RNA–Protein interactions for RNA: ENST00000589285.1

ZNF540-207, Transcript of zinc finger protein 540, humanhuman

Gene ZNF540, Length 3,106 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-207ENST00000589285 CD97P48960 835 aa4.62□□□□□ -1.67
ZNF540-207ENST00000589285 FAM214BQ7L5A3 538 aa4.62□□□□□ -1.67
ZNF540-207ENST00000589285 FOXQ1Q9C009 403 aa4.62□□□□□ -1.67
ZNF540-207ENST00000589285 KCNQ5Q9NR82 932 aa4.62□□□□□ -1.67
ZNF540-207ENST00000589285 PIM2Q9P1W9 311 aa4.62□□□□□ -1.67
ZNF540-207ENST00000589285 ADAMTS6Q9UKP5 1117 aa4.62□□□□□ -1.67
ZNF540-207ENST00000589285 LEMD3Q9Y2U8 911 aa4.62□□□□□ -1.67
ZNF540-207ENST00000589285 KIF15Q9NS87 1388 aa4.62□□□□□ -1.67
ZNF540-207ENST00000589285 MSMPQ1L6U9 139 aa4.62□□□□□ -1.67
ZNF540-207ENST00000589285 TMC3Q7Z5M5 1100 aa4.62□□□□□ -1.67
ZNF540-207ENST00000589285 SPACA3Q8IXA5 215 aa4.62□□□□□ -1.67
ZNF540-207ENST00000589285 TINF2Q9BSI4 451 aa4.62□□□□□ -1.67
ZNF540-207ENST00000589285 PCMTD2Q9NV79 361 aa4.62□□□□□ -1.67
ZNF540-207ENST00000589285 SNCAIPQ9Y6H5 919 aa4.62□□□□□ -1.67
ZNF540-207ENST00000589285 MYO5CQ9NQX4 1742 aa4.62□□□□□ -1.67
ZNF540-207ENST00000589285 CFAP65Q6ZU64 1925 aaKnown RBP4.62□□□□□ -1.67
ZNF540-207ENST00000589285 ITSN2Q9NZM3 1697 aa4.62□□□□□ -1.67
ZNF540-207ENST00000589285 RAG1P15918 1043 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 VAMP1P23763 118 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 TNK2Q07912 1038 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 ADCY4Q8NFM4 1077 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 DCAF11Q8TEB1 546 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 ST7Q9NRC1 585 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 ABCC5O15440 1437 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 LTBP3Q9NS15 1303 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 DENND4BO75064 1496 aaPredicted RBP4.61□□□□□ -1.67
ZNF540-207ENST00000589285 PTPN23Q9H3S7 1636 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 PLXNC1O60486 1568 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 PTPRTO14522 1441 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 RRBP1Q9P2E9 1410 aaKnown RBP4.61□□□□□ -1.67
ZNF540-207ENST00000589285 FOSL1P15407 271 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 PWP1Q13610 501 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 LSRQ86X29 649 aaPredicted RBP4.61□□□□□ -1.67
ZNF540-207ENST00000589285 ZNF507Q8TCN5 953 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 BRF1Q92994 677 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 HSPA12BQ96MM6 686 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 SLC6A18Q96N87 628 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 NT5C1AQ9BXI3 368 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 METTL5Q9NRN9 209 aaKnown RBP4.61□□□□□ -1.67
ZNF540-207ENST00000589285 TACC3Q9Y6A5 838 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 DAPK1P53355 1430 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 AKNAQ7Z591 1439 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 SETD5Q9C0A6 1442 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 PREX2Q70Z35 1606 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 LRIG2O94898 1065 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 ATF4P18848 351 aaPredicted RBP4.61□□□□□ -1.67
ZNF540-207ENST00000589285 OXCT1P55809 520 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 PPFIBP1Q86W92 1011 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 WFDC3Q8IUB2 231 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 ZNF654Q8IZM8 581 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 DNAJB8Q8NHS0 232 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 MPHOSPH9Q99550 1183 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 PRDM5Q9NQX1 630 aaPredicted RBP4.61□□□□□ -1.67
ZNF540-207ENST00000589285 WASHC2CQ9Y4E1 1318 aa4.61□□□□□ -1.67
ZNF540-207ENST00000589285 C9orf84Q5VXU9 1444 aa4.6□□□□□ -1.67
ZNF540-207ENST00000589285 HYAL3O43820 417 aaPredicted RBP4.6□□□□□ -1.67
ZNF540-207ENST00000589285 RLBP1P12271 317 aa4.6□□□□□ -1.67
ZNF540-207ENST00000589285 GJA8P48165 433 aa4.6□□□□□ -1.67
ZNF540-207ENST00000589285 HP1BP3Q5SSJ5 553 aaPredicted RBP4.6□□□□□ -1.67
ZNF540-207ENST00000589285 NLRC3Q7RTR2 1065 aa4.6□□□□□ -1.67
ZNF540-207ENST00000589285 SLITRK4Q8IW52 837 aa4.6□□□□□ -1.67
ZNF540-207ENST00000589285 MRPL41Q8IXM3 137 aaKnown RBP4.6□□□□□ -1.67
ZNF540-207ENST00000589285 ZNF408Q9H9D4 720 aa4.6□□□□□ -1.67
ZNF540-207ENST00000589285 ATG3Q9NT62 314 aa4.6□□□□□ -1.67
ZNF540-207ENST00000589285 ZSWIM5Q9P217 1185 aa4.6□□□□□ -1.67
ZNF540-207ENST00000589285 PLCH2O75038 1416 aa4.6□□□□□ -1.67
ZNF540-207ENST00000589285 YEATS2Q9ULM3 1422 aa4.6□□□□□ -1.67
ZNF540-207ENST00000589285 PTPRMP28827 1452 aa4.6□□□□□ -1.67
ZNF540-207ENST00000589285 CST3P01034 146 aaPredicted RBP4.6□□□□□ -1.67
ZNF540-207ENST00000589285 PDE4BQ07343 736 aa4.6□□□□□ -1.67
ZNF540-207ENST00000589285 NAALADL2Q58DX5 795 aa4.6□□□□□ -1.67
ZNF540-207ENST00000589285 FBXO41Q8TF61 875 aa4.6□□□□□ -1.67
ZNF540-207ENST00000589285 DHX38Q92620 1227 aaKnown RBP4.6□□□□□ -1.67
ZNF540-207ENST00000589285 SHDQ96IW2 340 aa4.6□□□□□ -1.67
ZNF540-207ENST00000589285 YIPF2Q9BWQ6 316 aa4.6□□□□□ -1.67
ZNF540-207ENST00000589285 ZC3H13Q5T200 1668 aaKnown RBP4.6□□□□□ -1.67
ZNF540-207ENST00000589285 CD8BP10966 210 aa4.59□□□□□ -1.67
ZNF540-207ENST00000589285 DUSP27Q5VZP5 1158 aa4.59□□□□□ -1.67
ZNF540-207ENST00000589285 CELF2-AS1Q8N7Q2 184 aa4.59□□□□□ -1.67
ZNF540-207ENST00000589285 ANKRD30AQ9BXX3 1397 aa4.59□□□□□ -1.67
ZNF540-207ENST00000589285 NPATQ14207 1427 aa4.59□□□□□ -1.67
ZNF540-207ENST00000589285 PLEKHH2Q8IVE3 1493 aa4.59□□□□□ -1.67
ZNF540-207ENST00000589285 MLH3Q9UHC1 1453 aa4.59□□□□□ -1.67
ZNF540-207ENST00000589285 AOC3Q16853 763 aa4.59□□□□□ -1.67
ZNF540-207ENST00000589285 MCF2L2Q86YR7 1114 aa4.59□□□□□ -1.67
ZNF540-207ENST00000589285 SLFN12Q8IYM2 578 aa4.59□□□□□ -1.67
ZNF540-207ENST00000589285 CYB5D2Q8WUJ1 264 aa4.59□□□□□ -1.67
ZNF540-207ENST00000589285 CCDC39Q9UFE4 941 aa4.59□□□□□ -1.67
ZNF540-207ENST00000589285 ZNRF3Q9ULT6 936 aa4.59□□□□□ -1.67
ZNF540-207ENST00000589285 ANKRD50Q9ULJ7 1429 aa4.59□□□□□ -1.67
ZNF540-207ENST00000589285 CEACAM5P06731 702 aa4.59□□□□□ -1.68
ZNF540-207ENST00000589285 GBP1P32455 592 aa4.59□□□□□ -1.68
ZNF540-207ENST00000589285 KIR3DS1Q14943 382 aa4.59□□□□□ -1.68
ZNF540-207ENST00000589285 TTC6Q86TZ1 520 aa4.59□□□□□ -1.68
ZNF540-207ENST00000589285 CPLX3Q8WVH0 158 aa4.59□□□□□ -1.68
ZNF540-207ENST00000589285 FGD4Q96M96 766 aa4.59□□□□□ -1.68
ZNF540-207ENST00000589285 DNAJC2Q99543 621 aaKnown RBP4.59□□□□□ -1.68
ZNF540-207ENST00000589285 TGIF2Q9GZN2 237 aa4.59□□□□□ -1.68
ZNF540-207ENST00000589285 KCNK12Q9HB15 430 aa4.59□□□□□ -1.68
ZNF540-207ENST00000589285 PRR36Q9H6K5 1346 aa4.59□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms