RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 NPHP1O15259 732 aa8.45□□□□□ -1.06
ZNF540-206ENST00000589117 PRPF3O43395 683 aaKnown RBP8.45□□□□□ -1.06
ZNF540-206ENST00000589117 ATP9BO43861 1147 aa8.45□□□□□ -1.06
ZNF540-206ENST00000589117 DDAH1O94760 285 aa8.45□□□□□ -1.06
ZNF540-206ENST00000589117 HIBADHP31937 336 aaKnown RBP8.45□□□□□ -1.06
ZNF540-206ENST00000589117 KRT2P35908 639 aa8.45□□□□□ -1.06
ZNF540-206ENST00000589117 USP46P62068 366 aa8.45□□□□□ -1.06
ZNF540-206ENST00000589117 FANCCQ00597 558 aa8.45□□□□□ -1.06
ZNF540-206ENST00000589117 LONRF3Q496Y0 759 aa8.45□□□□□ -1.06
ZNF540-206ENST00000589117 TMC6Q7Z403 805 aa8.45□□□□□ -1.06
ZNF540-206ENST00000589117 NBPF11Q86T75 865 aa8.45□□□□□ -1.06
ZNF540-206ENST00000589117 NBPF5PQ86XG9 351 aaPredicted RBP8.45□□□□□ -1.06
ZNF540-206ENST00000589117 AMOTL1Q8IY63 956 aa8.45□□□□□ -1.06
ZNF540-206ENST00000589117 DEPDC4Q8N2C3 294 aa8.45□□□□□ -1.06
ZNF540-206ENST00000589117 CTCFLQ8NI51 663 aaPredicted RBP8.45□□□□□ -1.06
ZNF540-206ENST00000589117 SDR42E1Q8WUS8 393 aa8.45□□□□□ -1.06
ZNF540-206ENST00000589117 SMARCE1Q969G3 411 aa8.45□□□□□ -1.06
ZNF540-206ENST00000589117 IQSEC3Q9UPP2 1182 aaPredicted RBP8.45□□□□□ -1.06
ZNF540-206ENST00000589117 CNTNAP4Q9C0A0 1308 aa8.45□□□□□ -1.06
ZNF540-206ENST00000589117 TIAM2Q8IVF5 1701 aa8.45□□□□□ -1.06
ZNF540-206ENST00000589117 COL16A1Q07092 1604 aaPredicted RBP8.45□□□□□ -1.06
ZNF540-206ENST00000589117 CDK11BP21127 795 aaKnown RBP8.45□□□□□ -1.06
ZNF540-206ENST00000589117 POSTNQ15063 836 aa8.45□□□□□ -1.06
ZNF540-206ENST00000589117 CFAP100Q494V2 611 aa8.45□□□□□ -1.06
ZNF540-206ENST00000589117 CCDC178Q5BJE1 867 aa8.45□□□□□ -1.06
ZNF540-206ENST00000589117 FBXO33Q7Z6M2 555 aa8.45□□□□□ -1.06
ZNF540-206ENST00000589117 STK11IPQ8N1F8 1099 aa8.45□□□□□ -1.06
ZNF540-206ENST00000589117 UBE2Q2Q8WVN8 375 aa8.45□□□□□ -1.06
ZNF540-206ENST00000589117 FERMT2Q96AC1 680 aa8.45□□□□□ -1.06
ZNF540-206ENST00000589117 FAM84BQ96KN1 310 aaPredicted RBP8.45□□□□□ -1.06
ZNF540-206ENST00000589117 CLIC6Q96NY7 704 aa8.45□□□□□ -1.06
ZNF540-206ENST00000589117 RIOK1Q9BRS2 568 aaKnown RBP8.45□□□□□ -1.06
ZNF540-206ENST00000589117 KCNJ14Q9UNX9 436 aa8.45□□□□□ -1.06
ZNF540-206ENST00000589117 DOCK2Q92608 1830 aa8.44□□□□□ -1.06
ZNF540-206ENST00000589117 MROH7-TTC4A0A0A0MT08 1334 aa8.44□□□□□ -1.06
ZNF540-206ENST00000589117 WNK3Q9BYP7 1800 aa8.44□□□□□ -1.06
ZNF540-206ENST00000589117 PSDA5PKW4 1024 aaPredicted RBP8.44□□□□□ -1.06
ZNF540-206ENST00000589117 POLR2DO15514 142 aaKnown RBP8.44□□□□□ -1.06
ZNF540-206ENST00000589117 CTIFO43310 598 aaKnown RBP8.44□□□□□ -1.06
ZNF540-206ENST00000589117 FGRP09769 529 aa8.44□□□□□ -1.06
ZNF540-206ENST00000589117 KIF5BP33176 963 aa8.44□□□□□ -1.06
ZNF540-206ENST00000589117 PNOCQ13519 176 aa8.44□□□□□ -1.06
ZNF540-206ENST00000589117 SEC23AQ15436 765 aa8.44□□□□□ -1.06
ZNF540-206ENST00000589117 BICDL1Q6ZP65 573 aa8.44□□□□□ -1.06
ZNF540-206ENST00000589117 PACS2Q86VP3 889 aa8.44□□□□□ -1.06
ZNF540-206ENST00000589117 CCAR2Q8N163 923 aaKnown RBP8.44□□□□□ -1.06
ZNF540-206ENST00000589117 ENAHQ8N8S7 591 aaPredicted RBP8.44□□□□□ -1.06
ZNF540-206ENST00000589117 ZNF592Q92610 1267 aa8.44□□□□□ -1.06
ZNF540-206ENST00000589117 CABP5Q9NP86 173 aa8.44□□□□□ -1.06
ZNF540-206ENST00000589117 KIAA1522Q9P206 1035 aaPredicted RBP8.44□□□□□ -1.06
ZNF540-206ENST00000589117 ARPP21Q9UBL0 812 aaPredicted RBP8.44□□□□□ -1.06
ZNF540-206ENST00000589117 NARFQ9UHQ1 456 aa8.44□□□□□ -1.06
ZNF540-206ENST00000589117 PCDHA5Q9Y5H7 936 aa8.44□□□□□ -1.06
ZNF540-206ENST00000589117 CICQ96RK0 1608 aaPredicted RBP8.44□□□□□ -1.06
ZNF540-206ENST00000589117 A0A087WWV3 80 aa8.43□□□□□ -1.06
ZNF540-206ENST00000589117 TOM1O60784 492 aa8.43□□□□□ -1.06
ZNF540-206ENST00000589117 RPS6KA4O75676 772 aa8.43□□□□□ -1.06
ZNF540-206ENST00000589117 GUCY1A2P33402 732 aa8.43□□□□□ -1.06
ZNF540-206ENST00000589117 NCAPHQ15003 741 aa8.43□□□□□ -1.06
ZNF540-206ENST00000589117 PPP4R3BQ5MIZ7 849 aa8.43□□□□□ -1.06
ZNF540-206ENST00000589117 ISM2Q6H9L7 571 aa8.43□□□□□ -1.06
ZNF540-206ENST00000589117 CERS3Q8IU89 383 aa8.43□□□□□ -1.06
ZNF540-206ENST00000589117 SEPT9Q9UHD8 586 aaPredicted RBP8.43□□□□□ -1.06
ZNF540-206ENST00000589117 FBXO2Q9UK22 296 aaPredicted RBP8.43□□□□□ -1.06
ZNF540-206ENST00000589117 USP17L12C9JPN9 530 aa8.43□□□□□ -1.06
ZNF540-206ENST00000589117 USP17L21D6R901 530 aa8.43□□□□□ -1.06
ZNF540-206ENST00000589117 KCNQ2O43526 872 aa8.43□□□□□ -1.06
ZNF540-206ENST00000589117 ORC4O43929 436 aa8.43□□□□□ -1.06
ZNF540-206ENST00000589117 FBXO45P0C2W1 286 aa8.43□□□□□ -1.06
ZNF540-206ENST00000589117 POTEJP0CG39 1038 aa8.43□□□□□ -1.06
ZNF540-206ENST00000589117 TOP1P11387 765 aaKnown RBP8.43□□□□□ -1.06
ZNF540-206ENST00000589117 TOB1P50616 345 aaPredicted RBP8.43□□□□□ -1.06
ZNF540-206ENST00000589117 GSTO1P78417 241 aa8.43□□□□□ -1.06
ZNF540-206ENST00000589117 CCZ1BP86790 482 aa8.43□□□□□ -1.06
ZNF540-206ENST00000589117 CCZ1P86791 482 aaPredicted RBP8.43□□□□□ -1.06
ZNF540-206ENST00000589117 NT5DC1Q5TFE4 455 aa8.43□□□□□ -1.06
ZNF540-206ENST00000589117 CTR9Q6PD62 1173 aa8.43□□□□□ -1.06
ZNF540-206ENST00000589117 METTL16Q86W50 562 aaKnown RBP8.43□□□□□ -1.06
ZNF540-206ENST00000589117 SLF2Q8IX21 1173 aa8.43□□□□□ -1.06
ZNF540-206ENST00000589117 PDCL2Q8N4E4 241 aa8.43□□□□□ -1.06
ZNF540-206ENST00000589117 NKX2-3Q8TAU0 364 aa8.43□□□□□ -1.06
ZNF540-206ENST00000589117 NSUN4Q96CB9 384 aaKnown RBP8.43□□□□□ -1.06
ZNF540-206ENST00000589117 CCDC94Q9BW85 323 aaPredicted RBP8.43□□□□□ -1.06
ZNF540-206ENST00000589117 ZNF287Q9HBT7 754 aa8.43□□□□□ -1.06
ZNF540-206ENST00000589117 AATFQ9NY61 560 aaKnown RBP eCLIP8.43□□□□□ -1.06
ZNF540-206ENST00000589117 RTCBQ9Y3I0 505 aaKnown RBP8.43□□□□□ -1.06
ZNF540-206ENST00000589117 V9GY48 417 aaPredicted RBP8.43□□□□□ -1.06
ZNF540-206ENST00000589117 RREB1Q92766 1687 aa8.43□□□□□ -1.06
ZNF540-206ENST00000589117 SLIT2O94813 1529 aa8.43□□□□□ -1.06
ZNF540-206ENST00000589117 MYO5AQ9Y4I1 1855 aaKnown RBP8.42□□□□□ -1.06
ZNF540-206ENST00000589117 ZSCAN12O43309 604 aa8.42□□□□□ -1.06
ZNF540-206ENST00000589117 ATP2B1P20020 1258 aa8.42□□□□□ -1.06
ZNF540-206ENST00000589117 CALML3P27482 149 aa8.42□□□□□ -1.06
ZNF540-206ENST00000589117 ERCC5P28715 1186 aaPredicted RBP8.42□□□□□ -1.06
ZNF540-206ENST00000589117 TRAPPC10P48553 1259 aa8.42□□□□□ -1.06
ZNF540-206ENST00000589117 NR5A1Q13285 461 aa8.42□□□□□ -1.06
ZNF540-206ENST00000589117 SBK1Q52WX2 424 aa8.42□□□□□ -1.06
ZNF540-206ENST00000589117 NYAP1Q6ZVC0 841 aa8.42□□□□□ -1.06
ZNF540-206ENST00000589117 ADGRA1Q86SQ6 560 aa8.42□□□□□ -1.06
ZNF540-206ENST00000589117 DZIP1Q86YF9 867 aaKnown RBP8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms