RNA–Protein interactions for RNA: ENST00000593168.5

VMP1-217, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-217ENST00000593168 NBPF12Q5TAG4 269 aaPredicted RBP15.67■□□□□ 0.1
VMP1-217ENST00000593168 LARP1BQ659C4 914 aaKnown RBP15.67■□□□□ 0.1
VMP1-217ENST00000593168 FAM184AQ8NB25 1140 aa15.67■□□□□ 0.1
VMP1-217ENST00000593168 RGS22Q8NE09 1264 aa15.67■□□□□ 0.1
VMP1-217ENST00000593168 NUP133Q8WUM0 1156 aa15.67■□□□□ 0.1
VMP1-217ENST00000593168 TMEM47Q9BQJ4 181 aa15.67■□□□□ 0.1
VMP1-217ENST00000593168 RBM28Q9NW13 759 aaKnown RBP15.67■□□□□ 0.1
VMP1-217ENST00000593168 MTMR4Q9NYA4 1195 aa15.67■□□□□ 0.1
VMP1-217ENST00000593168 PPP2R3BQ9Y5P8 575 aa15.67■□□□□ 0.1
VMP1-217ENST00000593168 USP2O75604 605 aaPredicted RBP15.66■□□□□ 0.1
VMP1-217ENST00000593168 FDPSP14324 419 aaKnown RBP15.66■□□□□ 0.1
VMP1-217ENST00000593168 IFNAR1P17181 557 aa15.66■□□□□ 0.1
VMP1-217ENST00000593168 PNMA1Q8ND90 353 aa15.66■□□□□ 0.1
VMP1-217ENST00000593168 TNPO1Q92973 898 aaKnown RBP15.66■□□□□ 0.1
VMP1-217ENST00000593168 DDX11Q96FC9 970 aa15.66■□□□□ 0.1
VMP1-217ENST00000593168 CEP95Q96GE4 821 aa15.66■□□□□ 0.1
VMP1-217ENST00000593168 ERO1AQ96HE7 468 aa15.66■□□□□ 0.1
VMP1-217ENST00000593168 PTPN18Q99952 460 aa15.66■□□□□ 0.1
VMP1-217ENST00000593168 TMEM39BQ9GZU3 492 aa15.66■□□□□ 0.1
VMP1-217ENST00000593168 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.66■□□□□ 0.1
VMP1-217ENST00000593168 STX8Q9UNK0 236 aa15.66■□□□□ 0.1
VMP1-217ENST00000593168 SLURP2P0DP57 97 aa15.65■□□□□ 0.1
VMP1-217ENST00000593168 EN2P19622 333 aaPredicted RBP15.65■□□□□ 0.1
VMP1-217ENST00000593168 TMEM179Q6ZVK1 233 aa15.65■□□□□ 0.1
VMP1-217ENST00000593168 CCDC144CPQ8IYA2 1237 aa15.65■□□□□ 0.1
VMP1-217ENST00000593168 CTCFLQ8NI51 663 aaPredicted RBP15.65■□□□□ 0.1
VMP1-217ENST00000593168 TEPSINQ96N21 525 aa15.65■□□□□ 0.1
VMP1-217ENST00000593168 KANSL2Q9H9L4 492 aa15.65■□□□□ 0.1
VMP1-217ENST00000593168 ORC3Q9UBD5 711 aaPredicted RBP15.65■□□□□ 0.1
VMP1-217ENST00000593168 MTMR6Q9Y217 621 aa15.65■□□□□ 0.1
VMP1-217ENST00000593168 STK36Q9NRP7 1315 aa15.65■□□□□ 0.1
VMP1-217ENST00000593168 GREB1LQ9C091 1923 aaPredicted RBP15.64■□□□□ 0.09
VMP1-217ENST00000593168 UNCXA6NJT0 531 aa15.64■□□□□ 0.09
VMP1-217ENST00000593168 FAM196BA6NMK8 535 aa15.64■□□□□ 0.09
VMP1-217ENST00000593168 DTNBO60941 627 aa15.64■□□□□ 0.09
VMP1-217ENST00000593168 TTLL1O95922 423 aa15.64■□□□□ 0.09
VMP1-217ENST00000593168 KIF5BP33176 963 aa15.64■□□□□ 0.09
VMP1-217ENST00000593168 ABCB5Q2M3G0 1257 aa15.64■□□□□ 0.09
VMP1-217ENST00000593168 SUPT20HL1Q3ZLR7 823 aa15.64■□□□□ 0.09
VMP1-217ENST00000593168 CLEC17AQ6ZS10 378 aa15.64■□□□□ 0.09
VMP1-217ENST00000593168 MKL1Q969V6 931 aa15.64■□□□□ 0.09
VMP1-217ENST00000593168 ARMC5Q96C12 935 aa15.64■□□□□ 0.09
VMP1-217ENST00000593168 EFCC1Q9HA90 598 aa15.64■□□□□ 0.09
VMP1-217ENST00000593168 KIAA0100Q14667 2235 aaKnown RBP15.63■□□□□ 0.09
VMP1-217ENST00000593168 TESPA1A2RU30 521 aaPredicted RBP15.63■□□□□ 0.09
VMP1-217ENST00000593168 MPHOSPH10O00566 681 aaKnown RBP15.63■□□□□ 0.09
VMP1-217ENST00000593168 FMNL1O95466 1100 aaPredicted RBP15.63■□□□□ 0.09
VMP1-217ENST00000593168 ZSCAN22P10073 491 aaPredicted RBP15.63■□□□□ 0.09
VMP1-217ENST00000593168 IREB2P48200 963 aaKnown RBP15.63■□□□□ 0.09
VMP1-217ENST00000593168 GNAQP50148 359 aa15.63■□□□□ 0.09
VMP1-217ENST00000593168 SP3Q02447 781 aa15.63■□□□□ 0.09
VMP1-217ENST00000593168 SSRP1Q08945 709 aaKnown RBP15.63■□□□□ 0.09
VMP1-217ENST00000593168 GRM4Q14833 912 aa15.63■□□□□ 0.09
VMP1-217ENST00000593168 OTUD7BQ6GQQ9 843 aa15.63■□□□□ 0.09
VMP1-217ENST00000593168 TMTC3Q6ZXV5 915 aa15.63■□□□□ 0.09
VMP1-217ENST00000593168 CABP5Q9NP86 173 aa15.63■□□□□ 0.09
VMP1-217ENST00000593168 NYAP2Q9P242 653 aa15.63■□□□□ 0.09
VMP1-217ENST00000593168 ZSWIM8A7E2V4 1837 aa15.63■□□□□ 0.09
VMP1-217ENST00000593168 NBPF11Q86T75 865 aa15.62■□□□□ 0.09
VMP1-217ENST00000593168 CDAN1Q8IWY9 1227 aa15.62■□□□□ 0.09
VMP1-217ENST00000593168 TRIM22Q8IYM9 498 aa15.62■□□□□ 0.09
VMP1-217ENST00000593168 ANKRD13AQ8IZ07 590 aa15.62■□□□□ 0.09
VMP1-217ENST00000593168 WASF1Q92558 559 aa15.62■□□□□ 0.09
VMP1-217ENST00000593168 HOOK2Q96ED9 719 aa15.62■□□□□ 0.09
VMP1-217ENST00000593168 GBP4Q96PP9 640 aa15.62■□□□□ 0.09
VMP1-217ENST00000593168 RNF26Q9BY78 433 aaPredicted RBP15.62■□□□□ 0.09
VMP1-217ENST00000593168 ELP3Q9H9T3 547 aa15.62■□□□□ 0.09
VMP1-217ENST00000593168 CLIP2Q9UDT6 1046 aa15.62■□□□□ 0.09
VMP1-217ENST00000593168 PALM3A6NDB9 673 aaPredicted RBP15.61■□□□□ 0.09
VMP1-217ENST00000593168 SMARCA1P28370 1054 aa15.61■□□□□ 0.09
VMP1-217ENST00000593168 GUCY1A2P33402 732 aa15.61■□□□□ 0.09
VMP1-217ENST00000593168 FUT2Q10981 343 aa15.61■□□□□ 0.09
VMP1-217ENST00000593168 RRP1BQ14684 758 aaKnown RBP15.61■□□□□ 0.09
VMP1-217ENST00000593168 MIGA2Q7L4E1 593 aa15.61■□□□□ 0.09
VMP1-217ENST00000593168 PHKBQ93100 1093 aa15.61■□□□□ 0.09
VMP1-217ENST00000593168 OPTNQ96CV9 577 aa15.61■□□□□ 0.09
VMP1-217ENST00000593168 LZTS2Q9BRK4 669 aa15.61■□□□□ 0.09
VMP1-217ENST00000593168 SLC26A6Q9BXS9 759 aa15.61■□□□□ 0.09
VMP1-217ENST00000593168 GINM1Q9NU53 330 aa15.61■□□□□ 0.09
VMP1-217ENST00000593168 SYNPO2Q9UMS6 1093 aa15.61■□□□□ 0.09
VMP1-217ENST00000593168 VPS37CA5D8V6 355 aaPredicted RBP15.6■□□□□ 0.09
VMP1-217ENST00000593168 H3BQV1 296 aa15.6■□□□□ 0.09
VMP1-217ENST00000593168 PRPF3O43395 683 aaKnown RBP15.6■□□□□ 0.09
VMP1-217ENST00000593168 GDF11O95390 407 aa15.6■□□□□ 0.09
VMP1-217ENST00000593168 DEXIO95424 95 aa15.6■□□□□ 0.09
VMP1-217ENST00000593168 F13A1P00488 732 aa15.6■□□□□ 0.09
VMP1-217ENST00000593168 GH2P01242 217 aa15.6■□□□□ 0.09
VMP1-217ENST00000593168 FXR1P51114 621 aaKnown RBP eCLIP15.6■□□□□ 0.09
VMP1-217ENST00000593168 SEPT2Q15019 361 aa15.6■□□□□ 0.09
VMP1-217ENST00000593168 NFKBIBQ15653 356 aa15.6■□□□□ 0.09
VMP1-217ENST00000593168 CNKSR2Q8WXI2 1034 aa15.6■□□□□ 0.09
VMP1-217ENST00000593168 MS4A4AQ96JQ5 239 aa15.6■□□□□ 0.09
VMP1-217ENST00000593168 RBM27Q9P2N5 1060 aaKnown RBP15.6■□□□□ 0.09
VMP1-217ENST00000593168 MAD2L2Q9UI95 211 aa15.6■□□□□ 0.09
VMP1-217ENST00000593168 ATP6V1DQ9Y5K8 247 aa15.6■□□□□ 0.09
VMP1-217ENST00000593168 PHF20L1A8MW92 1017 aa15.59■□□□□ 0.09
VMP1-217ENST00000593168 PPFIA3O75145 1194 aa15.59■□□□□ 0.09
VMP1-217ENST00000593168 PLEKHA8P1O95397 391 aa15.59■□□□□ 0.09
VMP1-217ENST00000593168 BAG4O95429 457 aaKnown RBP15.59■□□□□ 0.09
VMP1-217ENST00000593168 PARP1P09874 1014 aaKnown RBP15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms