 DAGLBQ8NCG7 672 aa7.56□□□□□ -1.2
SMAD4-216ENST00000593223 DHX38Q92620 1227 aaKnown RBP7.56□□□□□ -1.2
SMAD4-216ENST00000593223 BRF1Q92994 677 aa7.56□□□□□ -1.2
SMAD4-216ENST00000593223 HDAC8Q9BY41 377 aa7.56□□□□□ -1.2
SMAD4-216ENST00000593223 GBP3Q9H0R5 595 aa7.56□□□□□ -1.2
SMAD4-216ENST00000593223 GP6Q9HCN6 339 aa7.56□□□□□ -1.2
SMAD4-216ENST00000593223 PRDM7Q9NQW5 492 aa7.56□□□□□ -1.2
SMAD4-216ENST00000593223 ST7Q9NRC1 585 aa7.56□□□□□ -1.2
SMAD4-216ENST00000593223 MINPP1Q9UNW1 487 aa7.56□□□□□ -1.2
SMAD4-216ENST00000593223 ZNF451Q9Y4E5 1061 aa7.56□□□□□ -1.2
SMAD4-216ENST00000593223 ESR1P03372 595 aa7.55□□□□□ -1.2
SMAD4-216ENST00000593223 GAB4Q2WGN9 574 aa7.55□□□□□ -1.2
SMAD4-216ENST00000593223 FAM178BQ8IXR5 827 aa7.55□□□□□ -1.2
SMAD4-216ENST00000593223 KLHL6Q8WZ60 621 aa7.55□□□□□ -1.2
SMAD4-216ENST00000593223 TCTN2Q96GX1 697 aa7.55□□□□□ -1.2
SMAD4-216ENST00000593223 FGD4Q96M96 766 aa7.55□□□□□ -1.2
SMAD4-216ENST00000593223 SUGT1Q9Y2Z0 365 aa7.55□□□□□ -1.2
SMAD4-216ENST00000593223 PCDHA11Q9Y5I1 949 aa7.55□□□□□ -1.2
SMAD4-216ENST00000593223 OAS3Q9Y6K5 1087 aaKnown RBP7.55□□□□□ -1.2
SMAD4-216ENST00000593223 U2SURPO15042 1029 aaKnown RBP7.54□□□□□ -1.2
SMAD4-216ENST00000593223 SHOXO15266 292 aa7.54□□□□□ -1.2
SMAD4-216ENST00000593223 PPM1BO75688 479 aa7.54□□□□□ -1.2
SMAD4-216ENST00000593223 EPHX1P07099 455 aa7.54□□□□□ -1.2
SMAD4-216ENST00000593223 PCBP3P57721 371 aaKnown RBP7.54□□□□□ -1.2
SMAD4-216ENST00000593223 CWF19L1Q69YN2 538 aaKnown RBP7.54□□□□□ -1.2
SMAD4-216ENST00000593223 SLC23A3Q6PIS1 610 aa7.54□□□□□ -1.2
SMAD4-216ENST00000593223 ADCY4Q8NFM4 1077 aa7.54□□□□□ -1.2
SMAD4-216ENST00000593223 HIRIP3Q9BW71 556 aaPredicted RBP7.54□□□□□ -1.2
SMAD4-216ENST00000593223 PRR13Q9NZ81 148 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms