RNA–Protein interactions for RNA: ENST00000591519.1

VPS4B-207, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 2 BASIC

Gene VPS4B, Length 551 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-207ENST00000591519 IGHA2P01877 340 aa12.56□□□□□ -0.4
VPS4B-207ENST00000591519 HOXC6P09630 235 aa12.56□□□□□ -0.4
VPS4B-207ENST00000591519 ZKSCAN1P17029 563 aaPredicted RBP12.56□□□□□ -0.4
VPS4B-207ENST00000591519 PTPREP23469 700 aa12.56□□□□□ -0.4
VPS4B-207ENST00000591519 COG2Q14746 738 aa12.56□□□□□ -0.4
VPS4B-207ENST00000591519 UBE3CQ15386 1083 aa12.56□□□□□ -0.4
VPS4B-207ENST00000591519 SIAH1Q8IUQ4 282 aa12.56□□□□□ -0.4
VPS4B-207ENST00000591519 SDR42E1Q8WUS8 393 aa12.56□□□□□ -0.4
VPS4B-207ENST00000591519 APBA2Q99767 749 aa12.56□□□□□ -0.4
VPS4B-207ENST00000591519 BOLA2Q9H3K6 86 aa12.56□□□□□ -0.4
VPS4B-207ENST00000591519 RPAP3Q9H6T3 665 aaPredicted RBP12.56□□□□□ -0.4
VPS4B-207ENST00000591519 BTBD7Q9P203 1132 aa12.56□□□□□ -0.4
VPS4B-207ENST00000591519 RANBP2P49792 3224 aaKnown RBP12.56□□□□□ -0.4
VPS4B-207ENST00000591519 SPDYE16A6NNV3 312 aaPredicted RBP12.55□□□□□ -0.4
VPS4B-207ENST00000591519 COL6A1P12109 1028 aa12.55□□□□□ -0.4
VPS4B-207ENST00000591519 BMP8BP34820 402 aa12.55□□□□□ -0.4
VPS4B-207ENST00000591519 CCL14Q16627 93 aa12.55□□□□□ -0.4
VPS4B-207ENST00000591519 DMRTA1Q5VZB9 504 aa12.55□□□□□ -0.4
VPS4B-207ENST00000591519 TMEM179Q6ZVK1 233 aa12.55□□□□□ -0.4
VPS4B-207ENST00000591519 CCDC17Q96LX7 622 aa12.55□□□□□ -0.4
VPS4B-207ENST00000591519 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.55□□□□□ -0.4
VPS4B-207ENST00000591519 C11orf49Q9H6J7 331 aa12.55□□□□□ -0.4
VPS4B-207ENST00000591519 ALPK3Q96L96 1907 aa12.54□□□□□ -0.4
VPS4B-207ENST00000591519 PRKAB2O43741 272 aa12.54□□□□□ -0.4
VPS4B-207ENST00000591519 STRNO43815 780 aa12.54□□□□□ -0.4
VPS4B-207ENST00000591519 CYP2D6P10635 497 aa12.54□□□□□ -0.4
VPS4B-207ENST00000591519 GRB14Q14449 540 aa12.54□□□□□ -0.4
VPS4B-207ENST00000591519 SLFNL1Q499Z3 407 aa12.54□□□□□ -0.4
VPS4B-207ENST00000591519 C12orf60Q5U649 245 aa12.54□□□□□ -0.4
VPS4B-207ENST00000591519 LPAR1Q92633 364 aa12.54□□□□□ -0.4
VPS4B-207ENST00000591519 GDF15Q99988 308 aa12.54□□□□□ -0.4
VPS4B-207ENST00000591519 LRRCC1Q9C099 1032 aa12.54□□□□□ -0.4
VPS4B-207ENST00000591519 ARMT1Q9H993 441 aa12.54□□□□□ -0.4
VPS4B-207ENST00000591519 STAP2Q9UGK3 403 aa12.54□□□□□ -0.4
VPS4B-207ENST00000591519 TMX2Q9Y320 296 aa12.54□□□□□ -0.4
VPS4B-207ENST00000591519 MBD4O95243 580 aa12.53□□□□□ -0.4
VPS4B-207ENST00000591519 CCND3P30281 292 aaPredicted RBP12.53□□□□□ -0.4
VPS4B-207ENST00000591519 KIAA1755Q5JYT7 1200 aa12.53□□□□□ -0.4
VPS4B-207ENST00000591519 C20orf194Q5TEA3 1177 aa12.53□□□□□ -0.4
VPS4B-207ENST00000591519 ZSCAN25Q6NSZ9 544 aa12.53□□□□□ -0.4
VPS4B-207ENST00000591519 MB21D1Q8N884 522 aa12.53□□□□□ -0.4
VPS4B-207ENST00000591519 SLC44A5Q8NCS7 719 aa12.53□□□□□ -0.4
VPS4B-207ENST00000591519 SHCBP1Q8NEM2 672 aa12.53□□□□□ -0.4
VPS4B-207ENST00000591519 DYNLL2Q96FJ2 89 aa12.53□□□□□ -0.4
VPS4B-207ENST00000591519 FLRT1Q9NZU1 646 aa12.53□□□□□ -0.4
VPS4B-207ENST00000591519 NAV1Q8NEY1 1877 aa12.53□□□□□ -0.4
VPS4B-207ENST00000591519 RLFQ13129 1914 aa12.52□□□□□ -0.4
VPS4B-207ENST00000591519 SZT2Q5T011 3432 aa12.52□□□□□ -0.4
VPS4B-207ENST00000591519 USP17L12C9JPN9 530 aa12.52□□□□□ -0.41
VPS4B-207ENST00000591519 USP17L21D6R901 530 aa12.52□□□□□ -0.41
VPS4B-207ENST00000591519 MPHOSPH10O00566 681 aaKnown RBP12.52□□□□□ -0.41
VPS4B-207ENST00000591519 AKR1B1P15121 316 aa12.52□□□□□ -0.41
VPS4B-207ENST00000591519 CDK8P49336 464 aa12.52□□□□□ -0.41
VPS4B-207ENST00000591519 MFSD14CQ5VZR4 134 aa12.52□□□□□ -0.41
VPS4B-207ENST00000591519 NPLOC4Q8TAT6 608 aa12.52□□□□□ -0.41
VPS4B-207ENST00000591519 MOV10L1Q9BXT6 1211 aaKnown RBP12.52□□□□□ -0.41
VPS4B-207ENST00000591519 DCTPP1Q9H773 170 aa12.52□□□□□ -0.41
VPS4B-207ENST00000591519 CWC22Q9HCG8 908 aaKnown RBP12.52□□□□□ -0.41
VPS4B-207ENST00000591519 ADAMTS5Q9UNA0 930 aa12.52□□□□□ -0.41
VPS4B-207ENST00000591519 IVNS1ABPQ9Y6Y0 642 aa12.52□□□□□ -0.41
VPS4B-207ENST00000591519 PFASO15067 1338 aa12.52□□□□□ -0.41
VPS4B-207ENST00000591519 MSCO60682 206 aa12.51□□□□□ -0.41
VPS4B-207ENST00000591519 CHGBP05060 677 aa12.51□□□□□ -0.41
VPS4B-207ENST00000591519 ATP2B2Q01814 1243 aa12.51□□□□□ -0.41
VPS4B-207ENST00000591519 PPP4R3BQ5MIZ7 849 aa12.51□□□□□ -0.41
VPS4B-207ENST00000591519 CTR9Q6PD62 1173 aa12.51□□□□□ -0.41
VPS4B-207ENST00000591519 C16orf86Q6ZW13 317 aa12.51□□□□□ -0.41
VPS4B-207ENST00000591519 ABRAQ8N0Z2 381 aa12.51□□□□□ -0.41
VPS4B-207ENST00000591519 DDRGK1Q96HY6 314 aa12.51□□□□□ -0.41
VPS4B-207ENST00000591519 SPATC1LQ9H0A9 340 aa12.51□□□□□ -0.41
VPS4B-207ENST00000591519 PUS7LQ9H0K6 701 aaKnown RBP12.51□□□□□ -0.41
VPS4B-207ENST00000591519 MROH8Q9H579 483 aa12.51□□□□□ -0.41
VPS4B-207ENST00000591519 SH2D4AQ9H788 454 aa12.51□□□□□ -0.41
VPS4B-207ENST00000591519 VCPKMTQ9H867 229 aa12.51□□□□□ -0.41
VPS4B-207ENST00000591519 KANSL2Q9H9L4 492 aa12.51□□□□□ -0.41
VPS4B-207ENST00000591519 ARHGEF10LQ9HCE6 1279 aa12.51□□□□□ -0.41
VPS4B-207ENST00000591519 ECHDC1Q9NTX5 307 aa12.51□□□□□ -0.41
VPS4B-207ENST00000591519 SMIM22K7EJ46 135 aa12.5□□□□□ -0.41
VPS4B-207ENST00000591519 SBK1Q52WX2 424 aa12.5□□□□□ -0.41
VPS4B-207ENST00000591519 WDR78Q5VTH9 848 aa12.5□□□□□ -0.41
VPS4B-207ENST00000591519 OLFML2BQ68BL8 750 aa12.5□□□□□ -0.41
VPS4B-207ENST00000591519 GIMAP6Q6P9H5 292 aa12.5□□□□□ -0.41
VPS4B-207ENST00000591519 AMOTL1Q8IY63 956 aa12.5□□□□□ -0.41
VPS4B-207ENST00000591519 C7orf61Q8IZ16 206 aa12.5□□□□□ -0.41
VPS4B-207ENST00000591519 STRBPQ96SI9 672 aaKnown RBP12.5□□□□□ -0.41
VPS4B-207ENST00000591519 TANGO6Q9C0B7 1094 aa12.5□□□□□ -0.41
VPS4B-207ENST00000591519 DDX20Q9UHI6 824 aaKnown RBP12.5□□□□□ -0.41
VPS4B-207ENST00000591519 SLC4A4Q9Y6R1 1079 aa12.5□□□□□ -0.41
VPS4B-207ENST00000591519 BAZ2AQ9UIF9 1905 aaKnown RBP12.5□□□□□ -0.41
VPS4B-207ENST00000591519 CYP2D7A0A087X1C5 515 aa12.49□□□□□ -0.41
VPS4B-207ENST00000591519 WDR46O15213 610 aaKnown RBP12.49□□□□□ -0.41
VPS4B-207ENST00000591519 SMARCA5O60264 1052 aaPredicted RBP12.49□□□□□ -0.41
VPS4B-207ENST00000591519 ERCC3P19447 782 aa12.49□□□□□ -0.41
VPS4B-207ENST00000591519 ADORA2AP29274 412 aa12.49□□□□□ -0.41
VPS4B-207ENST00000591519 ICA1Q05084 483 aa12.49□□□□□ -0.41
VPS4B-207ENST00000591519 DPP9Q86TI2 863 aa12.49□□□□□ -0.41
VPS4B-207ENST00000591519 KBTBD3Q8NAB2 608 aa12.49□□□□□ -0.41
VPS4B-207ENST00000591519 TRPV1Q8NER1 839 aa12.49□□□□□ -0.41
VPS4B-207ENST00000591519 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.49□□□□□ -0.41
VPS4B-207ENST00000591519 BCL11AQ9H165 835 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms