RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 IRX6P78412 446 aaPredicted RBP13.46□□□□□ -0.25
SMAD4-211ENST00000590499 PKDCCQ504Y2 493 aa13.46□□□□□ -0.25
SMAD4-211ENST00000590499 C12orf60Q5U649 245 aa13.46□□□□□ -0.25
SMAD4-211ENST00000590499 FBXO46Q6PJ61 603 aaPredicted RBP13.46□□□□□ -0.25
SMAD4-211ENST00000590499 CHD1LQ86WJ1 897 aa13.46□□□□□ -0.25
SMAD4-211ENST00000590499 SLC4A4Q9Y6R1 1079 aa13.46□□□□□ -0.25
SMAD4-211ENST00000590499 GREB1LQ9C091 1923 aaPredicted RBP13.45□□□□□ -0.26
SMAD4-211ENST00000590499 CYP2D7A0A087X1C5 515 aa13.45□□□□□ -0.26
SMAD4-211ENST00000590499 GSG1L2A8MUP6 293 aa13.45□□□□□ -0.26
SMAD4-211ENST00000590499 USP17L12C9JPN9 530 aa13.45□□□□□ -0.26
SMAD4-211ENST00000590499 USP17L21D6R901 530 aa13.45□□□□□ -0.26
SMAD4-211ENST00000590499 RNF223E7ERA6 249 aa13.45□□□□□ -0.26
SMAD4-211ENST00000590499 GPAA1O43292 621 aa13.45□□□□□ -0.26
SMAD4-211ENST00000590499 SLC4A3P48751 1232 aa13.45□□□□□ -0.26
SMAD4-211ENST00000590499 LACTBP83111 547 aaPredicted RBP13.45□□□□□ -0.26
SMAD4-211ENST00000590499 MTMR2Q13614 643 aa13.45□□□□□ -0.26
SMAD4-211ENST00000590499 HIC1Q14526 733 aa13.45□□□□□ -0.26
SMAD4-211ENST00000590499 LRRFIP1Q32MZ4 808 aaKnown RBP13.45□□□□□ -0.26
SMAD4-211ENST00000590499 CERKLQ49MI3 558 aaPredicted RBP13.45□□□□□ -0.26
SMAD4-211ENST00000590499 ZMYM1Q5SVZ6 1142 aa13.45□□□□□ -0.26
SMAD4-211ENST00000590499 B4GALNT3Q6L9W6 998 aa13.45□□□□□ -0.26
SMAD4-211ENST00000590499 GIMAP6Q6P9H5 292 aa13.45□□□□□ -0.26
SMAD4-211ENST00000590499 SLC44A5Q8NCS7 719 aa13.45□□□□□ -0.26
SMAD4-211ENST00000590499 DYNLL2Q96FJ2 89 aa13.45□□□□□ -0.26
SMAD4-211ENST00000590499 FSD1Q9BTV5 496 aa13.45□□□□□ -0.26
SMAD4-211ENST00000590499 CPA4Q9UI42 421 aa13.45□□□□□ -0.26
SMAD4-211ENST00000590499 TRIM17Q9Y577 477 aa13.45□□□□□ -0.26
SMAD4-211ENST00000590499 C19orf81C9J6K1 198 aa13.44□□□□□ -0.26
SMAD4-211ENST00000590499 USP17L10C9JJH3 530 aa13.44□□□□□ -0.26
SMAD4-211ENST00000590499 CTGFP29279 349 aa13.44□□□□□ -0.26
SMAD4-211ENST00000590499 ABCB5Q2M3G0 1257 aa13.44□□□□□ -0.26
SMAD4-211ENST00000590499 SBK1Q52WX2 424 aa13.44□□□□□ -0.26
SMAD4-211ENST00000590499 CTR9Q6PD62 1173 aa13.44□□□□□ -0.26
SMAD4-211ENST00000590499 PLEKHM2Q8IWE5 1019 aa13.44□□□□□ -0.26
SMAD4-211ENST00000590499 EVI5LQ96CN4 794 aa13.44□□□□□ -0.26
SMAD4-211ENST00000590499 SEC62Q99442 399 aaKnown RBP13.44□□□□□ -0.26
SMAD4-211ENST00000590499 ARHGAP39Q9C0H5 1083 aa13.44□□□□□ -0.26
SMAD4-211ENST00000590499 OSBPL3Q9H4L5 887 aa13.44□□□□□ -0.26
SMAD4-211ENST00000590499 EFCC1Q9HA90 598 aa13.44□□□□□ -0.26
SMAD4-211ENST00000590499 EPB41L4AQ9HCS5 686 aaPredicted RBP13.44□□□□□ -0.26
SMAD4-211ENST00000590499 SWAP70Q9UH65 585 aa13.44□□□□□ -0.26
SMAD4-211ENST00000590499 DOCK3Q8IZD9 2030 aa13.44□□□□□ -0.26
SMAD4-211ENST00000590499 ROBO3Q96MS0 1386 aa13.44□□□□□ -0.26
SMAD4-211ENST00000590499 RCCD1A6NED2 376 aa13.43□□□□□ -0.26
SMAD4-211ENST00000590499 C16orf86Q6ZW13 317 aa13.43□□□□□ -0.26
SMAD4-211ENST00000590499 DDRGK1Q96HY6 314 aa13.43□□□□□ -0.26
SMAD4-211ENST00000590499 C12orf42Q96LP6 360 aa13.43□□□□□ -0.26
SMAD4-211ENST00000590499 ARPP21Q9UBL0 812 aaPredicted RBP13.43□□□□□ -0.26
SMAD4-211ENST00000590499 PTPN22Q9Y2R2 807 aa13.43□□□□□ -0.26
SMAD4-211ENST00000590499 KIAA0100Q14667 2235 aaKnown RBP13.43□□□□□ -0.26
SMAD4-211ENST00000590499 MKI67P46013 3256 aaKnown RBP13.42□□□□□ -0.26
SMAD4-211ENST00000590499 CCDC85CA6NKD9 419 aa13.42□□□□□ -0.26
SMAD4-211ENST00000590499 FOXP2O15409 715 aa13.42□□□□□ -0.26
SMAD4-211ENST00000590499 GNAT2P19087 354 aa13.42□□□□□ -0.26
SMAD4-211ENST00000590499 HOXA7P31268 230 aaPredicted RBP13.42□□□□□ -0.26
SMAD4-211ENST00000590499 CDK8P49336 464 aa13.42□□□□□ -0.26
SMAD4-211ENST00000590499 SEPT2Q15019 361 aa13.42□□□□□ -0.26
SMAD4-211ENST00000590499 TICAM2Q86XR7 235 aa13.42□□□□□ -0.26
SMAD4-211ENST00000590499 ACER1Q8TDN7 264 aa13.42□□□□□ -0.26
SMAD4-211ENST00000590499 TMEM134Q9H6X4 195 aa13.42□□□□□ -0.26
SMAD4-211ENST00000590499 AKR1B1P15121 316 aa13.41□□□□□ -0.26
SMAD4-211ENST00000590499 PRR20EP86478 221 aa13.41□□□□□ -0.26
SMAD4-211ENST00000590499 PRR20CP86479 221 aa13.41□□□□□ -0.26
SMAD4-211ENST00000590499 PRR20DP86480 221 aa13.41□□□□□ -0.26
SMAD4-211ENST00000590499 PRR20BP86481 221 aa13.41□□□□□ -0.26
SMAD4-211ENST00000590499 PRR20AP86496 221 aa13.41□□□□□ -0.26
SMAD4-211ENST00000590499 PABPC4Q13310 644 aaKnown RBP eCLIP13.41□□□□□ -0.26
SMAD4-211ENST00000590499 RAB3GAP1Q15042 981 aa13.41□□□□□ -0.26
SMAD4-211ENST00000590499 USP17L2Q6R6M4 530 aa13.41□□□□□ -0.26
SMAD4-211ENST00000590499 TMEM179Q6ZVK1 233 aa13.41□□□□□ -0.26
SMAD4-211ENST00000590499 AMOTL1Q8IY63 956 aa13.41□□□□□ -0.26
SMAD4-211ENST00000590499 TRIM47Q96LD4 638 aa13.41□□□□□ -0.26
SMAD4-211ENST00000590499 KIAA1683Q9H0B3 1180 aa13.41□□□□□ -0.26
SMAD4-211ENST00000590499 ASCC2Q9H1I8 757 aaPredicted RBP13.41□□□□□ -0.26
SMAD4-211ENST00000590499 CABP5Q9NP86 173 aa13.41□□□□□ -0.26
SMAD4-211ENST00000590499 TMOD4Q9NZQ9 345 aa13.41□□□□□ -0.26
SMAD4-211ENST00000590499 RLFQ13129 1914 aa13.41□□□□□ -0.26
SMAD4-211ENST00000590499 A0A1W2PRG0 241 aa13.4□□□□□ -0.26
SMAD4-211ENST00000590499 PATL2C9JE40 543 aaKnown RBP13.4□□□□□ -0.26
SMAD4-211ENST00000590499 GNRH1P01148 92 aa13.4□□□□□ -0.26
SMAD4-211ENST00000590499 PSMC4P43686 418 aa13.4□□□□□ -0.26
SMAD4-211ENST00000590499 KIF22Q14807 665 aa13.4□□□□□ -0.26
SMAD4-211ENST00000590499 ARHGEF6Q15052 776 aa13.4□□□□□ -0.26
SMAD4-211ENST00000590499 FAM110CQ1W6H9 321 aa13.4□□□□□ -0.26
SMAD4-211ENST00000590499 ZNF598Q86UK7 904 aaKnown RBP13.4□□□□□ -0.26
SMAD4-211ENST00000590499 SIAH1Q8IUQ4 282 aa13.4□□□□□ -0.26
SMAD4-211ENST00000590499 IFNL3Q8IZI9 196 aa13.4□□□□□ -0.26
SMAD4-211ENST00000590499 SMCR8Q8TEV9 937 aaPredicted RBP13.4□□□□□ -0.26
SMAD4-211ENST00000590499 CCDC17Q96LX7 622 aa13.4□□□□□ -0.26
SMAD4-211ENST00000590499 RBBP6Q7Z6E9 1792 aaKnown RBP13.4□□□□□ -0.26
SMAD4-211ENST00000590499 TNRC18O15417 2968 aaPredicted RBP13.39□□□□□ -0.27
SMAD4-211ENST00000590499 PARP14Q460N5 1801 aa13.39□□□□□ -0.27
SMAD4-211ENST00000590499 A0A0D9SFI3 127 aa13.39□□□□□ -0.27
SMAD4-211ENST00000590499 GPR37O15354 613 aa13.39□□□□□ -0.27
SMAD4-211ENST00000590499 OATP04181 439 aa13.39□□□□□ -0.27
SMAD4-211ENST00000590499 GCLCP48506 637 aaPredicted RBP13.39□□□□□ -0.27
SMAD4-211ENST00000590499 USP14P54578 494 aa13.39□□□□□ -0.27
SMAD4-211ENST00000590499 CCDC129Q6ZRS4 1044 aa13.39□□□□□ -0.27
SMAD4-211ENST00000590499 CLEC10AQ8IUN9 316 aa13.39□□□□□ -0.27
SMAD4-211ENST00000590499 ANKRD13CQ8N6S4 541 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms